Wall clock time and date at job start Thu Apr 9 2020 14:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35895 * 117.00159 * 2 1 4 4 C 1.38759 * 120.05370 * 269.97645 * 3 2 1 5 5 C 1.50696 * 120.02809 * 0.02562 * 4 3 2 6 6 O 1.42906 * 109.46898 * 179.97438 * 5 4 3 7 7 C 1.38126 * 119.94113 * 180.02562 * 4 3 2 8 8 C 1.38290 * 120.05768 * 359.97438 * 7 4 3 9 9 C 1.38245 * 120.10982 * 0.02562 * 8 7 4 10 10 C 1.38164 * 120.05645 * 359.97438 * 9 8 7 11 11 C 1.50705 * 120.02603 * 179.97438 * 10 9 8 12 12 C 1.50695 * 109.47154 * 265.00306 * 11 10 9 13 13 H 1.07993 * 120.00424 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99524 * 180.02562 * 12 11 10 15 15 N 1.31523 * 119.99939 * 180.02562 * 14 12 11 16 16 Si 1.86802 * 120.00296 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.47006 * 90.00121 * 16 14 12 18 18 H 1.48499 * 109.47246 * 210.00206 * 16 14 12 19 19 H 1.48499 * 109.47139 * 330.00431 * 16 14 12 20 20 H 1.09007 * 109.47510 * 60.00105 * 1 2 3 21 21 H 1.09000 * 109.47693 * 180.02562 * 1 2 3 22 22 H 1.08994 * 109.47295 * 300.00011 * 1 2 3 23 23 H 1.09004 * 109.46976 * 299.99554 * 5 4 3 24 24 H 1.09000 * 109.47475 * 59.99757 * 5 4 3 25 25 H 0.96703 * 113.99574 * 180.02562 * 6 5 4 26 26 H 1.07995 * 119.97120 * 179.97438 * 7 4 3 27 27 H 1.07995 * 119.94278 * 180.27458 * 8 7 4 28 28 H 1.07997 * 119.96937 * 179.97438 * 9 8 7 29 29 H 1.08998 * 109.46862 * 25.00901 * 11 10 9 30 30 H 1.09001 * 109.46465 * 145.00014 * 11 10 9 31 31 H 0.96993 * 119.99726 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 2.3618 1.8298 -1.2010 5 6 2.0205 1.1601 -2.5072 6 8 2.4429 1.9889 -3.5920 7 6 2.9894 3.0602 -1.1983 8 6 3.3024 3.6755 0.0000 9 6 2.9887 3.0609 1.1979 10 6 2.3609 1.8301 1.2006 11 6 2.0197 1.1604 2.5068 12 6 3.1181 0.1986 2.8801 13 1 3.9770 0.0833 2.2358 14 6 3.0257 -0.5351 4.0438 15 7 3.9846 -1.3742 4.3700 16 14 1.5396 -0.3363 5.1580 17 1 0.4875 -1.3047 4.7573 18 1 1.9382 -0.5926 6.5653 19 1 1.0116 1.0464 5.0370 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8899 23 1 2.5288 0.1976 -2.5657 24 1 0.9431 1.0062 -2.5660 25 1 2.2542 1.6197 -4.4656 26 1 3.2359 3.5422 -2.1328 27 1 3.7891 4.6396 -0.0001 28 1 3.2345 3.5432 2.1323 29 1 1.9173 1.9154 3.2863 30 1 1.0807 0.6169 2.4020 31 1 3.9194 -1.8906 5.1884 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260195707.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:15:53 Heat of formation + Delta-G solvation = -66.500872 kcal Electronic energy + Delta-G solvation = -15092.319743 eV Core-core repulsion = 12532.082615 eV Total energy + Delta-G solvation = -2560.237127 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.104 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.71268 -36.95989 -36.39163 -33.39659 -31.58235 -30.33772 -27.80893 -26.54758 -25.38985 -22.88199 -21.20675 -19.87032 -17.54709 -16.87808 -16.74881 -15.42641 -15.26973 -15.14965 -14.46509 -14.17248 -13.71505 -13.36770 -13.12780 -12.43926 -12.07856 -11.84866 -11.66810 -11.54549 -11.10438 -10.73539 -10.50838 -10.24163 -10.11684 -9.96914 -9.38819 -9.25699 -8.52971 -8.06204 -7.79939 -6.01729 -3.99110 1.71579 1.97571 3.29691 3.37098 3.39018 4.01659 4.26868 4.44697 4.47339 5.18268 5.29531 5.33814 5.51188 5.54942 5.63529 5.65934 5.73964 5.89641 5.98973 6.16277 6.24762 6.57178 6.78466 6.92845 6.99881 7.05481 7.34101 7.47954 7.64616 7.72694 8.12129 8.55894 9.04438 9.58149 11.11727 Molecular weight = 222.10amu Principal moments of inertia in cm(-1) A = 0.035711 B = 0.008506 C = 0.007778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.883050 B = 3290.840600 C = 3599.209778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.320 6.320 3 C 0.096 3.904 4 C -0.118 4.118 5 C 0.127 3.873 6 O -0.571 6.571 7 C -0.110 4.110 8 C -0.129 4.129 9 C -0.112 4.112 10 C -0.048 4.048 11 C 0.021 3.979 12 C -0.501 4.501 13 H 0.073 0.927 14 C 0.069 3.931 15 N -0.901 5.901 16 Si 0.876 3.124 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.266 1.266 20 H 0.035 0.965 21 H 0.089 0.911 22 H 0.046 0.954 23 H 0.062 0.938 24 H 0.052 0.948 25 H 0.377 0.623 26 H 0.126 0.874 27 H 0.117 0.883 28 H 0.123 0.877 29 H 0.026 0.974 30 H 0.024 0.976 31 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.078 6.540 -11.658 15.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.237 6.237 3 C 0.052 3.948 4 C -0.118 4.118 5 C 0.050 3.950 6 O -0.376 6.376 7 C -0.128 4.128 8 C -0.147 4.147 9 C -0.130 4.130 10 C -0.049 4.049 11 C -0.016 4.016 12 C -0.539 4.539 13 H 0.091 0.909 14 C -0.132 4.132 15 N -0.540 5.540 16 Si 0.703 3.297 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.191 1.191 20 H 0.054 0.946 21 H 0.108 0.892 22 H 0.065 0.935 23 H 0.080 0.920 24 H 0.070 0.930 25 H 0.224 0.776 26 H 0.144 0.856 27 H 0.135 0.865 28 H 0.141 0.859 29 H 0.044 0.956 30 H 0.042 0.958 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.747 6.608 -11.014 14.509 hybrid contribution -0.986 -0.314 0.271 1.070 sum -7.733 6.294 -10.744 14.658 Atomic orbital electron populations 1.22892 0.80433 1.02672 0.99880 1.86107 1.18597 1.24771 1.94196 1.18218 0.99125 0.86421 0.91020 1.19874 1.03070 0.95953 0.92913 1.20711 0.97640 0.92400 0.84256 1.86444 1.85217 1.49112 1.16818 1.20640 0.99614 0.94549 0.97994 1.21099 1.01074 1.00030 0.92521 1.21019 0.98853 0.95167 0.97960 1.20558 0.95407 0.92881 0.96031 1.18706 0.97868 0.95802 0.89178 1.20845 1.05146 1.21033 1.06830 0.90864 1.24962 0.96002 0.94822 0.97440 1.69901 1.32958 1.26235 1.24921 0.86844 0.83633 0.79034 0.80203 1.20221 1.21251 1.19082 0.94641 0.89246 0.93547 0.91991 0.93036 0.77610 0.85576 0.86482 0.85890 0.95576 0.95783 0.92705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.56 10.80 101.05 1.09 1.65 16 2 O -0.32 -6.56 9.12 -19.41 -0.18 -6.73 16 3 C 0.10 1.98 5.67 -39.21 -0.22 1.75 16 4 C -0.12 -2.12 5.89 -104.47 -0.62 -2.74 16 5 C 0.13 1.83 6.91 36.00 0.25 2.08 16 6 O -0.57 -7.22 12.14 -35.23 -0.43 -7.64 16 7 C -0.11 -1.88 9.37 -39.60 -0.37 -2.25 16 8 C -0.13 -2.19 10.04 -39.56 -0.40 -2.58 16 9 C -0.11 -2.17 9.68 -39.61 -0.38 -2.56 16 10 C -0.05 -1.07 5.08 -104.47 -0.53 -1.60 16 11 C 0.02 0.53 3.89 -29.04 -0.11 0.42 16 12 C -0.50 -14.66 9.65 -34.44 -0.33 -14.99 16 13 H 0.07 2.38 7.98 -52.49 -0.42 1.96 16 14 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 15 N -0.90 -28.18 13.96 55.43 0.77 -27.41 16 16 Si 0.88 21.71 27.47 -169.99 -4.67 17.04 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 19 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 20 H 0.04 0.46 7.32 -51.92 -0.38 0.08 16 21 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 22 H 0.05 0.74 7.18 -51.93 -0.37 0.37 16 23 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.05 0.66 7.32 -51.93 -0.38 0.28 16 25 H 0.38 2.73 9.12 45.56 0.42 3.15 16 26 H 0.13 1.96 7.00 -52.49 -0.37 1.60 16 27 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 28 H 0.12 2.23 8.06 -52.49 -0.42 1.81 16 29 H 0.03 0.63 7.11 -51.93 -0.37 0.26 16 30 H 0.02 0.58 5.85 -51.93 -0.30 0.28 16 31 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 265.49 15.07 4.00 4.00 Total: -1.00 -33.68 265.49 -5.26 -38.94 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -3.03 Total: 0.70 kcal Atomic # 6 Polarization: -17.17 SS G_CDS: -1.72 Total: -18.89 kcal Atomic # 7 Polarization: -28.18 SS G_CDS: 0.77 Total: -27.41 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: -0.60 Total: -14.38 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.67 Total: 17.04 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -33.68 -5.26 -38.94 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260195707.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.562 kcal (2) G-P(sol) polarization free energy of solvation -33.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds