Wall clock time and date at job start Thu Apr 9 2020 14:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 114.00213 * 2 1 4 4 C 1.52996 * 109.47492 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.47172 * 54.99617 * 4 3 2 6 6 C 1.50699 * 109.47009 * 295.00198 * 4 3 2 7 7 H 1.08008 * 120.00140 * 334.69210 * 6 4 3 8 8 C 1.37873 * 120.00206 * 154.69665 * 6 4 3 9 9 N 1.31520 * 120.00286 * 184.85273 * 8 6 4 10 10 Si 1.86804 * 120.00040 * 4.84923 * 8 6 4 11 11 H 1.48500 * 109.47138 * 84.63382 * 10 8 6 12 12 H 1.48496 * 109.47246 * 204.63684 * 10 8 6 13 13 H 1.48496 * 109.47012 * 324.63525 * 10 8 6 14 14 C 1.50700 * 109.47598 * 175.00141 * 4 3 2 15 15 C 1.38286 * 119.96925 * 55.54073 * 14 4 3 16 16 C 1.38250 * 120.10719 * 179.97438 * 15 14 4 17 17 C 1.38163 * 120.05956 * 0.02562 * 16 15 14 18 18 C 1.38713 * 119.94147 * 0.02562 * 17 16 15 19 19 O 1.35896 * 120.05628 * 179.97438 * 18 17 16 20 20 C 1.38117 * 119.97385 * 235.57044 * 14 4 3 21 21 H 1.08995 * 109.47331 * 59.99592 * 1 2 3 22 22 H 1.08995 * 109.47211 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.46978 * 299.99442 * 1 2 3 24 24 H 1.09008 * 109.46990 * 60.00303 * 3 2 1 25 25 H 1.09007 * 109.47076 * 300.00366 * 3 2 1 26 26 H 0.96995 * 120.00002 * 180.02562 * 9 8 6 27 27 H 1.07998 * 119.94554 * 359.72838 * 15 14 4 28 28 H 1.08001 * 119.96588 * 179.97438 * 16 15 14 29 29 H 1.07998 * 120.02988 * 179.97438 * 17 16 15 30 30 H 0.96697 * 114.00196 * 270.02714 * 19 18 17 31 31 H 1.08007 * 120.02893 * 0.02562 * 20 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.8507 0.5685 -0.8426 6 6 3.9893 0.5461 1.2867 7 1 3.3766 0.6227 2.1729 8 6 5.1867 -0.1357 1.3334 9 7 5.5381 -0.7735 2.4286 10 14 6.3102 -0.1536 -0.1589 11 1 7.1584 1.0653 -0.1547 12 1 7.1758 -1.3593 -0.1125 13 1 5.4893 -0.1810 -1.3961 14 6 4.1480 2.5560 -0.1244 15 6 3.8167 3.5450 0.7834 16 6 4.3773 4.8039 0.6729 17 6 5.2699 5.0769 -0.3458 18 6 5.6030 4.0868 -1.2583 19 8 6.4803 4.3529 -2.2614 20 6 5.0393 2.8240 -1.1449 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 1.6886 1.8463 0.8901 25 1 1.6886 1.8464 -0.8900 26 1 6.3807 -1.2529 2.4616 27 1 3.1158 3.3349 1.5778 28 1 4.1166 5.5748 1.3829 29 1 5.7073 6.0606 -0.4319 30 1 6.0651 4.6829 -3.0700 31 1 5.2971 2.0514 -1.8543 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260251375.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:16:16 Heat of formation + Delta-G solvation = -91.031354 kcal Electronic energy + Delta-G solvation = -15109.718432 eV Core-core repulsion = 12548.417583 eV Total energy + Delta-G solvation = -2561.300849 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.104 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.73374 -38.88470 -37.68791 -35.39498 -33.52439 -31.05024 -29.71163 -27.75903 -26.29983 -23.96127 -23.41276 -21.50922 -19.39109 -18.52547 -17.53998 -17.12030 -16.65212 -16.43249 -16.18102 -15.96067 -15.36510 -14.78963 -14.65005 -14.02201 -13.70454 -13.37527 -13.10419 -12.88210 -12.68293 -12.40177 -12.23400 -11.86811 -11.68290 -11.30103 -11.22423 -10.76302 -10.39408 -9.66266 -9.35978 -8.31226 -6.31308 0.41663 0.51747 1.27881 1.33326 1.36173 2.30229 2.80120 2.94299 3.22060 3.37663 4.02752 4.18346 4.24879 4.35821 4.44033 4.56843 4.60498 4.64769 4.68981 4.83303 4.87402 5.02816 5.17757 5.20502 5.52654 5.55400 5.60462 5.86458 6.04833 6.26211 6.50282 6.73098 6.91014 7.30830 8.85033 Molecular weight = 222.10amu Principal moments of inertia in cm(-1) A = 0.019758 B = 0.012633 C = 0.009414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.804089 B = 2215.805231 C = 2973.736417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.412 6.412 3 C 0.093 3.907 4 C 0.034 3.966 5 H 0.041 0.959 6 C -0.481 4.481 7 H 0.041 0.959 8 C 0.020 3.980 9 N -0.945 5.945 10 Si 0.921 3.079 11 H -0.270 1.270 12 H -0.291 1.291 13 H -0.245 1.245 14 C -0.044 4.044 15 C -0.130 4.130 16 C -0.097 4.097 17 C -0.163 4.163 18 C 0.100 3.900 19 O -0.510 6.510 20 C -0.184 4.184 21 H 0.054 0.946 22 H 0.092 0.908 23 H 0.043 0.957 24 H 0.045 0.955 25 H 0.053 0.947 26 H 0.264 0.736 27 H 0.121 0.879 28 H 0.155 0.845 29 H 0.152 0.848 30 H 0.408 0.592 31 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.709 11.375 -9.028 15.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.331 6.331 3 C 0.017 3.983 4 C 0.015 3.985 5 H 0.059 0.941 6 C -0.519 4.519 7 H 0.059 0.941 8 C -0.177 4.177 9 N -0.585 5.585 10 Si 0.747 3.253 11 H -0.195 1.195 12 H -0.217 1.217 13 H -0.169 1.169 14 C -0.045 4.045 15 C -0.148 4.148 16 C -0.115 4.115 17 C -0.181 4.181 18 C 0.055 3.945 19 O -0.323 6.323 20 C -0.202 4.202 21 H 0.073 0.927 22 H 0.111 0.889 23 H 0.061 0.939 24 H 0.063 0.937 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.139 0.861 28 H 0.173 0.827 29 H 0.169 0.831 30 H 0.267 0.733 31 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -5.055 10.910 -8.558 14.759 hybrid contribution 0.308 -0.290 -0.519 0.670 sum -4.747 10.620 -9.077 14.755 Atomic orbital electron populations 1.22903 0.80314 1.03409 1.00536 1.87967 1.20786 1.28992 1.95371 1.22359 0.93086 0.83750 0.99137 1.18340 0.92676 0.90542 0.96979 0.94101 1.20930 1.04222 1.31151 0.95558 0.94095 1.25702 0.99257 0.94601 0.98162 1.70018 1.23802 1.35038 1.29655 0.86191 0.79645 0.77538 0.81902 1.19535 1.21730 1.16883 1.20258 0.95578 0.95589 0.93046 1.21121 1.01748 0.93262 0.98665 1.21332 0.95743 0.96635 0.97773 1.21529 0.99974 0.99871 0.96765 1.18511 0.91558 0.92449 0.91942 1.84760 1.34238 1.87651 1.25605 1.21400 1.00231 0.97688 1.00908 0.92719 0.88950 0.93873 0.93715 0.92864 0.92690 0.86124 0.82702 0.83077 0.73346 0.87246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.72 11.01 113.37 1.25 1.97 16 2 O -0.41 -17.38 10.46 -148.98 -1.56 -18.94 16 3 C 0.09 3.73 4.98 71.98 0.36 4.09 16 4 C 0.03 1.58 1.82 -12.29 -0.02 1.56 16 5 H 0.04 2.02 5.45 -2.39 -0.01 2.00 16 6 C -0.48 -27.62 8.38 25.60 0.21 -27.41 16 7 H 0.04 2.58 8.05 -2.91 -0.02 2.56 16 8 C 0.02 1.21 5.47 84.65 0.46 1.68 16 9 N -0.94 -60.57 13.96 21.45 0.30 -60.27 16 10 Si 0.92 46.95 24.77 68.60 1.70 48.65 16 11 H -0.27 -13.72 7.11 99.48 0.71 -13.01 16 12 H -0.29 -14.67 7.11 99.48 0.71 -13.96 16 13 H -0.24 -11.58 5.95 99.48 0.59 -10.99 16 14 C -0.04 -1.84 4.30 -19.88 -0.09 -1.93 16 15 C -0.13 -4.81 8.94 22.28 0.20 -4.61 16 16 C -0.10 -2.90 10.04 22.25 0.22 -2.67 16 17 C -0.16 -4.76 9.99 22.37 0.22 -4.53 16 18 C 0.10 3.34 6.70 22.51 0.15 3.49 16 19 O -0.51 -14.56 13.50 -92.38 -1.25 -15.81 16 20 C -0.18 -7.25 8.09 22.36 0.18 -7.07 16 21 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 22 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 23 H 0.04 1.17 8.14 -2.38 -0.02 1.15 16 24 H 0.04 1.73 7.34 -2.38 -0.02 1.72 16 25 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 26 H 0.26 16.00 8.31 -92.71 -0.77 15.23 16 27 H 0.12 4.42 7.37 -2.91 -0.02 4.40 16 28 H 0.16 3.45 8.06 -2.91 -0.02 3.43 16 29 H 0.15 3.39 8.06 -2.91 -0.02 3.37 16 30 H 0.41 6.77 9.06 -74.06 -0.67 6.10 16 31 H 0.11 4.39 6.77 -2.91 -0.02 4.37 16 Total: -1.00 -72.68 263.59 2.69 -69.98 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: 0.34 Total: 11.82 kcal Atomic # 6 Polarization: -38.58 SS G_CDS: 3.15 Total: -35.43 kcal Atomic # 7 Polarization: -60.57 SS G_CDS: 0.30 Total: -60.27 kcal Atomic # 8 Polarization: -31.94 SS G_CDS: -2.81 Total: -34.75 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 1.70 Total: 48.65 kcal Total: -72.68 2.69 -69.98 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260251375.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.046 kcal (2) G-P(sol) polarization free energy of solvation -72.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds