Wall clock time and date at job start Thu Apr 9 2020 14:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42904 * 114.00221 * 2 1 4 4 C 1.52999 * 109.47205 * 180.02562 * 3 2 1 5 5 H 1.09005 * 109.47006 * 305.75552 * 4 3 2 6 6 C 1.50699 * 109.46955 * 65.75577 * 4 3 2 7 7 H 1.07990 * 119.99988 * 26.25566 * 6 4 3 8 8 C 1.37877 * 119.99561 * 206.25128 * 6 4 3 9 9 N 1.31513 * 120.00309 * 354.44502 * 8 6 4 10 10 Si 1.86803 * 119.99699 * 174.71678 * 8 6 4 11 11 H 1.48502 * 109.47235 * 269.72592 * 10 8 6 12 12 H 1.48503 * 109.47054 * 29.72409 * 10 8 6 13 13 H 1.48501 * 109.47195 * 149.72318 * 10 8 6 14 14 C 1.50695 * 109.47048 * 185.75954 * 4 3 2 15 15 C 1.38272 * 119.94196 * 299.72523 * 14 4 3 16 16 C 1.38149 * 120.05405 * 179.72592 * 15 14 4 17 17 C 1.38734 * 119.94333 * 0.54997 * 16 15 14 18 18 O 1.35898 * 120.05231 * 179.74928 * 17 16 15 19 19 C 1.38732 * 119.88713 * 359.72111 * 17 16 15 20 20 C 1.38143 * 119.94633 * 0.02562 * 19 17 16 21 21 H 1.09001 * 109.47050 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47216 * 299.99913 * 1 2 3 23 23 H 1.09004 * 109.47040 * 59.99604 * 1 2 3 24 24 H 1.09007 * 109.46269 * 60.00113 * 3 2 1 25 25 H 1.08994 * 109.47025 * 300.00524 * 3 2 1 26 26 H 0.96996 * 120.00275 * 359.52751 * 9 8 6 27 27 H 1.08001 * 119.96969 * 0.02562 * 15 14 4 28 28 H 1.07997 * 120.02524 * 180.27333 * 16 15 14 29 29 H 0.96698 * 113.99609 * 269.97175 * 18 17 16 30 30 H 1.07998 * 120.02526 * 179.97438 * 19 17 16 31 31 H 1.07997 * 119.97552 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.8506 0.5571 0.8331 6 6 3.9896 0.5636 -1.2964 7 1 3.3845 0.6652 -2.1851 8 6 5.1776 -0.1343 -1.3473 9 7 5.9671 -0.1661 -0.2960 10 14 5.6693 -1.0284 -2.9120 11 1 5.1484 -2.4185 -2.8723 12 1 5.1004 -0.3199 -4.0866 13 1 7.1501 -1.0575 -3.0210 14 6 4.1479 2.5541 0.1419 15 6 3.8934 3.5262 -0.8079 16 6 4.4491 4.7842 -0.6765 17 6 5.2723 5.0682 0.4036 18 8 5.8241 6.3034 0.5323 19 6 5.5305 4.0894 1.3521 20 6 4.9683 2.8346 1.2190 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.6886 1.8463 0.8901 25 1 1.6886 1.8464 -0.8899 26 1 5.7170 0.3071 0.5129 27 1 3.2558 3.3033 -1.6506 28 1 4.2465 5.5444 -1.4163 29 1 6.6864 6.3954 0.1044 30 1 6.1713 4.3080 2.1936 31 1 5.1687 2.0724 1.9574 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260217690.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:15:56 Heat of formation + Delta-G solvation = -97.642170 kcal Electronic energy + Delta-G solvation = -14995.327608 eV Core-core repulsion = 12433.740092 eV Total energy + Delta-G solvation = -2561.587515 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.104 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.69707 -38.95522 -37.74122 -35.47635 -32.66312 -31.83588 -29.23846 -27.30928 -26.06346 -24.17193 -23.40965 -21.82969 -19.27974 -18.93621 -17.50329 -16.88604 -16.56201 -16.23855 -16.00301 -15.68514 -15.37272 -14.81321 -14.54288 -14.19946 -13.71893 -13.14365 -12.98005 -12.86635 -12.67436 -12.38062 -12.07407 -11.94390 -11.55524 -11.25818 -10.84634 -10.51137 -10.41711 -9.84647 -9.21237 -8.52929 -6.23058 0.44311 0.49775 1.53938 1.62353 1.78751 2.59593 2.78805 3.02664 3.31946 3.41510 3.99274 4.11166 4.27610 4.31988 4.42735 4.54227 4.56503 4.61260 4.66765 4.79771 4.84755 5.07669 5.07907 5.26146 5.50512 5.56434 5.84220 5.99347 6.12118 6.27479 6.45094 6.71018 6.90190 7.53192 8.86623 Molecular weight = 222.10amu Principal moments of inertia in cm(-1) A = 0.019735 B = 0.010827 C = 0.007976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.479098 B = 2585.592899 C = 3509.692306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.410 6.410 3 C 0.093 3.907 4 C 0.055 3.945 5 H 0.014 0.986 6 C -0.576 4.576 7 H 0.045 0.955 8 C -0.028 4.028 9 N -0.937 5.937 10 Si 1.110 2.890 11 H -0.279 1.279 12 H -0.271 1.271 13 H -0.287 1.287 14 C -0.061 4.061 15 C -0.104 4.104 16 C -0.145 4.145 17 C 0.079 3.921 18 O -0.504 6.504 19 C -0.146 4.146 20 C -0.125 4.125 21 H 0.096 0.904 22 H 0.048 0.952 23 H 0.045 0.955 24 H 0.038 0.962 25 H 0.044 0.956 26 H 0.263 0.737 27 H 0.121 0.879 28 H 0.146 0.854 29 H 0.405 0.595 30 H 0.139 0.861 31 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.544 7.934 -0.268 9.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.329 6.329 3 C 0.016 3.984 4 C 0.036 3.964 5 H 0.032 0.968 6 C -0.614 4.614 7 H 0.063 0.937 8 C -0.227 4.227 9 N -0.575 5.575 10 Si 0.933 3.067 11 H -0.205 1.205 12 H -0.196 1.196 13 H -0.213 1.213 14 C -0.061 4.061 15 C -0.123 4.123 16 C -0.164 4.164 17 C 0.035 3.965 18 O -0.317 6.317 19 C -0.164 4.164 20 C -0.144 4.144 21 H 0.114 0.886 22 H 0.067 0.933 23 H 0.064 0.936 24 H 0.056 0.944 25 H 0.062 0.938 26 H 0.073 0.927 27 H 0.139 0.861 28 H 0.163 0.837 29 H 0.263 0.737 30 H 0.157 0.843 31 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -3.772 6.957 -0.626 7.938 hybrid contribution -0.821 0.797 0.652 1.317 sum -4.593 7.754 0.026 9.012 Atomic orbital electron populations 1.22918 0.80375 1.03513 1.00433 1.87968 1.20741 1.28892 1.95326 1.22400 0.94103 0.83578 0.98299 1.17943 0.90959 0.90064 0.97397 0.96800 1.21954 1.08013 1.35918 0.95473 0.93657 1.27037 0.93552 0.96821 1.05301 1.70844 1.38614 1.43590 1.04409 0.83011 0.75773 0.75847 0.72023 1.20494 1.19551 1.21252 1.20494 0.96627 0.95670 0.93334 1.20886 1.00589 0.92409 0.98374 1.21535 0.99567 0.96969 0.98282 1.18339 0.98292 0.84929 0.94941 1.84732 1.39951 1.27475 1.79493 1.21461 1.01722 0.92438 1.00792 1.20987 0.98646 0.96526 0.98214 0.88602 0.93325 0.93589 0.94410 0.93825 0.92679 0.86108 0.83661 0.73693 0.84283 0.87306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.72 11.01 113.37 1.25 1.97 16 2 O -0.41 -17.92 10.47 -148.98 -1.56 -19.48 16 3 C 0.09 3.98 5.03 71.98 0.36 4.34 16 4 C 0.06 2.77 1.83 -12.29 -0.02 2.75 16 5 H 0.01 0.78 6.69 -2.38 -0.02 0.76 16 6 C -0.58 -31.86 7.71 25.60 0.20 -31.66 16 7 H 0.05 2.50 7.82 -2.92 -0.02 2.48 16 8 C -0.03 -1.61 5.45 84.65 0.46 -1.15 16 9 N -0.94 -56.89 13.61 21.45 0.29 -56.60 16 10 Si 1.11 51.00 29.91 68.60 2.05 53.05 16 11 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 12 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 13 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 14 C -0.06 -2.73 4.64 -19.85 -0.09 -2.82 16 15 C -0.10 -4.19 8.86 22.26 0.20 -3.99 16 16 C -0.15 -4.98 9.99 22.37 0.22 -4.75 16 17 C 0.08 2.66 6.70 22.51 0.15 2.81 16 18 O -0.50 -13.75 13.50 -92.41 -1.25 -15.00 16 19 C -0.15 -5.24 9.99 22.37 0.22 -5.01 16 20 C -0.13 -5.30 9.04 22.25 0.20 -5.10 16 21 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 22 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 23 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 24 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 25 H 0.04 1.78 7.60 -2.39 -0.02 1.76 16 26 H 0.26 15.88 5.94 -92.71 -0.55 15.33 16 27 H 0.12 4.72 7.65 -2.91 -0.02 4.70 16 28 H 0.15 4.07 8.06 -2.91 -0.02 4.05 16 29 H 0.41 7.06 9.06 -74.06 -0.67 6.39 16 30 H 0.14 4.26 8.06 -2.91 -0.02 4.24 16 31 H 0.11 4.66 7.81 -2.91 -0.02 4.64 16 Total: -1.00 -67.99 270.33 3.36 -64.64 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: 0.67 Total: 16.02 kcal Atomic # 6 Polarization: -45.78 SS G_CDS: 3.15 Total: -42.63 kcal Atomic # 7 Polarization: -56.89 SS G_CDS: 0.29 Total: -56.60 kcal Atomic # 8 Polarization: -31.67 SS G_CDS: -2.81 Total: -34.48 kcal Atomic # 14 Polarization: 51.00 SS G_CDS: 2.05 Total: 53.05 kcal Total: -67.99 3.36 -64.64 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260217690.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.006 kcal (2) G-P(sol) polarization free energy of solvation -67.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds