Wall clock time and date at job start Thu Apr 9 2020 14:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 119.99886 * 2 1 4 4 H 1.48502 * 109.46840 * 265.71460 * 3 2 1 5 5 H 1.48498 * 109.46841 * 25.71444 * 3 2 1 6 6 H 1.48493 * 109.47162 * 145.71405 * 3 2 1 7 7 C 1.37876 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00266 * 353.36223 * 7 2 1 9 9 C 1.50705 * 119.99799 * 173.35390 * 7 2 1 10 10 H 1.08995 * 109.47239 * 355.27151 * 9 7 2 11 11 C 1.53002 * 109.47209 * 235.27166 * 9 7 2 12 12 N 1.46898 * 109.46980 * 64.86529 * 11 9 7 13 13 C 1.50706 * 109.46682 * 115.27413 * 9 7 2 14 14 C 1.38675 * 120.79227 * 60.00080 * 13 9 7 15 15 C 1.38177 * 119.16441 * 179.74132 * 14 13 9 16 16 N 1.31890 * 120.76344 * 0.27838 * 15 14 13 17 17 C 1.31857 * 121.72586 * 359.97358 * 16 15 14 18 18 C 1.50693 * 119.61362 * 180.02562 * 17 16 15 19 19 O 1.42906 * 109.47007 * 180.02562 * 18 17 16 20 20 C 1.38224 * 120.76166 * 0.02562 * 17 16 15 21 21 H 0.97002 * 120.00223 * 359.97438 * 1 2 3 22 22 H 1.08995 * 109.47358 * 184.87058 * 11 9 7 23 23 H 1.08999 * 109.47079 * 304.86634 * 11 9 7 24 24 H 1.00899 * 111.00075 * 178.11576 * 12 11 9 25 25 H 1.00902 * 110.99953 * 302.06925 * 12 11 9 26 26 H 1.08006 * 120.41533 * 0.02562 * 14 13 9 27 27 H 1.07995 * 119.61570 * 180.24657 * 15 14 13 28 28 H 1.09002 * 109.47533 * 299.99415 * 18 17 16 29 29 H 1.09003 * 109.47448 * 60.00105 * 18 17 16 30 30 H 0.96697 * 114.00372 * 180.02562 * 19 18 17 31 31 H 1.08002 * 120.41224 * 179.97438 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.5872 1.9941 -1.3962 5 1 1.4041 2.6771 0.6075 6 1 3.4983 1.4681 0.7887 7 6 2.0045 -1.1940 0.0005 8 1 1.4700 -2.1261 0.1091 9 6 3.5040 -1.1984 -0.1505 10 1 3.8539 -0.1820 -0.3308 11 6 3.8950 -2.0894 -1.3313 12 7 3.3779 -1.5067 -2.5767 13 6 4.1343 -1.7305 1.1107 14 6 3.8493 -3.0107 1.5613 15 6 4.4503 -3.4664 2.7190 16 7 5.2813 -2.6975 3.3955 17 6 5.5715 -1.4736 2.9997 18 6 6.5280 -0.6364 3.8089 19 8 6.6849 0.6414 3.1886 20 6 5.0085 -0.9499 1.8511 21 1 -0.4850 0.8400 0.0004 22 1 4.9811 -2.1620 -1.3876 23 1 3.4712 -3.0839 -1.1920 24 1 3.6493 -2.0608 -3.3751 25 1 2.3756 -1.3978 -2.5360 26 1 3.1697 -3.6452 1.0116 27 1 4.2367 -4.4636 3.0743 28 1 6.1330 -0.5046 4.8163 29 1 7.4950 -1.1369 3.8604 30 1 7.2888 1.2343 3.6563 31 1 5.2498 0.0534 1.5323 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260008686.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:17:02 Heat of formation + Delta-G solvation = -24.484863 kcal Electronic energy + Delta-G solvation = -15061.323387 eV Core-core repulsion = 12535.200961 eV Total energy + Delta-G solvation = -2526.122425 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.72906 -36.73257 -35.62606 -32.28280 -31.99014 -31.09847 -28.14071 -26.31247 -24.35801 -22.50836 -21.78659 -19.24547 -17.51104 -16.98698 -16.00219 -15.12088 -14.99643 -14.89016 -14.67702 -14.18458 -13.88695 -13.34462 -12.92047 -12.63021 -12.16474 -11.78105 -11.56790 -11.36531 -11.01693 -10.72901 -10.28431 -10.07478 -9.83078 -9.32847 -8.94288 -8.63094 -8.46323 -8.31246 -7.83153 -6.19027 -4.20678 1.75656 2.03702 3.34498 3.39109 3.44238 4.04589 4.37730 4.41431 5.04595 5.12664 5.30297 5.36506 5.50906 5.58671 5.81428 5.88897 6.02532 6.13182 6.21082 6.38853 6.45066 6.64552 6.85394 6.93745 7.28031 7.43934 7.59885 7.69443 8.01471 8.30388 8.38679 8.50892 8.83179 9.43765 10.92239 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.023776 B = 0.010771 C = 0.009255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.382620 B = 2598.919858 C = 3024.531659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.081 3.919 3 Si 0.876 3.124 4 H -0.268 1.268 5 H -0.292 1.292 6 H -0.263 1.263 7 C -0.509 4.509 8 H 0.074 0.926 9 C 0.041 3.959 10 H 0.056 0.944 11 C 0.083 3.917 12 N -0.848 5.848 13 C 0.005 3.995 14 C -0.161 4.161 15 C 0.088 3.912 16 N -0.505 5.505 17 C 0.104 3.896 18 C 0.136 3.864 19 O -0.566 6.566 20 C -0.158 4.158 21 H 0.266 0.734 22 H 0.043 0.957 23 H 0.017 0.983 24 H 0.322 0.678 25 H 0.355 0.645 26 H 0.129 0.871 27 H 0.148 0.852 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.381 0.619 31 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.827 -2.242 3.443 11.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.123 4.123 3 Si 0.704 3.296 4 H -0.194 1.194 5 H -0.219 1.219 6 H -0.187 1.187 7 C -0.547 4.547 8 H 0.092 0.908 9 C 0.022 3.978 10 H 0.074 0.926 11 C -0.049 4.049 12 N -0.378 5.378 13 C -0.004 4.004 14 C -0.181 4.181 15 C -0.068 4.068 16 N -0.217 5.217 17 C -0.033 4.033 18 C 0.057 3.943 19 O -0.371 6.371 20 C -0.178 4.178 21 H 0.076 0.924 22 H 0.061 0.939 23 H 0.035 0.965 24 H 0.132 0.868 25 H 0.170 0.830 26 H 0.147 0.853 27 H 0.165 0.835 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.228 0.772 31 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 11.049 -2.061 3.965 11.918 hybrid contribution -0.344 0.506 -0.290 0.677 sum 10.705 -1.554 3.675 11.425 Atomic orbital electron populations 1.69895 1.06391 1.27386 1.49100 1.25065 0.94691 0.99151 0.93378 0.86836 0.80237 0.83233 0.79314 1.19369 1.21876 1.18744 1.20772 0.87822 0.94798 1.51274 0.90762 1.18409 0.96564 0.95981 0.86854 0.92636 1.21716 0.96592 0.95569 0.91004 1.58667 1.20135 1.55485 1.03520 1.21139 0.89298 0.92203 0.97779 1.21934 1.01019 0.97229 0.97909 1.22443 0.93458 0.98629 0.92274 1.67077 1.16468 1.05082 1.33078 1.20634 0.97088 0.91479 0.94065 1.20483 0.96771 0.82993 0.94026 1.86497 1.69805 1.25965 1.54851 1.21830 0.98245 1.01568 0.96142 0.92409 0.93871 0.96472 0.86821 0.82951 0.85281 0.83511 0.91953 0.92000 0.77201 0.84839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.28 13.96 55.43 0.77 -25.51 16 2 C 0.08 2.25 5.47 -17.82 -0.10 2.16 16 3 Si 0.88 21.79 26.93 -169.99 -4.58 17.21 16 4 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.26 -6.44 6.72 56.52 0.38 -6.06 16 7 C -0.51 -13.50 7.57 -34.44 -0.26 -13.76 16 8 H 0.07 2.13 8.06 -52.49 -0.42 1.70 16 9 C 0.04 0.95 2.12 -92.92 -0.20 0.76 16 10 H 0.06 1.36 4.66 -51.93 -0.24 1.11 16 11 C 0.08 1.66 5.98 -3.82 -0.02 1.64 16 12 N -0.85 -16.46 9.61 -10.37 -0.10 -16.56 16 13 C 0.00 0.10 4.78 -104.32 -0.50 -0.40 16 14 C -0.16 -3.15 9.02 -39.44 -0.36 -3.51 16 15 C 0.09 1.57 11.18 -17.55 -0.20 1.38 16 16 N -0.51 -9.45 10.27 -9.48 -0.10 -9.55 16 17 C 0.10 1.97 6.78 -82.59 -0.56 1.41 16 18 C 0.14 1.95 7.59 36.00 0.27 2.23 16 19 O -0.57 -7.98 12.11 -35.23 -0.43 -8.41 16 20 C -0.16 -3.32 9.07 -39.44 -0.36 -3.68 16 21 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 22 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 23 H 0.02 0.34 7.66 -51.93 -0.40 -0.06 16 24 H 0.32 5.12 9.08 -39.29 -0.36 4.76 16 25 H 0.36 7.48 8.11 -39.29 -0.32 7.16 16 26 H 0.13 2.41 7.73 -52.48 -0.41 2.01 16 27 H 0.15 2.09 8.06 -52.49 -0.42 1.67 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.38 3.08 9.12 45.56 0.42 3.49 16 31 H 0.13 2.88 6.84 -52.49 -0.36 2.53 16 LS Contribution 265.43 15.07 4.00 4.00 Total: -1.00 -31.51 265.43 -5.64 -37.15 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -2.94 Total: 13.45 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: -2.27 Total: -11.78 kcal Atomic # 7 Polarization: -52.19 SS G_CDS: 0.58 Total: -51.62 kcal Atomic # 8 Polarization: -7.98 SS G_CDS: -0.43 Total: -8.41 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.58 Total: 17.21 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -31.51 -5.64 -37.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260008686.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.666 kcal (2) G-P(sol) polarization free energy of solvation -31.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds