Wall clock time and date at job start Thu Apr 9 2020 14:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42904 * 114.00221 * 2 1 4 4 C 1.52999 * 109.47205 * 180.02562 * 3 2 1 5 5 H 1.09005 * 109.47006 * 305.75552 * 4 3 2 6 6 C 1.50699 * 109.46955 * 65.75577 * 4 3 2 7 7 H 1.07990 * 119.99988 * 26.25566 * 6 4 3 8 8 C 1.37877 * 119.99561 * 206.25128 * 6 4 3 9 9 N 1.31513 * 120.00309 * 354.44502 * 8 6 4 10 10 Si 1.86803 * 119.99699 * 174.71678 * 8 6 4 11 11 H 1.48502 * 109.47235 * 269.72592 * 10 8 6 12 12 H 1.48503 * 109.47054 * 29.72409 * 10 8 6 13 13 H 1.48501 * 109.47195 * 149.72318 * 10 8 6 14 14 C 1.50695 * 109.47048 * 185.75954 * 4 3 2 15 15 C 1.38272 * 119.94196 * 299.72523 * 14 4 3 16 16 C 1.38149 * 120.05405 * 179.72592 * 15 14 4 17 17 C 1.38734 * 119.94333 * 0.54997 * 16 15 14 18 18 O 1.35898 * 120.05231 * 179.74928 * 17 16 15 19 19 C 1.38732 * 119.88713 * 359.72111 * 17 16 15 20 20 C 1.38143 * 119.94633 * 0.02562 * 19 17 16 21 21 H 1.09001 * 109.47050 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47216 * 299.99913 * 1 2 3 23 23 H 1.09004 * 109.47040 * 59.99604 * 1 2 3 24 24 H 1.09007 * 109.46269 * 60.00113 * 3 2 1 25 25 H 1.08994 * 109.47025 * 300.00524 * 3 2 1 26 26 H 0.96996 * 120.00275 * 359.52751 * 9 8 6 27 27 H 1.08001 * 119.96969 * 0.02562 * 15 14 4 28 28 H 1.07997 * 120.02524 * 180.27333 * 16 15 14 29 29 H 0.96698 * 113.99609 * 269.97175 * 18 17 16 30 30 H 1.07998 * 120.02526 * 179.97438 * 19 17 16 31 31 H 1.07997 * 119.97552 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.8506 0.5571 0.8331 6 6 3.9896 0.5636 -1.2964 7 1 3.3845 0.6652 -2.1851 8 6 5.1776 -0.1343 -1.3473 9 7 5.9671 -0.1661 -0.2960 10 14 5.6693 -1.0284 -2.9120 11 1 5.1484 -2.4185 -2.8723 12 1 5.1004 -0.3199 -4.0866 13 1 7.1501 -1.0575 -3.0210 14 6 4.1479 2.5541 0.1419 15 6 3.8934 3.5262 -0.8079 16 6 4.4491 4.7842 -0.6765 17 6 5.2723 5.0682 0.4036 18 8 5.8241 6.3034 0.5323 19 6 5.5305 4.0894 1.3521 20 6 4.9683 2.8346 1.2190 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.6886 1.8463 0.8901 25 1 1.6886 1.8464 -0.8899 26 1 5.7170 0.3071 0.5129 27 1 3.2558 3.3033 -1.6506 28 1 4.2465 5.5444 -1.4163 29 1 6.6864 6.3954 0.1044 30 1 6.1713 4.3080 2.1936 31 1 5.1687 2.0724 1.9574 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260217690.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:15:57 Heat of formation + Delta-G solvation = -75.993224 kcal Electronic energy + Delta-G solvation = -14994.388839 eV Core-core repulsion = 12433.740092 eV Total energy + Delta-G solvation = -2560.648747 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.104 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.18865 -37.39268 -36.28436 -33.62651 -30.83631 -30.30420 -27.71841 -25.77016 -24.16658 -22.55830 -21.85426 -20.11615 -17.90986 -16.98202 -15.91275 -15.26545 -15.12873 -14.76936 -14.51202 -13.92793 -13.69086 -13.09958 -13.00006 -12.63217 -12.04791 -11.58369 -11.46327 -11.21259 -10.91052 -10.78223 -10.45361 -10.13238 -9.98340 -9.59597 -9.09852 -8.65992 -8.43160 -8.32194 -7.59063 -6.36924 -4.06631 1.95420 2.03247 3.44798 3.47465 3.62838 4.27630 4.52162 4.55398 4.78644 5.37832 5.50617 5.52323 5.66893 5.71836 5.96412 6.00673 6.04818 6.12426 6.18482 6.20007 6.51128 6.56143 6.65515 7.01580 7.05377 7.15542 7.48342 7.58193 7.92948 8.09230 8.15315 8.41944 8.84303 9.62456 11.02384 Molecular weight = 222.10amu Principal moments of inertia in cm(-1) A = 0.019735 B = 0.010827 C = 0.007976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.479098 B = 2585.592899 C = 3509.692306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.372 6.372 3 C 0.085 3.915 4 C 0.057 3.943 5 H 0.050 0.950 6 C -0.574 4.574 7 H 0.052 0.948 8 C 0.023 3.977 9 N -0.906 5.906 10 Si 1.070 2.930 11 H -0.287 1.287 12 H -0.289 1.289 13 H -0.286 1.286 14 C -0.036 4.036 15 C -0.095 4.095 16 C -0.149 4.149 17 C 0.066 3.934 18 O -0.506 6.506 19 C -0.143 4.143 20 C -0.111 4.111 21 H 0.077 0.923 22 H 0.029 0.971 23 H 0.032 0.968 24 H 0.022 0.978 25 H 0.037 0.963 26 H 0.271 0.729 27 H 0.120 0.880 28 H 0.116 0.884 29 H 0.379 0.621 30 H 0.116 0.884 31 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.193 6.376 0.497 7.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.290 6.290 3 C 0.009 3.991 4 C 0.038 3.962 5 H 0.068 0.932 6 C -0.611 4.611 7 H 0.071 0.929 8 C -0.182 4.182 9 N -0.542 5.542 10 Si 0.899 3.101 11 H -0.213 1.213 12 H -0.215 1.215 13 H -0.212 1.212 14 C -0.036 4.036 15 C -0.113 4.113 16 C -0.167 4.167 17 C 0.022 3.978 18 O -0.315 6.315 19 C -0.162 4.162 20 C -0.129 4.129 21 H 0.096 0.904 22 H 0.048 0.952 23 H 0.051 0.949 24 H 0.041 0.959 25 H 0.055 0.945 26 H 0.083 0.917 27 H 0.138 0.862 28 H 0.134 0.866 29 H 0.233 0.767 30 H 0.134 0.866 31 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.408 5.378 0.142 6.368 hybrid contribution -0.874 1.169 0.353 1.502 sum -4.282 6.547 0.495 7.839 Atomic orbital electron populations 1.22642 0.83397 1.01689 0.98898 1.88034 1.17312 1.28602 1.95027 1.22548 0.95982 0.83266 0.97333 1.18019 0.88738 0.89322 1.00091 0.93223 1.21709 1.08562 1.36133 0.94715 0.92942 1.25792 0.93080 0.95976 1.03370 1.70758 1.37613 1.41916 1.03876 0.83527 0.76038 0.76235 0.74349 1.21334 1.21516 1.21186 1.20694 0.95239 0.96111 0.91590 1.20832 1.00026 0.91736 0.98752 1.21273 1.00463 0.97324 0.97657 1.18300 0.99154 0.84501 0.95848 1.84793 1.38276 1.29316 1.79091 1.21238 1.01900 0.93261 0.99806 1.20955 0.98195 0.95473 0.98282 0.90444 0.95202 0.94912 0.95947 0.94513 0.91733 0.86182 0.86611 0.76661 0.86583 0.86378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.61 16 2 O -0.37 -8.11 10.47 -35.23 -0.37 -8.48 16 3 C 0.09 1.82 5.03 37.16 0.19 2.01 16 4 C 0.06 1.39 1.83 -92.93 -0.17 1.22 16 5 H 0.05 1.32 6.69 -51.93 -0.35 0.97 16 6 C -0.57 -15.59 7.71 -34.44 -0.27 -15.86 16 7 H 0.05 1.44 7.82 -52.49 -0.41 1.03 16 8 C 0.02 0.64 5.45 -17.82 -0.10 0.55 16 9 N -0.91 -26.74 13.61 55.43 0.75 -25.99 16 10 Si 1.07 25.23 29.91 -169.99 -5.08 20.14 16 11 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16 13 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 14 C -0.04 -0.79 4.64 -104.60 -0.49 -1.28 16 15 C -0.10 -1.96 8.86 -39.60 -0.35 -2.31 16 16 C -0.15 -2.74 9.99 -39.43 -0.39 -3.14 16 17 C 0.07 1.20 6.70 -39.22 -0.26 0.93 16 18 O -0.51 -7.91 13.50 -19.42 -0.26 -8.17 16 19 C -0.14 -2.69 9.99 -39.43 -0.39 -3.09 16 20 C -0.11 -2.31 9.04 -39.61 -0.36 -2.67 16 21 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 22 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 23 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.04 0.76 7.60 -51.93 -0.39 0.36 16 26 H 0.27 7.84 5.94 -40.82 -0.24 7.60 16 27 H 0.12 2.39 7.65 -52.49 -0.40 1.99 16 28 H 0.12 1.85 8.06 -52.49 -0.42 1.42 16 29 H 0.38 4.13 9.06 45.56 0.41 4.55 16 30 H 0.12 1.91 8.06 -52.49 -0.42 1.48 16 31 H 0.12 2.41 7.81 -52.49 -0.41 2.00 16 LS Contribution 270.33 15.07 4.07 4.07 Total: -1.00 -31.43 270.33 -5.49 -36.92 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -3.13 Total: 3.52 kcal Atomic # 6 Polarization: -20.54 SS G_CDS: -1.48 Total: -22.02 kcal Atomic # 7 Polarization: -26.74 SS G_CDS: 0.75 Total: -25.99 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: -0.63 Total: -16.65 kcal Atomic # 14 Polarization: 25.23 SS G_CDS: -5.08 Total: 20.14 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -31.43 -5.49 -36.92 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260217690.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.070 kcal (2) G-P(sol) polarization free energy of solvation -31.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds