Wall clock time and date at job start Thu Apr 9 2020 14:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09000 * 110.36808 * 60.89548 * 9 7 2 11 11 C 1.54382 * 110.41327 * 298.54933 * 9 7 2 12 12 C 1.54266 * 105.06212 * 217.37099 * 11 9 7 13 13 C 1.54381 * 105.05708 * 359.97438 * 12 11 9 14 14 N 1.48561 * 110.41049 * 183.37374 * 9 7 2 15 15 C 1.46901 * 111.00120 * 277.81955 * 14 9 7 16 16 C 1.50697 * 109.46985 * 170.00103 * 15 14 9 17 17 C 1.41383 * 126.80144 * 94.71367 * 16 15 14 18 18 C 1.35451 * 103.98303 * 179.88624 * 17 16 15 19 19 O 1.34043 * 106.44573 * 0.36797 * 18 17 16 20 20 N 1.20919 * 111.57049 * 359.74589 * 19 18 17 21 21 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 22 22 H 1.09003 * 110.32347 * 336.26241 * 11 9 7 23 23 H 1.08997 * 110.33077 * 98.37120 * 11 9 7 24 24 H 1.08998 * 110.32425 * 118.89058 * 12 11 9 25 25 H 1.08996 * 110.32327 * 241.10476 * 12 11 9 26 26 H 1.09005 * 110.41042 * 142.63457 * 13 12 11 27 27 H 1.09001 * 110.41305 * 265.07187 * 13 12 11 28 28 H 1.09008 * 109.46712 * 290.00135 * 15 14 9 29 29 H 1.08996 * 109.46607 * 49.99926 * 15 14 9 30 30 H 1.07994 * 128.01000 * 0.02562 * 17 16 15 31 31 H 1.08006 * 126.77580 * 180.09249 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6306 -2.5790 -0.8931 11 6 0.3835 -2.6200 1.2707 12 6 0.4621 -4.1081 1.6698 13 6 1.3701 -4.7612 0.6057 14 7 2.1957 -3.6428 0.0808 15 6 2.7429 -3.9689 -1.2430 16 6 3.8695 -4.9582 -1.0910 17 6 3.7801 -6.3656 -1.1920 18 6 5.0492 -6.7900 -0.9822 19 8 5.7869 -5.6909 -0.7712 20 7 5.1167 -4.6865 -0.8354 21 1 -0.4850 0.8401 0.0004 22 1 0.7873 -1.9930 2.0657 23 1 -0.6470 -2.3386 1.0541 24 1 0.9046 -4.2114 2.6605 25 1 -0.5301 -4.5587 1.6485 26 1 2.0053 -5.5204 1.0621 27 1 0.7683 -5.1971 -0.1918 28 1 1.9588 -4.4034 -1.8632 29 1 3.1179 -3.0607 -1.7147 30 1 2.9035 -6.9636 -1.3924 31 1 5.3971 -7.8125 -0.9804 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260227554.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:16:01 Heat of formation + Delta-G solvation = 66.976396 kcal Electronic energy + Delta-G solvation = -15170.955119 eV Core-core repulsion = 12648.798751 eV Total energy + Delta-G solvation = -2522.156368 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -44.61169 -37.99611 -34.26889 -32.54395 -31.54151 -30.60128 -28.19004 -25.67423 -24.18896 -22.78463 -21.08416 -19.66795 -19.57175 -17.44473 -17.23983 -16.33987 -15.11451 -14.81672 -14.51140 -14.01037 -13.43000 -13.07141 -12.93140 -12.22993 -11.84915 -11.44441 -11.17150 -11.04553 -10.75911 -10.64771 -10.48897 -10.14972 -9.81783 -9.69381 -9.58627 -9.34114 -8.95019 -8.41747 -7.45968 -6.01668 -4.02556 1.78259 2.57375 3.36092 3.39253 3.44150 3.53449 4.44092 4.56799 4.81804 5.16197 5.31201 5.39708 5.52109 5.65995 5.75052 5.80031 6.00183 6.08697 6.21000 6.29783 6.45512 6.53411 6.64902 7.02193 7.11245 7.33170 7.54827 7.83442 8.02917 8.14516 8.49652 8.65499 9.03074 9.61482 11.08220 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.031498 B = 0.008472 C = 0.007044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.739930 B = 3304.369612 C = 3974.139697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.060 3.940 3 Si 0.897 3.103 4 H -0.288 1.288 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.501 4.501 8 H 0.063 0.937 9 C 0.203 3.797 10 H 0.011 0.989 11 C -0.094 4.094 12 C -0.130 4.130 13 C 0.033 3.967 14 N -0.501 5.501 15 C 0.124 3.876 16 C 0.039 3.961 17 C -0.231 4.231 18 C -0.076 4.076 19 O 0.094 5.906 20 N -0.349 5.349 21 H 0.261 0.739 22 H 0.059 0.941 23 H 0.061 0.939 24 H 0.056 0.944 25 H 0.051 0.949 26 H 0.060 0.940 27 H 0.030 0.970 28 H 0.047 0.953 29 H 0.096 0.904 30 H 0.165 0.835 31 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.015 -12.795 -1.697 13.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.141 4.141 3 Si 0.724 3.276 4 H -0.214 1.214 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.539 4.539 8 H 0.081 0.919 9 C 0.098 3.902 10 H 0.029 0.971 11 C -0.133 4.133 12 C -0.168 4.168 13 C -0.095 4.095 14 N -0.226 5.226 15 C -0.006 4.006 16 C -0.121 4.121 17 C -0.253 4.253 18 C -0.158 4.158 19 O 0.027 5.973 20 N -0.053 5.053 21 H 0.070 0.930 22 H 0.078 0.922 23 H 0.079 0.921 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.048 0.952 28 H 0.065 0.935 29 H 0.114 0.886 30 H 0.183 0.817 31 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 4.996 -11.391 -1.164 12.493 hybrid contribution -0.956 -0.089 -0.669 1.170 sum 4.041 -11.480 -1.833 12.308 Atomic orbital electron populations 1.69963 1.05868 1.26728 1.50786 1.24932 0.94877 0.99095 0.95226 0.86580 0.79460 0.82760 0.78751 1.21395 1.20192 1.20298 1.20995 0.93422 0.89274 1.50249 0.91864 1.20220 0.88591 0.87921 0.93515 0.97146 1.22199 1.00297 0.91532 0.99274 1.22395 0.97547 0.98779 0.98085 1.23054 0.94703 0.94626 0.97118 1.65430 1.32557 1.04595 1.20027 1.20425 0.91352 0.95955 0.92820 1.23781 0.93427 0.94068 1.00849 1.22743 0.98885 0.94627 1.09052 1.25894 0.91527 0.94422 1.03937 1.84863 1.35872 1.10754 1.65817 1.73890 1.06329 1.07136 1.17926 0.92963 0.92208 0.92076 0.92562 0.93033 0.92189 0.95210 0.93460 0.88571 0.81739 0.77313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.64 12.35 55.43 0.68 -24.95 16 2 C 0.06 1.69 5.33 -17.82 -0.09 1.59 16 3 Si 0.90 21.86 29.54 -169.99 -5.02 16.83 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.50 -14.06 8.34 -34.44 -0.29 -14.35 16 8 H 0.06 1.83 7.81 -52.49 -0.41 1.42 16 9 C 0.20 5.15 2.21 -67.22 -0.15 5.00 16 10 H 0.01 0.29 8.00 -51.93 -0.42 -0.12 16 11 C -0.09 -2.24 5.57 -25.34 -0.14 -2.38 16 12 C -0.13 -2.51 7.00 -25.34 -0.18 -2.69 16 13 C 0.03 0.63 6.12 -2.16 -0.01 0.62 16 14 N -0.50 -11.12 5.00 -224.90 -1.12 -12.24 16 15 C 0.12 2.46 5.37 -4.98 -0.03 2.44 16 16 C 0.04 0.69 6.50 -82.10 -0.53 0.16 16 17 C -0.23 -3.11 11.12 -39.38 -0.44 -3.55 16 18 C -0.08 -0.87 12.30 29.74 0.37 -0.50 16 19 O 0.09 1.43 11.20 17.17 0.19 1.63 16 20 N -0.35 -6.57 12.07 33.42 0.40 -6.16 16 21 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 22 H 0.06 1.53 7.85 -51.93 -0.41 1.13 16 23 H 0.06 1.51 7.94 -51.93 -0.41 1.10 16 24 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 25 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 27 H 0.03 0.52 7.75 -51.93 -0.40 0.12 16 28 H 0.05 0.85 7.77 -51.92 -0.40 0.45 16 29 H 0.10 2.09 7.78 -51.93 -0.40 1.69 16 30 H 0.17 1.78 8.06 -52.49 -0.42 1.36 16 31 H 0.21 1.28 8.06 -52.48 -0.42 0.86 16 LS Contribution 265.08 15.07 3.99 3.99 Total: -1.00 -30.74 265.08 -6.47 -37.21 By element: Atomic # 1 Polarization: 1.47 SS G_CDS: -4.10 Total: -2.63 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: -1.49 Total: -13.67 kcal Atomic # 7 Polarization: -43.33 SS G_CDS: -0.04 Total: -43.36 kcal Atomic # 8 Polarization: 1.43 SS G_CDS: 0.19 Total: 1.63 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -30.74 -6.47 -37.21 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260227554.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.185 kcal (2) G-P(sol) polarization free energy of solvation -30.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds