Wall clock time and date at job start Thu Apr 9 2020 14:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47597 * 2 1 4 4 C 1.50701 * 109.46681 * 120.00021 * 2 1 3 5 5 H 1.07998 * 120.00589 * 2.98180 * 4 2 1 6 6 C 1.37877 * 119.99754 * 182.98535 * 4 2 1 7 7 N 1.31516 * 120.00302 * 183.58027 * 6 4 2 8 8 Si 1.86802 * 120.00147 * 3.85145 * 6 4 2 9 9 H 1.48510 * 109.46704 * 92.07780 * 8 6 4 10 10 H 1.48494 * 109.47477 * 212.07443 * 8 6 4 11 11 H 1.48498 * 109.47111 * 332.08326 * 8 6 4 12 12 C 1.50698 * 109.46775 * 239.99415 * 2 1 3 13 13 C 1.38200 * 119.97583 * 245.42304 * 12 2 1 14 14 C 1.38155 * 120.10982 * 179.72856 * 13 12 2 15 15 C 1.38794 * 120.05599 * 0.54995 * 14 13 12 16 16 O 1.35893 * 120.02959 * 179.70578 * 15 14 13 17 17 C 1.38616 * 119.94323 * 359.72516 * 15 14 13 18 18 C 1.38655 * 119.88880 * 0.02562 * 17 15 14 19 19 O 1.35900 * 120.02311 * 180.02562 * 18 17 15 20 20 H 1.09000 * 109.46669 * 300.00499 * 1 2 3 21 21 H 1.08996 * 109.46666 * 59.99783 * 1 2 3 22 22 H 1.08998 * 109.47634 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.46994 * 187.84399 * 3 2 1 24 24 H 1.09000 * 109.46507 * 307.84351 * 3 2 1 25 25 H 1.08995 * 109.47516 * 67.84095 * 3 2 1 26 26 H 0.97000 * 120.00233 * 179.97438 * 7 6 4 27 27 H 1.08003 * 119.94142 * 0.02562 * 13 12 2 28 28 H 1.08000 * 119.97283 * 180.25919 * 14 13 12 29 29 H 0.96702 * 113.99813 * 270.02365 * 16 15 14 30 30 H 1.08002 * 120.05394 * 180.02562 * 17 15 14 31 31 H 0.96706 * 113.99707 * 269.97397 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 1.3316 -1.1628 1.9167 6 6 3.3863 -0.7828 1.4803 7 7 3.8286 -1.4626 2.5157 8 14 4.5922 0.0908 0.3524 9 1 4.8646 1.4525 0.8788 10 1 5.8603 -0.6793 0.2919 11 1 4.0101 0.1941 -1.0098 12 6 2.0323 -0.7105 -1.2304 13 6 2.7318 -1.8959 -1.1060 14 6 3.1887 -2.5525 -2.2324 15 6 2.9559 -2.0170 -3.4916 16 8 3.4107 -2.6603 -4.5989 17 6 2.2594 -0.8253 -3.6187 18 6 1.7974 -0.1709 -2.4869 19 8 1.1138 0.9973 -2.6084 20 1 -0.3633 0.5139 0.8900 21 1 -0.3632 0.5139 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 3.1210 1.4455 -0.1402 24 1 1.5668 1.9951 -0.8116 25 1 1.7959 1.9143 0.9517 26 1 4.7812 -1.5138 2.6912 27 1 2.9175 -2.3120 -0.1268 28 1 3.7315 -3.4808 -2.1329 29 1 4.3014 -2.3974 -4.8684 30 1 2.0768 -0.4072 -4.5976 31 1 1.6750 1.7848 -2.5931 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260008525.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:16:59 Heat of formation + Delta-G solvation = -47.685917 kcal Electronic energy + Delta-G solvation = -15861.489351 eV Core-core repulsion = 13302.068101 eV Total energy + Delta-G solvation = -2559.421250 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.104 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.89633 -37.67618 -35.92686 -34.41858 -31.85393 -29.54332 -28.02346 -26.52175 -25.19875 -22.18561 -21.81135 -19.22819 -18.48800 -16.88435 -16.55167 -15.69255 -15.20586 -14.74442 -14.49522 -13.73673 -13.14449 -12.95860 -12.81310 -12.56806 -12.17998 -11.79920 -11.47907 -11.13222 -10.73568 -10.44844 -10.34635 -10.13683 -10.04467 -9.89629 -9.22292 -8.91972 -8.58451 -8.17191 -7.54457 -6.18852 -4.18255 1.78263 1.86964 3.21858 3.31767 3.34904 4.04807 4.31136 4.57984 4.89549 5.09219 5.46206 5.67090 5.78529 6.07356 6.19052 6.28974 6.33931 6.43517 6.56285 6.62642 6.76276 6.78247 6.88515 6.98676 7.16991 7.25068 7.35920 7.51099 7.78529 7.93417 8.16883 8.45565 8.87374 9.43077 10.92679 Molecular weight = 222.10amu Principal moments of inertia in cm(-1) A = 0.026304 B = 0.014735 C = 0.011756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.204891 B = 1899.828038 C = 2381.117869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.070 3.930 3 C -0.148 4.148 4 C -0.510 4.510 5 H 0.078 0.922 6 C 0.075 3.925 7 N -0.894 5.894 8 Si 0.873 3.127 9 H -0.287 1.287 10 H -0.300 1.300 11 H -0.246 1.246 12 C -0.061 4.061 13 C -0.080 4.080 14 C -0.161 4.161 15 C 0.086 3.914 16 O -0.502 6.502 17 C -0.179 4.179 18 C 0.099 3.901 19 O -0.492 6.492 20 H 0.046 0.954 21 H 0.046 0.954 22 H 0.042 0.958 23 H 0.035 0.965 24 H 0.043 0.957 25 H 0.057 0.943 26 H 0.265 0.735 27 H 0.159 0.841 28 H 0.121 0.879 29 H 0.380 0.620 30 H 0.121 0.879 31 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.226 3.100 -10.114 10.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.069 3.931 3 C -0.205 4.205 4 C -0.547 4.547 5 H 0.097 0.903 6 C -0.127 4.127 7 N -0.532 5.532 8 Si 0.705 3.295 9 H -0.215 1.215 10 H -0.228 1.228 11 H -0.171 1.171 12 C -0.062 4.062 13 C -0.097 4.097 14 C -0.179 4.179 15 C 0.042 3.958 16 O -0.311 6.311 17 C -0.198 4.198 18 C 0.055 3.945 19 O -0.302 6.302 20 H 0.066 0.934 21 H 0.065 0.935 22 H 0.061 0.939 23 H 0.054 0.946 24 H 0.062 0.938 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.177 0.823 28 H 0.139 0.861 29 H 0.235 0.765 30 H 0.139 0.861 31 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -0.669 2.390 -10.006 10.309 hybrid contribution 1.801 0.978 -0.556 2.123 sum 1.132 3.368 -10.562 11.144 Atomic orbital electron populations 1.21658 0.95401 1.00413 1.00005 1.17532 0.93291 0.91441 0.90841 1.22355 0.98958 0.98353 1.00836 1.20949 0.92557 1.35061 1.06154 0.90348 1.25062 0.98242 0.94465 0.94905 1.69909 1.14634 1.40567 1.28047 0.87323 0.80201 0.79018 0.83001 1.21476 1.22840 1.17133 1.21016 0.94662 0.95708 0.94822 1.21617 0.94458 0.94025 0.99615 1.21509 1.03425 1.01114 0.91871 1.18164 0.99740 0.92181 0.85698 1.84813 1.36266 1.65828 1.44207 1.21444 1.02960 0.96760 0.98640 1.18195 0.96207 0.88539 0.91546 1.84837 1.35745 1.14127 1.95512 0.93449 0.93490 0.93888 0.94633 0.93847 0.92375 0.92511 0.82346 0.86084 0.76542 0.86078 0.76535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.41 8.24 37.16 0.31 -2.11 16 2 C 0.07 1.56 0.48 -156.81 -0.08 1.48 16 3 C -0.15 -3.03 7.27 37.16 0.27 -2.76 16 4 C -0.51 -13.42 7.49 -34.44 -0.26 -13.67 16 5 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 6 C 0.08 2.04 4.07 -17.82 -0.07 1.97 16 7 N -0.89 -25.96 13.96 55.43 0.77 -25.19 16 8 Si 0.87 20.87 21.96 -169.99 -3.73 17.13 16 9 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 10 H -0.30 -7.34 7.11 56.52 0.40 -6.94 16 11 H -0.25 -5.49 4.44 56.52 0.25 -5.24 16 12 C -0.06 -1.32 2.56 -104.45 -0.27 -1.58 16 13 C -0.08 -1.74 6.57 -39.63 -0.26 -2.00 16 14 C -0.16 -3.09 9.98 -39.41 -0.39 -3.48 16 15 C 0.09 1.54 6.70 -39.24 -0.26 1.28 16 16 O -0.50 -7.66 13.50 -19.40 -0.26 -7.92 16 17 C -0.18 -3.20 9.93 -39.29 -0.39 -3.59 16 18 C 0.10 1.91 6.17 -39.24 -0.24 1.67 16 19 O -0.49 -8.35 10.15 -19.42 -0.20 -8.55 16 20 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 21 H 0.05 0.90 6.61 -51.93 -0.34 0.55 16 22 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 23 H 0.04 0.75 2.92 -51.93 -0.15 0.60 16 24 H 0.04 0.74 5.29 -51.93 -0.27 0.47 16 25 H 0.06 1.19 8.13 -51.93 -0.42 0.77 16 26 H 0.26 7.29 8.31 -40.82 -0.34 6.96 16 27 H 0.16 3.83 5.41 -52.48 -0.28 3.55 16 28 H 0.12 2.09 8.06 -52.49 -0.42 1.66 16 29 H 0.38 3.86 9.06 45.56 0.41 4.27 16 30 H 0.12 1.90 8.06 -52.49 -0.42 1.48 16 31 H 0.38 5.01 7.69 45.56 0.35 5.36 16 LS Contribution 241.51 15.07 3.64 3.64 Total: -1.00 -30.34 241.51 -3.53 -33.87 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -2.11 Total: 9.81 kcal Atomic # 6 Polarization: -21.16 SS G_CDS: -1.65 Total: -22.80 kcal Atomic # 7 Polarization: -25.96 SS G_CDS: 0.77 Total: -25.19 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -0.46 Total: -16.47 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -3.73 Total: 17.13 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -30.34 -3.53 -33.87 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260008525.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.812 kcal (2) G-P(sol) polarization free energy of solvation -30.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds