Wall clock time and date at job start Thu Apr 9 2020 14:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99722 * 2 1 4 4 H 1.48506 * 109.47297 * 239.99731 * 3 2 1 5 5 H 1.48503 * 109.47261 * 119.99912 * 3 2 1 6 6 H 1.48500 * 109.47454 * 359.97438 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99572 * 0.02562 * 7 2 1 10 10 H 1.09006 * 110.29157 * 299.32605 * 9 7 2 11 11 C 1.54263 * 110.32795 * 61.45483 * 9 7 2 12 12 C 1.54376 * 105.05965 * 118.89465 * 11 9 7 13 13 N 1.48554 * 104.60062 * 23.85470 * 12 11 9 14 14 C 1.46890 * 111.00614 * 200.96350 * 13 12 11 15 15 C 1.50700 * 109.47462 * 69.86742 * 14 13 12 16 16 C 1.34330 * 126.44058 * 89.71432 * 15 14 13 17 17 N 1.34480 * 107.66716 * 179.87928 * 16 15 14 18 18 C 1.30252 * 108.69905 * 0.39180 * 17 16 15 19 19 O 1.33958 * 108.76421 * 359.76118 * 18 17 16 20 20 C 1.48567 * 104.21971 * 320.51681 * 13 12 11 21 21 H 0.97006 * 119.99995 * 179.97438 * 1 2 3 22 22 H 1.08998 * 110.32354 * 237.78992 * 11 9 7 23 23 H 1.09000 * 110.31795 * 359.97438 * 11 9 7 24 24 H 1.08996 * 110.41038 * 142.63881 * 12 11 9 25 25 H 1.09005 * 110.41041 * 265.07202 * 12 11 9 26 26 H 1.08996 * 109.47586 * 189.87566 * 14 13 12 27 27 H 1.09010 * 109.46847 * 309.87366 * 14 13 12 28 28 H 1.08003 * 126.16724 * 0.02562 * 16 15 14 29 29 H 1.08002 * 125.61548 * 179.77216 * 18 17 16 30 30 H 1.08998 * 110.41212 * 280.70473 * 20 13 12 31 31 H 1.08995 * 110.41038 * 158.25664 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 3.1028 1.6965 1.2125 6 1 1.2840 2.7465 -0.0006 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6280 -2.5759 0.8917 11 6 0.3850 -2.6178 -1.2705 12 6 0.9187 -3.8668 -2.0043 13 7 1.5555 -4.6833 -0.9391 14 6 2.5222 -5.6310 -1.5092 15 6 3.7177 -4.8763 -2.0310 16 6 4.8273 -4.5638 -1.3413 17 7 5.6476 -3.8937 -2.1698 18 6 5.0690 -3.7837 -3.3315 19 8 3.8723 -4.3829 -3.2754 20 6 2.2352 -3.6864 -0.0723 21 1 -0.4850 -0.8401 -0.0004 22 1 -0.6628 -2.7546 -1.0032 23 1 0.5046 -1.7319 -1.8941 24 1 0.0980 -4.4165 -2.4652 25 1 1.6549 -3.5808 -2.7554 26 1 2.8428 -6.3312 -0.7379 27 1 2.0542 -6.1800 -2.3264 28 1 5.0259 -4.8089 -0.3083 29 1 5.4856 -3.2908 -4.1975 30 1 3.1775 -3.3721 -0.5210 31 1 2.4057 -4.1003 0.9215 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259962025.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:16:52 Heat of formation + Delta-G solvation = 2.329500 kcal Electronic energy + Delta-G solvation = -15544.396389 eV Core-core repulsion = 13019.436722 eV Total energy + Delta-G solvation = -2524.959667 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -44.35833 -39.98017 -35.84595 -35.72351 -33.19698 -30.60027 -29.83942 -27.07202 -25.76401 -23.71546 -23.01532 -21.58653 -21.43348 -19.07196 -18.53756 -17.74933 -16.88569 -16.17254 -15.91732 -15.61744 -15.37339 -15.15045 -14.69532 -13.95993 -13.64845 -13.58928 -12.87130 -12.60007 -12.40311 -12.37625 -12.27292 -12.00354 -11.86173 -11.55905 -11.39222 -10.62714 -10.47834 -9.82165 -9.68424 -8.61903 -6.34710 0.47717 1.48984 1.55823 1.71967 1.75686 1.84357 2.53248 3.06502 3.17359 3.40800 3.77416 3.91737 3.95382 4.12344 4.22674 4.39435 4.45159 4.61071 4.69049 4.82012 4.87828 4.91044 5.03973 5.09774 5.33164 5.37317 5.58224 5.61507 5.95036 6.10423 6.19709 6.64416 6.69792 7.44881 8.77548 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.028697 B = 0.010086 C = 0.008365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.467621 B = 2775.574850 C = 3346.277870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.027 4.027 3 Si 1.108 2.892 4 H -0.276 1.276 5 H -0.272 1.272 6 H -0.281 1.281 7 C -0.605 4.605 8 H 0.036 0.964 9 C 0.021 3.979 10 H -0.004 1.004 11 C -0.106 4.106 12 C 0.043 3.957 13 N -0.498 5.498 14 C 0.125 3.875 15 C -0.078 4.078 16 C -0.046 4.046 17 N -0.522 5.522 18 C 0.170 3.830 19 O -0.212 6.212 20 C 0.046 3.954 21 H 0.263 0.737 22 H 0.042 0.958 23 H 0.035 0.965 24 H 0.095 0.905 25 H 0.036 0.964 26 H 0.134 0.866 27 H 0.110 0.890 28 H 0.189 0.811 29 H 0.288 0.712 30 H 0.046 0.954 31 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.785 -10.470 -6.426 14.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.226 4.226 3 Si 0.930 3.070 4 H -0.201 1.201 5 H -0.198 1.198 6 H -0.206 1.206 7 C -0.643 4.643 8 H 0.055 0.945 9 C 0.002 3.998 10 H 0.014 0.986 11 C -0.145 4.145 12 C -0.085 4.085 13 N -0.220 5.220 14 C -0.004 4.004 15 C -0.132 4.132 16 C -0.184 4.184 17 N -0.251 5.251 18 C -0.056 4.056 19 O -0.099 6.099 20 C -0.082 4.082 21 H 0.074 0.926 22 H 0.060 0.940 23 H 0.054 0.946 24 H 0.114 0.886 25 H 0.054 0.946 26 H 0.152 0.848 27 H 0.128 0.872 28 H 0.206 0.794 29 H 0.303 0.697 30 H 0.064 0.936 31 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.735 -8.949 -6.013 12.712 hybrid contribution 0.088 -1.111 -0.424 1.192 sum 6.823 -10.060 -6.437 13.754 Atomic orbital electron populations 1.70882 1.07616 1.30578 1.47979 1.27085 0.96667 1.05947 0.92921 0.83044 0.74252 0.72006 0.77679 1.20114 1.19787 1.20633 1.22277 0.93545 0.93010 1.55501 0.94536 1.19531 0.93621 0.93665 0.92978 0.98576 1.22297 0.98124 0.95939 0.98163 1.23085 0.98549 0.93706 0.93169 1.65746 1.25347 1.15417 1.15486 1.21358 0.84809 0.93910 1.00313 1.24807 1.01273 1.04262 0.82893 1.23324 0.91591 1.01788 1.01722 1.70400 1.33469 1.18551 1.02675 1.29031 0.80104 0.96842 0.99581 1.84474 1.37092 1.55827 1.32460 1.23210 0.96661 0.91409 0.96883 0.92627 0.93958 0.94590 0.88639 0.94602 0.84791 0.87167 0.79354 0.69678 0.93567 0.90853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.01 13.27 21.45 0.28 -56.72 16 2 C -0.03 -1.57 5.09 84.66 0.43 -1.14 16 3 Si 1.11 51.24 29.90 68.60 2.05 53.29 16 4 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 5 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 6 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 7 C -0.61 -34.62 8.37 25.60 0.21 -34.40 16 8 H 0.04 2.11 7.58 -2.91 -0.02 2.09 16 9 C 0.02 1.08 2.65 -10.64 -0.03 1.06 16 10 H 0.00 -0.22 8.04 -2.38 -0.02 -0.24 16 11 C -0.11 -5.03 5.03 31.49 0.16 -4.87 16 12 C 0.04 1.59 6.33 86.45 0.55 2.14 16 13 N -0.50 -17.19 5.65 -886.06 -5.01 -22.20 16 14 C 0.12 3.24 6.13 85.56 0.52 3.76 16 15 C -0.08 -2.32 4.83 24.79 0.12 -2.20 16 16 C -0.05 -1.42 9.84 83.39 0.82 -0.60 16 17 N -0.52 -16.83 11.29 -316.07 -3.57 -20.40 16 18 C 0.17 4.53 13.23 130.48 1.73 6.26 16 19 O -0.21 -6.34 9.90 -3.64 -0.04 -6.38 16 20 C 0.05 1.90 5.64 86.45 0.49 2.38 16 21 H 0.26 16.09 6.00 -92.70 -0.56 15.54 16 22 H 0.04 1.97 7.92 -2.39 -0.02 1.95 16 23 H 0.04 1.90 7.24 -2.39 -0.02 1.88 16 24 H 0.10 3.03 8.14 -2.39 -0.02 3.02 16 25 H 0.04 1.37 6.46 -2.38 -0.02 1.36 16 26 H 0.13 2.74 8.14 -2.39 -0.02 2.73 16 27 H 0.11 2.40 8.09 -2.38 -0.02 2.38 16 28 H 0.19 5.21 8.06 -2.91 -0.02 5.18 16 29 H 0.29 4.33 8.06 -2.91 -0.02 4.30 16 30 H 0.05 2.00 4.39 -2.39 -0.01 1.99 16 31 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 Total: -1.00 -69.72 254.74 0.06 -69.65 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: 1.34 Total: 10.37 kcal Atomic # 6 Polarization: -32.61 SS G_CDS: 5.00 Total: -27.61 kcal Atomic # 7 Polarization: -91.03 SS G_CDS: -8.29 Total: -99.32 kcal Atomic # 8 Polarization: -6.34 SS G_CDS: -0.04 Total: -6.38 kcal Atomic # 14 Polarization: 51.24 SS G_CDS: 2.05 Total: 53.29 kcal Total: -69.72 0.06 -69.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259962025.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.982 kcal (2) G-P(sol) polarization free energy of solvation -69.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds