Wall clock time and date at job start Thu Apr 9 2020 14:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42896 * 114.00055 * 2 1 4 4 C 1.52991 * 109.47369 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.47392 * 305.00036 * 4 3 2 6 6 C 1.50703 * 109.47329 * 64.99826 * 4 3 2 7 7 H 1.07999 * 120.00244 * 234.79274 * 6 4 3 8 8 C 1.37874 * 119.99576 * 55.06640 * 6 4 3 9 9 N 1.31516 * 120.00255 * 5.78494 * 8 6 4 10 10 Si 1.86806 * 119.99996 * 185.78400 * 8 6 4 11 11 H 1.48497 * 109.46959 * 60.00054 * 10 8 6 12 12 H 1.48505 * 109.47081 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.46919 * 299.99712 * 10 8 6 14 14 C 1.50704 * 109.47400 * 185.00284 * 4 3 2 15 15 C 1.38286 * 119.97350 * 150.66598 * 14 4 3 16 16 C 1.38239 * 120.11064 * 179.72798 * 15 14 4 17 17 C 1.38170 * 120.05567 * 0.53779 * 16 15 14 18 18 C 1.38711 * 119.94053 * 359.73140 * 17 16 15 19 19 O 1.35901 * 120.05118 * 179.97438 * 18 17 16 20 20 C 1.38121 * 119.96788 * 330.93097 * 14 4 3 21 21 H 1.09002 * 109.46976 * 60.00397 * 1 2 3 22 22 H 1.08997 * 109.47128 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47215 * 299.99986 * 1 2 3 24 24 H 1.09001 * 109.47078 * 59.99900 * 3 2 1 25 25 H 1.09006 * 109.47272 * 300.00407 * 3 2 1 26 26 H 0.97002 * 120.00071 * 180.02562 * 9 8 6 27 27 H 1.08006 * 119.94482 * 359.96911 * 15 14 4 28 28 H 1.08005 * 119.97552 * 180.24912 * 16 15 14 29 29 H 1.07996 * 120.02938 * 179.71029 * 17 16 15 30 30 H 0.96702 * 114.00002 * 270.01986 * 19 18 17 31 31 H 1.07995 * 120.03129 * 0.02562 * 20 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.8515 0.5682 0.8409 6 6 3.9883 0.5466 -1.2886 7 1 4.6089 -0.3369 -1.2646 8 6 3.6150 1.0942 -2.4977 9 7 2.9608 2.2347 -2.5291 10 14 4.0384 0.2161 -4.0912 11 1 3.4097 -1.1292 -4.0972 12 1 3.5302 1.0058 -5.2416 13 1 5.5125 0.0742 -4.2015 14 6 4.1480 2.5560 0.1233 15 6 5.3792 2.7101 0.7338 16 6 5.9463 3.9659 0.8440 17 6 5.2789 5.0721 0.3540 18 6 4.0413 4.9208 -0.2539 19 8 3.3827 6.0073 -0.7363 20 6 3.4768 3.6585 -0.3683 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 1.6886 1.8463 0.8900 25 1 1.6886 1.8464 -0.8900 26 1 2.6979 2.6197 -3.3797 27 1 5.9003 1.8473 1.1218 28 1 6.9098 4.0833 1.3177 29 1 5.7202 6.0536 0.4444 30 1 2.7952 6.4283 -0.0939 31 1 2.5132 3.5382 -0.8408 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260251381.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:16:18 Heat of formation + Delta-G solvation = -62.536773 kcal Electronic energy + Delta-G solvation = -15364.915973 eV Core-core repulsion = 12804.850742 eV Total energy + Delta-G solvation = -2560.065231 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.104 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.89249 -37.00414 -35.90879 -33.67577 -30.89435 -28.93279 -27.93132 -25.92750 -24.46494 -22.33595 -21.28363 -19.81653 -17.38106 -16.16089 -15.69674 -15.25103 -14.91471 -14.46205 -14.32070 -14.21768 -13.63850 -12.86383 -12.58231 -12.07793 -11.58728 -11.40028 -11.20139 -10.89294 -10.77506 -10.62032 -10.53900 -10.40853 -9.68858 -9.35775 -9.12528 -8.70820 -8.31464 -7.69313 -7.52460 -5.97390 -4.12077 2.24895 2.45278 3.32932 3.36964 3.40555 4.41469 4.68780 4.88129 5.02287 5.25279 5.74884 5.87531 5.93151 6.04316 6.19658 6.21404 6.42273 6.48329 6.61465 6.66706 6.93870 7.05026 7.12189 7.35277 7.39773 7.53889 7.80037 7.86762 8.00647 8.19901 8.40809 8.46768 8.83414 9.52712 10.95525 Molecular weight = 222.10amu Principal moments of inertia in cm(-1) A = 0.021293 B = 0.011905 C = 0.009870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.669827 B = 2351.350087 C = 2836.234952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.381 6.381 3 C 0.062 3.938 4 C 0.074 3.926 5 H 0.039 0.961 6 C -0.492 4.492 7 H 0.060 0.940 8 C 0.066 3.934 9 N -0.882 5.882 10 Si 0.896 3.104 11 H -0.276 1.276 12 H -0.287 1.287 13 H -0.278 1.278 14 C -0.013 4.013 15 C -0.137 4.137 16 C -0.126 4.126 17 C -0.176 4.176 18 C 0.074 3.926 19 O -0.503 6.503 20 C -0.088 4.088 21 H 0.032 0.968 22 H 0.070 0.930 23 H 0.024 0.976 24 H 0.005 0.995 25 H 0.090 0.910 26 H 0.263 0.737 27 H 0.110 0.890 28 H 0.108 0.892 29 H 0.107 0.893 30 H 0.373 0.627 31 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.702 3.133 5.602 6.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.299 6.299 3 C -0.014 4.014 4 C 0.056 3.944 5 H 0.057 0.943 6 C -0.529 4.529 7 H 0.078 0.922 8 C -0.135 4.135 9 N -0.520 5.520 10 Si 0.724 3.276 11 H -0.201 1.201 12 H -0.213 1.213 13 H -0.204 1.204 14 C -0.014 4.014 15 C -0.155 4.155 16 C -0.145 4.145 17 C -0.195 4.195 18 C 0.030 3.970 19 O -0.311 6.311 20 C -0.107 4.107 21 H 0.050 0.950 22 H 0.088 0.912 23 H 0.043 0.957 24 H 0.023 0.977 25 H 0.108 0.892 26 H 0.074 0.926 27 H 0.128 0.872 28 H 0.126 0.874 29 H 0.125 0.875 30 H 0.226 0.774 31 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -1.351 2.952 4.919 5.894 hybrid contribution -0.123 0.065 -0.678 0.692 sum -1.473 3.016 4.241 5.409 Atomic orbital electron populations 1.22528 0.83956 1.00891 0.98746 1.87879 1.16906 1.29974 1.95170 1.22903 0.96369 0.82927 0.99229 1.17791 0.90127 0.89430 0.97100 0.94268 1.20887 1.31714 1.10777 0.89494 0.92205 1.24932 0.94962 0.94458 0.99177 1.69692 1.39512 1.16903 1.25927 0.86586 0.78689 0.79781 0.82586 1.20127 1.21304 1.20350 1.20111 0.93582 0.95844 0.91888 1.20921 0.96287 0.96330 1.01935 1.20686 0.99185 0.92769 1.01811 1.21043 0.96802 0.98459 1.03148 1.18617 0.92660 0.86780 0.98922 1.84855 1.61589 1.43396 1.41233 1.21673 1.02840 0.90008 0.96159 0.94961 0.91158 0.95699 0.97698 0.89225 0.92616 0.87164 0.87377 0.87486 0.77397 0.83430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.65 11.01 101.05 1.11 1.76 16 2 O -0.38 -8.81 10.46 -35.23 -0.37 -9.18 16 3 C 0.06 1.45 4.25 37.15 0.16 1.61 16 4 C 0.07 1.83 2.55 -92.93 -0.24 1.60 16 5 H 0.04 0.94 8.09 -51.93 -0.42 0.52 16 6 C -0.49 -13.30 8.46 -34.44 -0.29 -13.59 16 7 H 0.06 1.63 7.82 -52.49 -0.41 1.21 16 8 C 0.07 1.78 5.11 -17.82 -0.09 1.69 16 9 N -0.88 -23.73 7.92 55.43 0.44 -23.29 16 10 Si 0.90 21.45 29.54 -169.99 -5.02 16.42 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 14 C -0.01 -0.31 4.68 -104.65 -0.49 -0.80 16 15 C -0.14 -2.87 9.70 -39.56 -0.38 -3.26 16 16 C -0.13 -2.39 10.04 -39.61 -0.40 -2.79 16 17 C -0.18 -3.39 9.99 -39.43 -0.39 -3.78 16 18 C 0.07 1.55 6.70 -39.22 -0.26 1.29 16 19 O -0.50 -9.45 13.50 -19.43 -0.26 -9.71 16 20 C -0.09 -2.03 7.33 -39.43 -0.29 -2.32 16 21 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 23 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.00 0.11 8.14 -51.93 -0.42 -0.32 16 25 H 0.09 2.26 4.77 -51.93 -0.25 2.02 16 26 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 27 H 0.11 2.14 8.06 -52.48 -0.42 1.72 16 28 H 0.11 1.70 8.06 -52.48 -0.42 1.28 16 29 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 30 H 0.37 4.87 9.06 45.56 0.41 5.28 16 31 H 0.15 3.60 5.12 -52.49 -0.27 3.33 16 LS Contribution 262.50 15.07 3.96 3.96 Total: -1.00 -29.60 262.50 -5.85 -35.45 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -3.03 Total: 4.95 kcal Atomic # 6 Polarization: -17.03 SS G_CDS: -1.57 Total: -18.59 kcal Atomic # 7 Polarization: -23.73 SS G_CDS: 0.44 Total: -23.29 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: -0.63 Total: -18.90 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -29.60 -5.85 -35.45 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260251381.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.085 kcal (2) G-P(sol) polarization free energy of solvation -29.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds