Wall clock time and date at job start Thu Apr 9 2020 14:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30848 * 1 3 3 Si 1.86805 * 119.99775 * 2 1 4 4 H 1.48499 * 109.47120 * 270.00242 * 3 2 1 5 5 H 1.48500 * 109.46912 * 30.00163 * 3 2 1 6 6 H 1.48502 * 109.47062 * 150.00088 * 3 2 1 7 7 C 1.40072 * 120.00598 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00426 * 179.97438 * 7 2 1 9 9 C 1.40062 * 119.99685 * 359.97438 * 7 2 1 10 10 C 1.39622 * 127.05987 * 359.95753 * 9 7 2 11 11 N 1.33024 * 107.46211 * 180.02562 * 10 9 7 12 12 C 1.31005 * 109.98161 * 359.97438 * 11 10 9 13 13 C 1.50701 * 125.18082 * 180.02562 * 12 11 10 14 14 C 1.53174 * 109.54402 * 214.53409 * 13 12 11 15 15 C 1.53096 * 109.16347 * 183.15110 * 14 13 12 16 16 O 1.42899 * 109.41710 * 57.60428 * 15 14 13 17 17 C 1.42911 * 114.09525 * 298.84600 * 16 15 14 18 18 C 1.53091 * 109.41814 * 61.15735 * 17 16 15 19 19 N 1.35074 * 109.64486 * 0.02562 * 12 11 10 20 20 H 0.97005 * 126.48120 * 179.73936 * 19 12 11 21 21 H 0.96995 * 120.00436 * 359.97438 * 1 2 3 22 22 H 1.08004 * 126.26965 * 0.05731 * 10 9 7 23 23 H 1.09009 * 109.54034 * 334.79461 * 13 12 11 24 24 H 1.09003 * 109.52159 * 303.05066 * 14 13 12 25 25 H 1.08993 * 109.52774 * 63.24231 * 14 13 12 26 26 H 1.09002 * 109.47872 * 297.62111 * 15 14 13 27 27 H 1.08997 * 109.48062 * 177.59122 * 15 14 13 28 28 H 1.09002 * 109.48039 * 301.16945 * 17 16 15 29 29 H 1.09008 * 109.47559 * 181.14075 * 17 16 15 30 30 H 1.08997 * 109.52540 * 182.48389 * 18 17 16 31 31 H 1.09002 * 109.52288 * 62.29205 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 2.4899 2.0465 -1.4001 5 1 1.4398 2.6527 0.7001 6 1 3.5400 1.4403 0.7000 7 6 2.0090 -1.2130 -0.0005 8 1 3.0889 -1.2130 -0.0010 9 6 1.3087 -2.4260 -0.0005 10 6 -0.0769 -2.5977 0.0008 11 7 -0.3170 -3.9060 0.0008 12 6 0.8131 -4.5686 -0.0009 13 6 0.9392 -6.0703 -0.0020 14 6 2.1680 -6.4820 0.8146 15 6 2.3330 -8.0023 0.7426 16 8 2.4511 -8.4032 -0.6239 17 6 1.3110 -8.0865 -1.4254 18 6 1.1050 -6.5696 -1.4406 19 7 1.8483 -3.7008 -0.0016 20 1 2.7913 -3.9280 0.0007 21 1 -0.4850 0.8400 0.0004 22 1 -0.8181 -1.8121 0.0011 23 1 0.0440 -6.5117 0.4363 24 1 3.0557 -5.9995 0.4053 25 1 2.0337 -6.1789 1.8529 26 1 1.4629 -8.4839 1.1889 27 1 3.2305 -8.2967 1.2866 28 1 0.4275 -8.5692 -1.0075 29 1 1.4724 -8.4417 -2.4433 30 1 0.2104 -6.3292 -2.0150 31 1 1.9712 -6.0889 -1.8954 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260251491.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:16:20 Heat of formation + Delta-G solvation = -17.954141 kcal Electronic energy + Delta-G solvation = -15014.459225 eV Core-core repulsion = 12488.619993 eV Total energy + Delta-G solvation = -2525.839232 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.11540 -38.74572 -34.08245 -33.20484 -31.08787 -30.69392 -28.30219 -25.82599 -23.37592 -23.29013 -20.58077 -19.47880 -18.97814 -17.52882 -16.09708 -15.85031 -15.43773 -14.62099 -14.47493 -13.95865 -13.73043 -12.87392 -12.76501 -12.34287 -12.12354 -11.86771 -11.28969 -11.19172 -11.14232 -10.85286 -10.70814 -10.45082 -10.21792 -10.05893 -9.39239 -9.35069 -8.34079 -8.21407 -6.88495 -6.62138 -4.23367 2.96193 3.08487 3.11968 3.69608 3.93268 3.98641 4.64729 4.74041 4.99674 5.13468 5.19313 5.26231 5.39616 5.46104 5.55422 5.72556 5.79621 5.97320 6.09564 6.21726 6.27117 6.47895 6.63610 7.06300 7.16045 7.29616 7.65591 7.75473 8.01398 8.52238 8.88524 9.03882 9.25952 9.99421 10.33514 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.060256 B = 0.006304 C = 0.006043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.571067 B = 4440.710661 C = 4632.288746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.072 3.928 3 Si 0.925 3.075 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.266 1.266 7 C -0.448 4.448 8 H 0.069 0.931 9 C 0.176 3.824 10 C -0.132 4.132 11 N -0.480 5.480 12 C 0.078 3.922 13 C 0.021 3.979 14 C -0.150 4.150 15 C 0.064 3.936 16 O -0.388 6.388 17 C 0.061 3.939 18 C -0.145 4.145 19 N -0.604 5.604 20 H 0.393 0.607 21 H 0.278 0.722 22 H 0.184 0.816 23 H 0.081 0.919 24 H 0.065 0.935 25 H 0.074 0.926 26 H 0.050 0.950 27 H 0.090 0.910 28 H 0.049 0.951 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.017 -9.132 -0.047 9.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.144 4.144 3 Si 0.750 3.250 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.190 1.190 7 C -0.483 4.483 8 H 0.088 0.912 9 C 0.063 3.937 10 C -0.281 4.281 11 N -0.200 5.200 12 C -0.176 4.176 13 C 0.001 3.999 14 C -0.189 4.189 15 C -0.013 4.013 16 O -0.307 6.307 17 C -0.015 4.015 18 C -0.184 4.184 19 N -0.215 5.215 20 H 0.227 0.773 21 H 0.089 0.911 22 H 0.201 0.799 23 H 0.099 0.901 24 H 0.084 0.916 25 H 0.093 0.907 26 H 0.068 0.932 27 H 0.108 0.892 28 H 0.068 0.932 29 H 0.108 0.892 30 H 0.095 0.905 31 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.078 -9.453 -0.114 9.942 hybrid contribution 1.440 1.362 0.099 1.984 sum 4.518 -8.092 -0.015 9.268 Atomic orbital electron populations 1.69610 1.07279 1.28501 1.37633 1.25642 0.94859 1.00743 0.93176 0.86045 0.79795 0.80186 0.78976 1.19624 1.20174 1.18989 1.18358 0.93768 0.88606 1.47613 0.91232 1.19061 0.93485 0.82704 0.98447 1.23390 0.94144 0.90762 1.19787 1.69403 1.26354 1.07171 1.17057 1.21660 0.83922 0.91490 1.20537 1.19106 0.97574 0.88705 0.94525 1.22239 0.99004 0.96272 1.01366 1.22565 1.01638 0.94016 0.83104 1.87881 1.40932 1.81131 1.20769 1.22629 0.88472 0.95083 0.95334 1.22267 1.02965 0.95252 0.97908 1.42856 1.07469 1.06998 1.64170 0.77267 0.91060 0.79949 0.90085 0.91601 0.90724 0.93196 0.89187 0.93241 0.89204 0.90531 0.91545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.23 10.35 55.56 0.57 -20.66 16 2 C 0.07 1.84 5.50 -17.28 -0.10 1.75 16 3 Si 0.92 18.98 29.56 -169.99 -5.03 13.95 16 4 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 5 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 6 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 7 C -0.45 -11.97 9.45 -38.21 -0.36 -12.33 16 8 H 0.07 1.75 7.85 -52.49 -0.41 1.33 16 9 C 0.18 4.83 6.96 -83.68 -0.58 4.25 16 10 C -0.13 -3.79 10.88 -16.52 -0.18 -3.97 16 11 N -0.48 -12.96 11.18 -9.76 -0.11 -13.07 16 12 C 0.08 1.81 6.85 -154.96 -1.06 0.75 16 13 C 0.02 0.38 2.75 -91.59 -0.25 0.13 16 14 C -0.15 -2.25 5.20 -26.59 -0.14 -2.39 16 15 C 0.06 0.80 6.84 37.21 0.25 1.06 16 16 O -0.39 -5.52 10.77 -35.23 -0.38 -5.90 16 17 C 0.06 0.80 6.84 37.20 0.25 1.06 16 18 C -0.15 -2.31 5.41 -26.59 -0.14 -2.45 16 19 N -0.60 -14.22 5.97 -7.86 -0.05 -14.26 16 20 H 0.39 8.00 8.01 -40.82 -0.33 7.67 16 21 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 22 H 0.18 5.46 5.78 -52.48 -0.30 5.15 16 23 H 0.08 1.44 8.14 -51.92 -0.42 1.01 16 24 H 0.07 1.00 7.24 -51.93 -0.38 0.62 16 25 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.09 1.01 8.14 -51.92 -0.42 0.59 16 30 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 258.14 15.07 3.89 3.89 Total: -1.00 -30.25 258.14 -7.34 -37.59 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -3.93 Total: 10.62 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: -2.31 Total: -12.16 kcal Atomic # 7 Polarization: -48.41 SS G_CDS: 0.42 Total: -47.99 kcal Atomic # 8 Polarization: -5.52 SS G_CDS: -0.38 Total: -5.90 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.03 Total: 13.95 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -30.25 -7.34 -37.59 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260251491.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.633 kcal (2) G-P(sol) polarization free energy of solvation -30.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds