Wall clock time and date at job start Thu Apr 9 2020 14:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30848 * 1 3 3 Si 1.86805 * 119.99775 * 2 1 4 4 H 1.48499 * 109.47120 * 270.00242 * 3 2 1 5 5 H 1.48500 * 109.46912 * 30.00163 * 3 2 1 6 6 H 1.48502 * 109.47062 * 150.00088 * 3 2 1 7 7 C 1.40072 * 120.00598 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00426 * 179.97438 * 7 2 1 9 9 C 1.40062 * 119.99685 * 359.97438 * 7 2 1 10 10 C 1.39622 * 127.05987 * 359.95753 * 9 7 2 11 11 N 1.33024 * 107.46211 * 180.02562 * 10 9 7 12 12 C 1.31005 * 109.98161 * 359.97438 * 11 10 9 13 13 C 1.50701 * 125.18082 * 180.02562 * 12 11 10 14 14 C 1.53174 * 109.54402 * 214.53409 * 13 12 11 15 15 C 1.53096 * 109.16347 * 183.15110 * 14 13 12 16 16 O 1.42899 * 109.41710 * 57.60428 * 15 14 13 17 17 C 1.42911 * 114.09525 * 298.84600 * 16 15 14 18 18 C 1.53091 * 109.41814 * 61.15735 * 17 16 15 19 19 N 1.35074 * 109.64486 * 0.02562 * 12 11 10 20 20 H 0.97005 * 126.48120 * 179.73936 * 19 12 11 21 21 H 0.96995 * 120.00436 * 359.97438 * 1 2 3 22 22 H 1.08004 * 126.26965 * 0.05731 * 10 9 7 23 23 H 1.09009 * 109.54034 * 334.79461 * 13 12 11 24 24 H 1.09003 * 109.52159 * 303.05066 * 14 13 12 25 25 H 1.08993 * 109.52774 * 63.24231 * 14 13 12 26 26 H 1.09002 * 109.47872 * 297.62111 * 15 14 13 27 27 H 1.08997 * 109.48062 * 177.59122 * 15 14 13 28 28 H 1.09002 * 109.48039 * 301.16945 * 17 16 15 29 29 H 1.09008 * 109.47559 * 181.14075 * 17 16 15 30 30 H 1.08997 * 109.52540 * 182.48389 * 18 17 16 31 31 H 1.09002 * 109.52288 * 62.29205 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 2.4899 2.0465 -1.4001 5 1 1.4398 2.6527 0.7001 6 1 3.5400 1.4403 0.7000 7 6 2.0090 -1.2130 -0.0005 8 1 3.0889 -1.2130 -0.0010 9 6 1.3087 -2.4260 -0.0005 10 6 -0.0769 -2.5977 0.0008 11 7 -0.3170 -3.9060 0.0008 12 6 0.8131 -4.5686 -0.0009 13 6 0.9392 -6.0703 -0.0020 14 6 2.1680 -6.4820 0.8146 15 6 2.3330 -8.0023 0.7426 16 8 2.4511 -8.4032 -0.6239 17 6 1.3110 -8.0865 -1.4254 18 6 1.1050 -6.5696 -1.4406 19 7 1.8483 -3.7008 -0.0016 20 1 2.7913 -3.9280 0.0007 21 1 -0.4850 0.8400 0.0004 22 1 -0.8181 -1.8121 0.0011 23 1 0.0440 -6.5117 0.4363 24 1 3.0557 -5.9995 0.4053 25 1 2.0337 -6.1789 1.8529 26 1 1.4629 -8.4839 1.1889 27 1 3.2305 -8.2967 1.2866 28 1 0.4275 -8.5692 -1.0075 29 1 1.4724 -8.4417 -2.4433 30 1 0.2104 -6.3292 -2.0150 31 1 1.9712 -6.0889 -1.8954 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260251491.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:16:19 Heat of formation + Delta-G solvation = -38.347012 kcal Electronic energy + Delta-G solvation = -15015.343526 eV Core-core repulsion = 12488.619993 eV Total energy + Delta-G solvation = -2526.723533 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.99028 -39.98301 -35.79977 -34.78532 -32.91719 -31.99201 -30.21636 -27.46666 -25.00023 -24.45965 -22.26151 -21.31376 -20.70018 -19.36892 -17.75248 -17.00041 -16.90235 -16.12795 -15.68731 -15.47951 -15.23997 -14.60437 -14.36298 -14.14113 -13.72466 -13.25002 -12.94312 -12.86789 -12.70612 -12.28098 -12.26180 -11.91730 -11.70450 -11.26271 -11.19894 -10.52233 -10.35550 -10.27408 -8.93096 -8.54001 -6.28963 1.29264 1.40472 1.55700 1.85055 2.20416 2.70328 2.89956 2.98939 3.35918 3.65863 3.90175 3.95994 4.08350 4.31358 4.36201 4.63894 4.67159 4.80179 4.83906 4.88369 5.02860 5.12693 5.15435 5.21028 5.32322 5.67331 5.71927 5.96542 6.27130 6.51716 6.83666 6.95360 7.37660 7.96460 8.43795 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.060256 B = 0.006304 C = 0.006043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.571067 B = 4440.710661 C = 4632.288746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.025 3.975 3 Si 1.006 2.994 4 H -0.264 1.264 5 H -0.269 1.269 6 H -0.257 1.257 7 C -0.478 4.478 8 H 0.080 0.920 9 C 0.153 3.847 10 C -0.178 4.178 11 N -0.517 5.517 12 C 0.107 3.893 13 C 0.017 3.983 14 C -0.145 4.145 15 C 0.067 3.933 16 O -0.398 6.398 17 C 0.068 3.932 18 C -0.140 4.140 19 N -0.597 5.597 20 H 0.409 0.591 21 H 0.286 0.714 22 H 0.162 0.838 23 H 0.085 0.915 24 H 0.062 0.938 25 H 0.074 0.926 26 H 0.066 0.934 27 H 0.115 0.885 28 H 0.066 0.934 29 H 0.111 0.889 30 H 0.066 0.934 31 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.672 -10.195 0.058 11.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.188 4.188 3 Si 0.826 3.174 4 H -0.188 1.188 5 H -0.193 1.193 6 H -0.180 1.180 7 C -0.513 4.513 8 H 0.098 0.902 9 C 0.039 3.961 10 C -0.324 4.324 11 N -0.237 5.237 12 C -0.151 4.151 13 C -0.003 4.003 14 C -0.184 4.184 15 C -0.010 4.010 16 O -0.317 6.317 17 C -0.009 4.009 18 C -0.179 4.179 19 N -0.210 5.210 20 H 0.246 0.754 21 H 0.096 0.904 22 H 0.179 0.821 23 H 0.103 0.897 24 H 0.081 0.919 25 H 0.093 0.907 26 H 0.084 0.916 27 H 0.133 0.867 28 H 0.084 0.916 29 H 0.129 0.871 30 H 0.084 0.916 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.734 -10.515 -0.008 11.531 hybrid contribution 0.887 1.575 0.067 1.809 sum 5.621 -8.939 0.058 10.560 Atomic orbital electron populations 1.69730 1.09052 1.29938 1.37599 1.26757 0.95703 1.04449 0.91918 0.84847 0.78427 0.74844 0.79294 1.18838 1.19319 1.18038 1.18760 0.94459 0.89197 1.48881 0.90156 1.19297 0.93399 0.84267 0.99098 1.23184 0.94742 0.91331 1.23138 1.69367 1.28201 1.06773 1.19374 1.22784 0.82914 0.93811 1.15545 1.19378 0.99443 0.84749 0.96775 1.22212 0.97052 0.98510 1.00587 1.22675 1.03682 0.91773 0.82853 1.87886 1.41426 1.80918 1.21471 1.22664 0.89035 0.92428 0.96738 1.22194 1.01992 0.97787 0.95913 1.42827 1.08450 1.05986 1.63691 0.75433 0.90350 0.82132 0.89707 0.91911 0.90733 0.91602 0.86736 0.91561 0.87092 0.91562 0.92657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.61 10.35 21.86 0.23 -45.38 16 2 C 0.02 1.28 5.50 85.28 0.47 1.75 16 3 Si 1.01 38.64 29.56 68.60 2.03 40.67 16 4 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 5 H -0.27 -9.88 7.11 99.48 0.71 -9.17 16 6 H -0.26 -9.41 7.11 99.48 0.71 -8.71 16 7 C -0.48 -25.98 9.45 23.16 0.22 -25.76 16 8 H 0.08 4.03 7.85 -2.91 -0.02 4.01 16 9 C 0.15 8.62 6.96 38.88 0.27 8.89 16 10 C -0.18 -10.69 10.88 84.85 0.92 -9.77 16 11 N -0.52 -28.76 11.18 -184.80 -2.07 -30.82 16 12 C 0.11 4.99 6.85 137.97 0.95 5.94 16 13 C 0.02 0.58 2.75 -11.42 -0.03 0.55 16 14 C -0.15 -4.00 5.20 30.68 0.16 -3.84 16 15 C 0.07 1.44 6.84 72.01 0.49 1.93 16 16 O -0.40 -9.88 10.77 -148.98 -1.60 -11.48 16 17 C 0.07 1.55 6.84 72.01 0.49 2.05 16 18 C -0.14 -4.23 5.41 30.68 0.17 -4.06 16 19 N -0.60 -28.33 5.97 -178.78 -1.07 -29.39 16 20 H 0.41 16.45 8.01 -92.70 -0.74 15.70 16 21 H 0.29 14.07 8.30 -92.71 -0.77 13.30 16 22 H 0.16 10.24 5.78 -2.91 -0.02 10.23 16 23 H 0.08 2.87 8.14 -2.38 -0.02 2.85 16 24 H 0.06 1.77 7.24 -2.39 -0.02 1.75 16 25 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 26 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.11 2.11 8.14 -2.38 -0.02 2.09 16 30 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -67.36 258.14 2.02 -65.34 By element: Atomic # 1 Polarization: 32.99 SS G_CDS: 0.40 Total: 33.39 kcal Atomic # 6 Polarization: -26.43 SS G_CDS: 4.11 Total: -22.32 kcal Atomic # 7 Polarization: -102.69 SS G_CDS: -2.91 Total: -105.59 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: -1.60 Total: -11.48 kcal Atomic # 14 Polarization: 38.64 SS G_CDS: 2.03 Total: 40.67 kcal Total: -67.36 2.02 -65.34 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260251491.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.991 kcal (2) G-P(sol) polarization free energy of solvation -67.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds