Wall clock time and date at job start Thu Apr 9 2020 14:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30852 * 1 3 3 Si 1.86801 * 119.99625 * 2 1 4 4 H 1.48499 * 109.47423 * 270.00147 * 3 2 1 5 5 H 1.48502 * 109.47305 * 29.99984 * 3 2 1 6 6 H 1.48503 * 109.47244 * 149.99992 * 3 2 1 7 7 C 1.40066 * 120.00485 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00062 * 180.02562 * 7 2 1 9 9 C 1.40061 * 119.99818 * 359.97438 * 7 2 1 10 10 C 1.39626 * 127.06131 * 359.97438 * 9 7 2 11 11 N 1.33019 * 107.46088 * 180.27365 * 10 9 7 12 12 C 1.31015 * 109.98192 * 359.58896 * 11 10 9 13 13 C 1.50698 * 125.17638 * 180.16743 * 12 11 10 14 14 H 1.09000 * 109.47980 * 65.26308 * 13 12 11 15 15 C 1.53090 * 109.48239 * 305.22853 * 13 12 11 16 16 C 1.53174 * 109.16669 * 182.40587 * 15 13 12 17 17 C 1.53176 * 109.03435 * 56.98277 * 16 15 13 18 18 C 1.53095 * 109.16190 * 303.02019 * 17 16 15 19 19 O 1.42900 * 109.48160 * 185.28754 * 13 12 11 20 20 N 1.35077 * 109.64327 * 0.41867 * 12 11 10 21 21 H 0.97002 * 126.48067 * 179.73549 * 20 12 11 22 22 H 0.96998 * 120.00216 * 0.02562 * 1 2 3 23 23 H 1.08002 * 126.26447 * 0.02562 * 10 9 7 24 24 H 1.09002 * 109.52300 * 302.31976 * 15 13 12 25 25 H 1.09009 * 109.52217 * 62.50357 * 15 13 12 26 26 H 1.09000 * 109.54720 * 297.11862 * 16 15 13 27 27 H 1.08996 * 109.54825 * 176.84558 * 16 15 13 28 28 H 1.09003 * 109.52815 * 183.11962 * 17 16 15 29 29 H 1.08996 * 109.52697 * 62.92561 * 17 16 15 30 30 H 1.09002 * 109.48414 * 297.62195 * 18 17 16 31 31 H 1.09002 * 109.48958 * 177.59877 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 2.4899 2.0466 -1.4000 5 1 1.4398 2.6527 0.7000 6 1 3.5400 1.4404 0.7000 7 6 2.0090 -1.2129 -0.0005 8 1 3.0890 -1.2129 -0.0001 9 6 1.3087 -2.4259 -0.0005 10 6 -0.0769 -2.5977 0.0005 11 7 -0.3170 -3.9060 0.0061 12 6 0.8133 -4.5686 -0.0001 13 6 0.9393 -6.0703 -0.0001 14 1 0.5358 -6.4689 -0.9309 15 6 0.1592 -6.6481 1.1836 16 6 0.3414 -8.1687 1.2118 17 6 1.8368 -8.4914 1.2881 18 6 2.5522 -7.8423 0.1003 19 8 2.3166 -6.4330 0.1163 20 7 1.8484 -3.7008 -0.0009 21 1 2.7914 -3.9279 -0.0014 22 1 -0.4850 0.8400 -0.0004 23 1 -0.8180 -1.8120 0.0010 24 1 0.5354 -6.2189 2.1122 25 1 -0.8989 -6.4101 1.0737 26 1 -0.0796 -8.6033 0.3051 27 1 -0.1654 -8.5807 2.0844 28 1 1.9788 -9.5715 1.2527 29 1 2.2470 -8.0994 2.2187 30 1 2.1698 -8.2643 -0.8292 31 1 3.6230 -8.0327 0.1724 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260025961.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:15:08 Heat of formation + Delta-G solvation = -16.287319 kcal Electronic energy + Delta-G solvation = -15021.791532 eV Core-core repulsion = 12496.024579 eV Total energy + Delta-G solvation = -2525.766953 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.00214 -38.65891 -33.62815 -33.43854 -31.35386 -30.72148 -28.11882 -25.67434 -23.84216 -22.87744 -20.11809 -19.83176 -19.00118 -17.54529 -16.09217 -15.70753 -15.24223 -14.68024 -14.33886 -14.03638 -13.51297 -12.84545 -12.58734 -12.44531 -12.13388 -11.88541 -11.28908 -11.18712 -11.01405 -10.92164 -10.67486 -10.51836 -10.28250 -9.98293 -9.42172 -9.17656 -8.29025 -8.20488 -6.84818 -6.58847 -4.19822 2.99494 3.11544 3.15360 3.73302 3.95295 4.01277 4.67675 4.79903 4.92800 4.99884 5.11871 5.37753 5.43602 5.48043 5.64966 5.75128 5.89335 5.91536 6.04634 6.16084 6.27346 6.47865 6.67344 7.00560 7.17012 7.48497 7.76297 7.82245 8.06714 8.55691 8.92394 9.05874 9.32103 9.99460 10.37286 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.063537 B = 0.006398 C = 0.005982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.584897 B = 4375.601097 C = 4679.381891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.072 3.928 3 Si 0.926 3.074 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.266 1.266 7 C -0.446 4.446 8 H 0.070 0.930 9 C 0.176 3.824 10 C -0.128 4.128 11 N -0.475 5.475 12 C 0.075 3.925 13 C 0.204 3.796 14 H 0.058 0.942 15 C -0.136 4.136 16 C -0.123 4.123 17 C -0.156 4.156 18 C 0.065 3.935 19 O -0.385 6.385 20 N -0.593 5.593 21 H 0.400 0.600 22 H 0.278 0.722 23 H 0.187 0.813 24 H 0.067 0.933 25 H 0.082 0.918 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.047 0.953 31 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.465 -10.502 1.138 11.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.144 4.144 3 Si 0.751 3.249 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.190 1.190 7 C -0.482 4.482 8 H 0.089 0.911 9 C 0.062 3.938 10 C -0.277 4.277 11 N -0.197 5.197 12 C -0.178 4.178 13 C 0.145 3.855 14 H 0.076 0.924 15 C -0.175 4.175 16 C -0.161 4.161 17 C -0.194 4.194 18 C -0.012 4.012 19 O -0.304 6.304 20 N -0.203 5.203 21 H 0.235 0.765 22 H 0.089 0.911 23 H 0.203 0.797 24 H 0.086 0.914 25 H 0.101 0.899 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.066 0.934 31 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.537 -10.620 1.165 10.981 hybrid contribution 1.498 0.813 0.011 1.705 sum 4.036 -9.807 1.176 10.670 Atomic orbital electron populations 1.69602 1.07276 1.28478 1.37805 1.25642 0.94860 1.00737 0.93147 0.86035 0.79803 0.80146 0.78950 1.19637 1.20211 1.18979 1.18364 0.93838 0.88542 1.47479 0.91146 1.19110 0.93498 0.82831 0.98338 1.23406 0.94223 0.90463 1.19651 1.69302 1.25838 1.07118 1.17430 1.21359 0.84525 0.90340 1.21588 1.19714 0.80786 0.88349 0.96674 0.92379 1.22101 1.02003 0.93891 0.99471 1.21636 0.95680 0.96818 1.01920 1.22199 0.96679 1.00461 1.00054 1.22488 1.00188 0.81724 0.96811 1.87829 1.25864 1.22172 1.94519 1.42746 1.07969 1.06534 1.63065 0.76511 0.91077 0.79699 0.91403 0.89922 0.91990 0.91723 0.91363 0.91181 0.93442 0.89266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.40 10.35 55.56 0.57 -20.82 16 2 C 0.07 1.86 5.50 -17.28 -0.10 1.77 16 3 Si 0.93 19.19 29.56 -169.99 -5.03 14.16 16 4 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 5 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 6 H -0.27 -5.43 7.11 56.52 0.40 -5.02 16 7 C -0.45 -12.16 9.45 -38.21 -0.36 -12.52 16 8 H 0.07 1.81 7.85 -52.48 -0.41 1.39 16 9 C 0.18 4.95 6.96 -83.68 -0.58 4.37 16 10 C -0.13 -3.72 10.88 -16.52 -0.18 -3.90 16 11 N -0.48 -12.96 11.12 -9.76 -0.11 -13.07 16 12 C 0.08 1.85 7.22 -154.95 -1.12 0.73 16 13 C 0.20 3.94 3.20 -27.84 -0.09 3.85 16 14 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 15 C -0.14 -2.30 5.36 -26.59 -0.14 -2.45 16 16 C -0.12 -1.56 6.03 -26.55 -0.16 -1.72 16 17 C -0.16 -1.81 6.14 -26.59 -0.16 -1.98 16 18 C 0.06 0.84 6.84 37.21 0.25 1.09 16 19 O -0.39 -6.82 9.87 -35.23 -0.35 -7.17 16 20 N -0.59 -14.87 6.05 -7.86 -0.05 -14.92 16 21 H 0.40 8.99 8.56 -40.82 -0.35 8.64 16 22 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 23 H 0.19 5.54 5.78 -52.49 -0.30 5.24 16 24 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 25 H 0.08 1.46 8.14 -51.92 -0.42 1.04 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 259.61 15.07 3.91 3.91 Total: -1.00 -30.22 259.61 -7.68 -37.91 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -4.00 Total: 10.75 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: -2.64 Total: -10.75 kcal Atomic # 7 Polarization: -49.23 SS G_CDS: 0.42 Total: -48.81 kcal Atomic # 8 Polarization: -6.82 SS G_CDS: -0.35 Total: -7.17 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.03 Total: 14.16 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -30.22 -7.68 -37.91 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260025961.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.619 kcal (2) G-P(sol) polarization free energy of solvation -30.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds