Wall clock time and date at job start Thu Apr 9 2020 14:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.46854 * 2 1 4 4 C 1.50706 * 109.47469 * 119.99503 * 2 1 3 5 5 H 1.07995 * 120.00180 * 119.91211 * 4 2 1 6 6 C 1.37870 * 119.99859 * 299.91928 * 4 2 1 7 7 N 1.31516 * 120.00209 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 120.00061 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46977 * 59.99977 * 8 6 4 10 10 H 1.48498 * 109.47358 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.46937 * 300.00283 * 8 6 4 12 12 C 1.50696 * 109.47631 * 239.99682 * 2 1 3 13 13 C 1.38259 * 119.92447 * 3.69086 * 12 2 1 14 14 C 1.38237 * 120.14700 * 179.97438 * 13 12 2 15 15 C 1.38568 * 120.00230 * 0.02562 * 14 13 12 16 16 O 1.35992 * 120.07633 * 180.02562 * 15 14 13 17 17 C 1.39153 * 119.85085 * 359.97438 * 15 14 13 18 18 O 1.35989 * 120.07302 * 180.02562 * 17 15 14 19 19 C 1.38238 * 119.93069 * 183.41012 * 12 2 1 20 20 H 1.09009 * 109.46822 * 180.02562 * 1 2 3 21 21 H 1.08994 * 109.47233 * 60.00582 * 1 2 3 22 22 H 1.09003 * 109.47424 * 299.99629 * 1 2 3 23 23 H 1.08992 * 109.47521 * 59.99902 * 3 2 1 24 24 H 1.09002 * 109.47155 * 179.97438 * 3 2 1 25 25 H 1.08994 * 109.46725 * 299.99729 * 3 2 1 26 26 H 0.97003 * 120.00087 * 179.97438 * 7 6 4 27 27 H 1.08000 * 119.92178 * 359.97150 * 13 12 2 28 28 H 1.08001 * 119.99911 * 180.02562 * 14 13 12 29 29 H 0.96703 * 113.99522 * 89.99506 * 16 15 14 30 30 H 0.96710 * 114.00414 * 90.00004 * 18 17 15 31 31 H 1.08002 * 119.99987 * 0.02562 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6521 -1.5892 1.1315 6 6 1.7007 -0.2382 2.4827 7 7 0.9463 0.8323 2.6033 8 14 2.3229 -1.1190 4.0081 9 1 3.8079 -1.1213 4.0072 10 1 1.8302 -0.4173 5.2205 11 1 1.8258 -2.5183 4.0089 12 6 2.0324 -0.7104 -1.2303 13 6 1.1350 -1.1682 -2.1773 14 6 1.5909 -1.8200 -3.3079 15 6 2.9499 -2.0164 -3.4939 16 8 3.4001 -2.6569 -4.6058 17 6 3.8531 -1.5557 -2.5408 18 8 5.1879 -1.7455 -2.7190 19 6 3.3898 -0.8979 -1.4126 20 1 -0.3633 -1.0278 0.0005 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3634 0.5138 0.8900 23 1 1.6766 1.9564 0.8899 24 1 3.1299 1.4426 0.0005 25 1 1.6766 1.9563 -0.8900 26 1 0.7127 1.1643 3.4844 27 1 0.0755 -1.0161 -2.0333 28 1 0.8878 -2.1762 -4.0463 29 1 3.5840 -2.0689 -5.3511 30 1 5.6273 -1.0273 -3.1948 31 1 4.0890 -0.5358 -0.6733 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260165318.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:15:47 Heat of formation + Delta-G solvation = -68.383493 kcal Electronic energy + Delta-G solvation = -15235.814864 eV Core-core repulsion = 12675.496100 eV Total energy + Delta-G solvation = -2560.318764 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.104 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.73659 -37.15883 -36.54198 -34.35532 -31.30489 -29.73220 -27.65488 -25.80417 -25.19895 -22.28587 -21.90031 -19.37391 -18.32240 -16.99391 -16.09233 -15.62516 -15.28929 -14.73183 -14.27447 -13.68610 -13.20408 -12.93945 -12.23078 -12.02980 -11.60417 -11.35827 -11.31257 -10.93788 -10.88403 -10.69086 -10.47151 -10.23444 -9.91637 -9.66231 -9.31961 -8.92179 -8.38278 -8.22985 -7.71834 -6.02036 -4.12248 1.74935 1.85281 3.30315 3.34411 3.38843 4.14350 4.40973 4.50858 4.57299 5.24348 5.42076 5.76679 5.94857 6.09679 6.28435 6.39731 6.66018 6.73610 6.78732 6.85126 6.93531 7.00357 7.22118 7.32931 7.37407 7.58571 7.69643 7.72667 8.00209 8.13103 8.18089 8.38367 8.87849 9.53300 10.98920 Molecular weight = 222.10amu Principal moments of inertia in cm(-1) A = 0.035745 B = 0.008661 C = 0.007809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.146157 B = 3232.162558 C = 3584.834575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.094 3.906 3 C -0.127 4.127 4 C -0.502 4.502 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.892 3.108 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.277 1.277 12 C -0.017 4.017 13 C -0.126 4.126 14 C -0.135 4.135 15 C 0.044 3.956 16 O -0.493 6.493 17 C 0.071 3.929 18 O -0.493 6.493 19 C -0.121 4.121 20 H 0.029 0.971 21 H 0.013 0.987 22 H 0.087 0.913 23 H 0.088 0.912 24 H 0.027 0.973 25 H 0.010 0.990 26 H 0.261 0.739 27 H 0.130 0.870 28 H 0.121 0.879 29 H 0.374 0.626 30 H 0.377 0.623 31 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.261 0.113 -9.948 10.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.094 3.906 3 C -0.184 4.184 4 C -0.540 4.540 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.720 3.280 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C -0.017 4.017 13 C -0.144 4.144 14 C -0.153 4.153 15 C -0.001 4.001 16 O -0.301 6.301 17 C 0.027 3.973 18 O -0.301 6.301 19 C -0.140 4.140 20 H 0.049 0.951 21 H 0.032 0.968 22 H 0.105 0.895 23 H 0.107 0.893 24 H 0.047 0.953 25 H 0.029 0.971 26 H 0.071 0.929 27 H 0.148 0.852 28 H 0.139 0.861 29 H 0.228 0.772 30 H 0.231 0.769 31 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.015 -0.811 -9.134 9.389 hybrid contribution 0.533 0.268 0.250 0.647 sum 2.548 -0.543 -8.884 9.258 Atomic orbital electron populations 1.21908 0.97440 0.99256 1.00547 1.17291 0.92737 0.92060 0.88539 1.21811 0.98490 0.97573 1.00539 1.21036 1.31529 1.11928 0.89542 0.92493 1.24895 0.94886 0.94928 0.98797 1.69794 1.36679 1.22641 1.23393 0.86645 0.79281 0.79852 0.82202 1.20255 1.21266 1.20271 1.20631 0.91868 0.93644 0.95569 1.21248 1.00671 0.98975 0.93528 1.21233 0.94060 1.00574 0.99445 1.18646 0.91491 1.00977 0.88961 1.84924 1.87341 1.35677 1.22170 1.18853 0.82897 1.00045 0.95552 1.84908 1.18017 1.47701 1.79476 1.21324 0.96856 0.98999 0.96815 0.95147 0.96816 0.89459 0.89310 0.95349 0.97135 0.92883 0.85222 0.86084 0.77227 0.76857 0.84933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 6.91 37.16 0.26 -2.81 16 2 C 0.09 2.21 0.58 -156.81 -0.09 2.12 16 3 C -0.13 -2.90 8.09 37.16 0.30 -2.60 16 4 C -0.50 -13.22 7.60 -34.44 -0.26 -13.48 16 5 H 0.06 1.54 7.50 -52.49 -0.39 1.15 16 6 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 7 N -0.89 -23.66 9.35 55.43 0.52 -23.14 16 8 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 9 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 C -0.02 -0.36 4.72 -104.62 -0.49 -0.85 16 13 C -0.13 -2.39 8.98 -39.57 -0.36 -2.74 16 14 C -0.13 -2.28 9.98 -39.46 -0.39 -2.68 16 15 C 0.04 0.76 6.72 -39.12 -0.26 0.50 16 16 O -0.49 -7.47 13.29 -34.22 -0.45 -7.92 16 17 C 0.07 1.31 6.72 -39.12 -0.26 1.05 16 18 O -0.49 -8.09 13.29 -34.21 -0.45 -8.54 16 19 C -0.12 -2.46 8.55 -39.46 -0.34 -2.80 16 20 H 0.03 0.67 7.68 -51.92 -0.40 0.27 16 21 H 0.01 0.27 7.33 -51.93 -0.38 -0.11 16 22 H 0.09 2.19 6.08 -51.93 -0.32 1.87 16 23 H 0.09 2.22 6.06 -51.93 -0.31 1.91 16 24 H 0.03 0.62 7.59 -51.93 -0.39 0.23 16 25 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 26 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 27 H 0.13 2.31 5.88 -52.49 -0.31 2.00 16 28 H 0.12 1.74 8.06 -52.49 -0.42 1.31 16 29 H 0.37 3.58 9.06 45.56 0.41 4.00 16 30 H 0.38 4.06 9.07 45.56 0.41 4.47 16 31 H 0.13 2.76 7.69 -52.49 -0.40 2.35 16 LS Contribution 259.26 15.07 3.91 3.91 Total: -1.00 -29.74 259.26 -5.56 -35.31 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -2.06 Total: 7.15 kcal Atomic # 6 Polarization: -20.65 SS G_CDS: -1.99 Total: -22.65 kcal Atomic # 7 Polarization: -23.66 SS G_CDS: 0.52 Total: -23.14 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -0.91 Total: -16.46 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -29.74 -5.56 -35.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260165318.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.078 kcal (2) G-P(sol) polarization free energy of solvation -29.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds