Wall clock time and date at job start Thu Apr 9 2020 14:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99967 * 2 1 4 4 H 1.48499 * 109.47398 * 270.00444 * 3 2 1 5 5 H 1.48497 * 109.47069 * 30.00403 * 3 2 1 6 6 H 1.48502 * 109.46988 * 150.00394 * 3 2 1 7 7 C 1.37880 * 119.99960 * 180.02562 * 2 1 3 8 8 H 1.07988 * 119.99983 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99533 * 179.97438 * 7 2 1 10 10 C 1.50698 * 109.46723 * 179.97438 * 9 7 2 11 11 C 1.34676 * 126.59118 * 84.97637 * 10 9 7 12 12 N 1.34129 * 108.02130 * 180.02562 * 11 10 9 13 13 C 1.30497 * 109.25405 * 0.02562 * 12 11 10 14 14 C 1.50701 * 125.64533 * 179.97438 * 13 12 11 15 15 H 1.08999 * 110.99233 * 337.76910 * 14 13 12 16 16 C 1.55457 * 111.18348 * 101.92334 * 14 13 12 17 17 C 1.54382 * 102.18540 * 152.00761 * 16 14 13 18 18 O 1.43233 * 107.66464 * 338.74226 * 17 16 14 19 19 C 1.43650 * 109.97542 * 358.24175 * 18 17 16 20 20 N 1.35044 * 108.70490 * 0.26000 * 13 12 11 21 21 H 0.96992 * 126.39426 * 179.73576 * 20 13 12 22 22 H 0.97002 * 120.00306 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.46832 * 60.00348 * 9 7 2 24 24 H 1.08997 * 109.47862 * 299.99939 * 9 7 2 25 25 H 1.08004 * 125.98629 * 0.04671 * 11 10 9 26 26 H 1.08994 * 110.83103 * 33.85826 * 16 14 13 27 27 H 1.08999 * 110.92148 * 270.19704 * 16 14 13 28 28 H 1.09002 * 109.83024 * 219.18066 * 17 16 14 29 29 H 1.08996 * 109.83002 * 98.29659 * 17 16 14 30 30 H 1.08996 * 110.30866 * 143.34644 * 19 18 17 31 31 H 1.09000 * 110.30998 * 265.51637 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0139 -2.6148 -0.0010 11 6 4.1918 -3.4035 -1.0781 12 7 4.6505 -4.5898 -0.6524 13 6 4.7631 -4.5664 0.6475 14 6 5.2451 -5.7059 1.5079 15 1 5.1243 -6.6603 0.9955 16 6 6.7202 -5.4916 1.9493 17 6 6.7736 -6.2559 3.2896 18 8 5.4317 -6.3743 3.7761 19 6 4.5245 -5.7135 2.8796 20 7 4.3702 -3.3542 1.0945 21 1 4.3474 -3.0613 2.0188 22 1 -0.4851 0.8400 0.0004 23 1 3.8751 -0.6804 0.8889 24 1 3.8746 -0.6800 -0.8911 25 1 3.9992 -3.1286 -2.1046 26 1 6.9303 -4.4325 2.0980 27 1 7.4100 -5.9274 1.2265 28 1 7.3796 -5.7024 4.0069 29 1 7.1990 -7.2472 3.1333 30 1 3.5884 -6.2677 2.8122 31 1 4.3377 -4.6931 3.2145 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260231293.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:16:06 Heat of formation + Delta-G solvation = -22.167139 kcal Electronic energy + Delta-G solvation = -14752.279236 eV Core-core repulsion = 12226.257315 eV Total energy + Delta-G solvation = -2526.021921 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.08528 -40.20838 -35.53032 -34.08297 -33.57417 -32.19589 -30.45883 -28.23576 -24.99718 -23.55054 -23.00517 -21.74316 -21.20084 -19.03003 -18.48089 -17.59439 -16.69617 -16.33893 -15.89327 -15.72795 -15.04819 -14.75646 -14.55255 -14.45597 -13.94608 -13.71662 -13.08621 -12.77628 -12.54489 -12.44868 -12.32877 -11.97785 -11.88077 -11.67298 -10.96651 -10.90657 -10.79776 -10.56390 -9.06500 -8.31906 -6.39528 1.14916 1.39163 1.39891 1.50787 2.11566 2.18969 2.33924 2.80554 3.02702 3.24370 3.57944 3.84010 4.04935 4.12663 4.22868 4.26522 4.46821 4.64795 4.67370 4.74231 4.84814 4.90132 4.95522 4.96279 5.13865 5.47116 5.54268 5.81677 5.91183 6.19899 6.53697 6.67705 7.12116 7.24628 8.84567 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.043911 B = 0.006217 C = 0.006031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.503373 B = 4503.009705 C = 4641.686647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.011 3.989 3 Si 0.954 3.046 4 H -0.264 1.264 5 H -0.285 1.285 6 H -0.241 1.241 7 C -0.527 4.527 8 H 0.024 0.976 9 C 0.058 3.942 10 C 0.024 3.976 11 C -0.063 4.063 12 N -0.511 5.511 13 C 0.201 3.799 14 C -0.030 4.030 15 H 0.120 0.880 16 C -0.139 4.139 17 C 0.049 3.951 18 O -0.396 6.396 19 C 0.058 3.942 20 N -0.557 5.557 21 H 0.424 0.576 22 H 0.269 0.731 23 H 0.039 0.961 24 H 0.051 0.949 25 H 0.168 0.832 26 H 0.075 0.925 27 H 0.104 0.896 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.079 -7.965 6.202 18.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.187 4.187 3 Si 0.776 3.224 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.164 1.164 7 C -0.565 4.565 8 H 0.042 0.958 9 C 0.020 3.980 10 C -0.092 4.092 11 C -0.209 4.209 12 N -0.231 5.231 13 C -0.062 4.062 14 C -0.050 4.050 15 H 0.138 0.862 16 C -0.177 4.177 17 C -0.027 4.027 18 O -0.316 6.316 19 C -0.019 4.019 20 N -0.162 5.162 21 H 0.264 0.736 22 H 0.078 0.922 23 H 0.057 0.943 24 H 0.070 0.930 25 H 0.185 0.815 26 H 0.093 0.907 27 H 0.122 0.878 28 H 0.102 0.898 29 H 0.109 0.891 30 H 0.114 0.886 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 15.061 -8.644 5.823 18.315 hybrid contribution -0.690 1.715 0.394 1.890 sum 14.371 -6.928 6.216 17.122 Atomic orbital electron populations 1.70059 1.08500 1.28462 1.51723 1.25985 0.95585 1.03473 0.93652 0.85612 0.79490 0.77750 0.79516 1.18870 1.21059 1.16408 1.21105 0.90670 0.92994 1.51709 0.95775 1.18124 0.94028 0.87073 0.98823 1.21579 1.03471 0.97159 0.87010 1.22116 1.08707 0.90567 0.99466 1.70061 1.20296 1.23306 1.09419 1.22921 1.04704 0.87721 0.90862 1.21286 0.96079 0.94358 0.93324 0.86171 1.23216 0.94663 1.02044 0.97823 1.23336 0.83606 1.01494 0.94272 1.88413 1.17532 1.77224 1.48397 1.23396 0.93904 0.97991 0.86605 1.43018 1.50958 1.12290 1.09898 0.73605 0.92232 0.94308 0.93049 0.81484 0.90666 0.87755 0.89801 0.89087 0.88576 0.92331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.16 13.96 21.45 0.30 -57.86 16 2 C 0.01 0.60 5.47 84.66 0.46 1.06 16 3 Si 0.95 41.65 27.47 68.60 1.88 43.54 16 4 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 5 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 6 H -0.24 -9.46 6.54 99.48 0.65 -8.80 16 7 C -0.53 -29.52 9.65 25.60 0.25 -29.27 16 8 H 0.02 1.54 7.98 -2.92 -0.02 1.52 16 9 C 0.06 2.60 4.60 29.10 0.13 2.73 16 10 C 0.02 1.01 6.43 40.95 0.26 1.27 16 11 C -0.06 -2.59 11.79 83.52 0.98 -1.61 16 12 N -0.51 -19.79 11.25 -188.12 -2.12 -21.91 16 13 C 0.20 6.55 7.00 138.13 0.97 7.51 16 14 C -0.03 -0.71 3.63 -10.03 -0.04 -0.74 16 15 H 0.12 2.71 8.14 -2.39 -0.02 2.69 16 16 C -0.14 -2.48 6.51 31.91 0.21 -2.27 16 17 C 0.05 0.78 7.79 72.45 0.56 1.35 16 18 O -0.40 -8.86 11.36 -148.98 -1.69 -10.55 16 19 C 0.06 1.31 7.23 72.65 0.53 1.84 16 20 N -0.56 -18.94 5.90 -174.60 -1.03 -19.97 16 21 H 0.42 12.14 7.78 -92.71 -0.72 11.42 16 22 H 0.27 15.32 8.31 -92.71 -0.77 14.54 16 23 H 0.04 1.62 7.20 -2.39 -0.02 1.60 16 24 H 0.05 2.19 7.57 -2.39 -0.02 2.18 16 25 H 0.17 6.58 8.06 -2.91 -0.02 6.56 16 26 H 0.07 1.39 8.03 -2.39 -0.02 1.38 16 27 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.06 1.31 6.70 -2.39 -0.02 1.29 16 Total: -1.00 -68.63 263.13 2.02 -66.60 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: 0.36 Total: 18.28 kcal Atomic # 6 Polarization: -22.45 SS G_CDS: 4.32 Total: -18.13 kcal Atomic # 7 Polarization: -96.89 SS G_CDS: -2.85 Total: -99.74 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: -1.69 Total: -10.55 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 1.88 Total: 43.54 kcal Total: -68.63 2.02 -66.60 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260231293.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.436 kcal (2) G-P(sol) polarization free energy of solvation -68.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds