Wall clock time and date at job start Thu Apr 9 2020 14:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35895 * 117.00159 * 2 1 4 4 C 1.38759 * 120.05370 * 269.97645 * 3 2 1 5 5 C 1.50696 * 120.02809 * 0.02562 * 4 3 2 6 6 O 1.42906 * 109.46898 * 179.97438 * 5 4 3 7 7 C 1.38126 * 119.94113 * 180.02562 * 4 3 2 8 8 C 1.38290 * 120.05768 * 359.97438 * 7 4 3 9 9 C 1.38245 * 120.10982 * 0.02562 * 8 7 4 10 10 C 1.38164 * 120.05645 * 359.97438 * 9 8 7 11 11 C 1.50705 * 120.02603 * 179.97438 * 10 9 8 12 12 C 1.50695 * 109.47154 * 265.00306 * 11 10 9 13 13 H 1.07993 * 120.00424 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99524 * 180.02562 * 12 11 10 15 15 N 1.31523 * 119.99939 * 180.02562 * 14 12 11 16 16 Si 1.86802 * 120.00296 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.47006 * 90.00121 * 16 14 12 18 18 H 1.48499 * 109.47246 * 210.00206 * 16 14 12 19 19 H 1.48499 * 109.47139 * 330.00431 * 16 14 12 20 20 H 1.09007 * 109.47510 * 60.00105 * 1 2 3 21 21 H 1.09000 * 109.47693 * 180.02562 * 1 2 3 22 22 H 1.08994 * 109.47295 * 300.00011 * 1 2 3 23 23 H 1.09004 * 109.46976 * 299.99554 * 5 4 3 24 24 H 1.09000 * 109.47475 * 59.99757 * 5 4 3 25 25 H 0.96703 * 113.99574 * 180.02562 * 6 5 4 26 26 H 1.07995 * 119.97120 * 179.97438 * 7 4 3 27 27 H 1.07995 * 119.94278 * 180.27458 * 8 7 4 28 28 H 1.07997 * 119.96937 * 179.97438 * 9 8 7 29 29 H 1.08998 * 109.46862 * 25.00901 * 11 10 9 30 30 H 1.09001 * 109.46465 * 145.00014 * 11 10 9 31 31 H 0.96993 * 119.99726 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 2.3618 1.8298 -1.2010 5 6 2.0205 1.1601 -2.5072 6 8 2.4429 1.9889 -3.5920 7 6 2.9894 3.0602 -1.1983 8 6 3.3024 3.6755 0.0000 9 6 2.9887 3.0609 1.1979 10 6 2.3609 1.8301 1.2006 11 6 2.0197 1.1604 2.5068 12 6 3.1181 0.1986 2.8801 13 1 3.9770 0.0833 2.2358 14 6 3.0257 -0.5351 4.0438 15 7 3.9846 -1.3742 4.3700 16 14 1.5396 -0.3363 5.1580 17 1 0.4875 -1.3047 4.7573 18 1 1.9382 -0.5926 6.5653 19 1 1.0116 1.0464 5.0370 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8899 23 1 2.5288 0.1976 -2.5657 24 1 0.9431 1.0062 -2.5660 25 1 2.2542 1.6197 -4.4656 26 1 3.2359 3.5422 -2.1328 27 1 3.7891 4.6396 -0.0001 28 1 3.2345 3.5432 2.1323 29 1 1.9173 1.9154 3.2863 30 1 1.0807 0.6169 2.4020 31 1 3.9194 -1.8906 5.1884 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260195707.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:15:53 Heat of formation + Delta-G solvation = -91.358101 kcal Electronic energy + Delta-G solvation = -15093.397633 eV Core-core repulsion = 12532.082615 eV Total energy + Delta-G solvation = -2561.315018 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.104 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.13518 -38.23409 -37.59997 -35.37560 -33.40215 -31.75974 -29.51871 -27.92509 -26.66178 -24.79195 -22.62431 -21.43954 -18.99412 -18.75602 -18.16334 -16.80521 -16.69763 -16.48935 -16.10406 -15.62513 -15.03587 -14.91793 -14.64889 -14.21446 -13.76129 -13.49912 -13.20449 -12.86370 -12.63157 -12.45023 -12.03779 -11.87650 -11.78500 -11.56434 -11.20391 -10.80121 -10.71873 -9.45221 -9.33308 -8.28881 -6.32752 0.31901 0.50168 1.33545 1.36076 1.47572 2.34664 2.64173 3.04092 3.05207 3.26021 3.96719 4.13786 4.19630 4.29968 4.43204 4.48562 4.53891 4.58877 4.66923 4.74926 4.85533 5.00063 5.08927 5.22246 5.54550 5.56666 5.60955 5.82454 5.95766 6.26256 6.67357 6.74128 6.91515 7.28787 8.88492 Molecular weight = 222.10amu Principal moments of inertia in cm(-1) A = 0.035711 B = 0.008506 C = 0.007778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.883050 B = 3290.840600 C = 3599.209778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.350 6.350 3 C 0.081 3.919 4 C -0.127 4.127 5 C 0.134 3.866 6 O -0.579 6.579 7 C -0.106 4.106 8 C -0.122 4.122 9 C -0.124 4.124 10 C -0.090 4.090 11 C 0.031 3.969 12 C -0.509 4.509 13 H 0.020 0.980 14 C 0.006 3.994 15 N -0.951 5.951 16 Si 0.950 3.050 17 H -0.265 1.265 18 H -0.280 1.280 19 H -0.245 1.245 20 H 0.063 0.937 21 H 0.108 0.892 22 H 0.038 0.962 23 H 0.058 0.942 24 H 0.071 0.929 25 H 0.402 0.598 26 H 0.148 0.852 27 H 0.154 0.846 28 H 0.128 0.872 29 H 0.031 0.969 30 H 0.027 0.973 31 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.758 7.910 -12.739 17.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.267 6.267 3 C 0.038 3.962 4 C -0.127 4.127 5 C 0.057 3.943 6 O -0.388 6.388 7 C -0.124 4.124 8 C -0.140 4.140 9 C -0.142 4.142 10 C -0.091 4.091 11 C -0.006 4.006 12 C -0.547 4.547 13 H 0.038 0.962 14 C -0.190 4.190 15 N -0.592 5.592 16 Si 0.773 3.227 17 H -0.189 1.189 18 H -0.206 1.206 19 H -0.169 1.169 20 H 0.082 0.918 21 H 0.126 0.874 22 H 0.057 0.943 23 H 0.076 0.924 24 H 0.089 0.911 25 H 0.253 0.747 26 H 0.165 0.835 27 H 0.171 0.829 28 H 0.146 0.854 29 H 0.049 0.951 30 H 0.045 0.955 31 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.439 7.988 -12.136 16.802 hybrid contribution -0.384 -0.737 0.454 0.947 sum -8.823 7.251 -11.682 16.337 Atomic orbital electron populations 1.23143 0.78160 1.04281 1.00894 1.86036 1.21050 1.25223 1.94406 1.18409 0.99673 0.86515 0.91594 1.20250 1.02407 0.96330 0.93737 1.20570 0.98706 0.91735 0.83315 1.86366 1.85331 1.49148 1.17917 1.20996 0.98314 0.94170 0.98898 1.21452 0.99999 1.01114 0.91412 1.21192 0.98924 0.94655 0.99469 1.20544 0.98485 0.94601 0.95439 1.18488 0.96103 0.94890 0.91101 1.21038 1.05011 1.22397 1.06220 0.96157 1.25978 0.99622 0.94188 0.99243 1.70069 1.35605 1.27635 1.25906 0.85662 0.79189 0.80291 0.77563 1.18946 1.20602 1.16851 0.91815 0.87402 0.94294 0.92389 0.91069 0.74722 0.83456 0.82877 0.85375 0.95087 0.95483 0.92416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.86 10.80 113.37 1.22 2.09 16 2 O -0.35 -14.32 9.12 -92.37 -0.84 -15.16 16 3 C 0.08 3.36 5.67 22.51 0.13 3.48 16 4 C -0.13 -4.38 5.89 -19.77 -0.12 -4.50 16 5 C 0.13 3.55 6.91 71.23 0.49 4.04 16 6 O -0.58 -12.72 12.14 -148.98 -1.81 -14.53 16 7 C -0.11 -3.37 9.37 22.26 0.21 -3.16 16 8 C -0.12 -3.87 10.04 22.28 0.22 -3.64 16 9 C -0.12 -4.77 9.68 22.25 0.22 -4.56 16 10 C -0.09 -4.02 5.08 -19.77 -0.10 -4.12 16 11 C 0.03 1.56 3.89 29.10 0.11 1.67 16 12 C -0.51 -30.94 9.65 25.60 0.25 -30.70 16 13 H 0.02 1.39 7.98 -2.91 -0.02 1.37 16 14 C 0.01 0.37 5.47 84.65 0.46 0.83 16 15 N -0.95 -61.47 13.96 21.45 0.30 -61.17 16 16 Si 0.95 44.92 27.47 68.60 1.88 46.80 16 17 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 18 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 19 H -0.25 -10.66 6.54 99.48 0.65 -10.01 16 20 H 0.06 1.51 7.32 -2.38 -0.02 1.49 16 21 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 22 H 0.04 1.20 7.18 -2.39 -0.02 1.18 16 23 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 24 H 0.07 1.60 7.32 -2.39 -0.02 1.58 16 25 H 0.40 4.40 9.12 -74.06 -0.68 3.73 16 26 H 0.15 4.05 7.00 -2.91 -0.02 4.03 16 27 H 0.15 3.67 8.06 -2.91 -0.02 3.64 16 28 H 0.13 4.61 8.06 -2.91 -0.02 4.59 16 29 H 0.03 1.48 7.11 -2.39 -0.02 1.47 16 30 H 0.03 1.31 5.85 -2.39 -0.01 1.30 16 31 H 0.27 15.97 8.31 -92.71 -0.77 15.20 16 Total: -1.00 -75.22 265.49 3.04 -72.19 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: 0.41 Total: 10.44 kcal Atomic # 6 Polarization: -41.66 SS G_CDS: 3.10 Total: -38.56 kcal Atomic # 7 Polarization: -61.47 SS G_CDS: 0.30 Total: -61.17 kcal Atomic # 8 Polarization: -27.05 SS G_CDS: -2.65 Total: -29.70 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 1.88 Total: 46.80 kcal Total: -75.22 3.04 -72.19 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260195707.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.173 kcal (2) G-P(sol) polarization free energy of solvation -75.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds