Wall clock time and date at job start Thu Apr 9 2020 14:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42900 * 113.99933 * 2 1 4 4 C 1.53011 * 109.46929 * 173.82992 * 3 2 1 5 5 C 1.50697 * 109.47221 * 53.83191 * 3 2 1 6 6 H 1.08003 * 119.99781 * 239.99662 * 5 3 2 7 7 C 1.37877 * 120.00081 * 59.99941 * 5 3 2 8 8 N 1.31508 * 120.00206 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99913 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47284 * 89.99342 * 9 7 5 11 11 H 1.48497 * 109.47247 * 210.00013 * 9 7 5 12 12 H 1.48506 * 109.47040 * 329.99968 * 9 7 5 13 13 C 1.50698 * 109.47227 * 293.82760 * 3 2 1 14 14 C 1.38165 * 120.02729 * 354.39048 * 13 3 2 15 15 C 1.38244 * 120.05323 * 179.97438 * 14 13 3 16 16 C 1.38286 * 120.11681 * 359.95998 * 15 14 13 17 17 C 1.38126 * 120.05165 * 0.02562 * 16 15 14 18 18 C 1.38713 * 120.03080 * 174.37071 * 13 3 2 19 19 O 1.35901 * 120.05040 * 0.04089 * 18 13 3 20 20 H 1.08997 * 109.46426 * 306.24401 * 1 2 3 21 21 H 1.08995 * 109.46862 * 66.23892 * 1 2 3 22 22 H 1.08994 * 109.47215 * 186.24348 * 1 2 3 23 23 H 1.08998 * 109.46993 * 179.97438 * 4 3 2 24 24 H 1.08994 * 109.46598 * 299.99647 * 4 3 2 25 25 H 1.08994 * 109.46875 * 59.99968 * 4 3 2 26 26 H 0.96997 * 119.99921 * 180.02562 * 8 7 5 27 27 H 1.08000 * 119.97555 * 359.97438 * 14 13 3 28 28 H 1.08007 * 119.93995 * 179.97438 * 15 14 13 29 29 H 1.07992 * 119.97497 * 179.74644 * 16 15 14 30 30 H 1.08004 * 120.02359 * 179.97438 * 17 16 15 31 31 H 0.96702 * 113.99834 * 90.00970 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5280 1.1880 0.1551 5 6 1.4486 2.1054 1.1470 6 1 0.9134 3.0234 0.9541 7 6 1.6180 1.6654 2.4426 8 7 2.2693 0.5473 2.6775 9 14 0.9211 2.6567 3.8643 10 1 -0.4624 2.2015 4.1539 11 1 1.7690 2.4600 5.0674 12 1 0.9027 4.0966 3.5016 13 6 1.6902 1.9978 -1.2997 14 6 1.0381 1.3118 -2.3062 15 6 0.7438 1.9466 -3.4985 16 6 1.1002 3.2694 -3.6868 17 6 1.7520 3.9597 -2.6835 18 6 2.0497 3.3245 -1.4864 19 8 2.6915 4.0013 -0.4980 20 1 -0.3632 0.6076 0.8288 21 1 -0.3633 0.4141 -0.9405 22 1 -0.3633 -1.0215 0.1118 23 1 3.9713 2.1837 0.1546 24 1 3.7594 0.6873 1.0951 25 1 3.9342 0.6094 -0.6745 26 1 2.3882 0.2376 3.5890 27 1 0.7581 0.2789 -2.1615 28 1 0.2344 1.4085 -4.2843 29 1 0.8728 3.7619 -4.6206 30 1 2.0305 4.9927 -2.8311 31 1 3.6556 3.9400 -0.5413 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260726572.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:15:13 Heat of formation + Delta-G solvation = -50.784771 kcal Electronic energy + Delta-G solvation = -15892.702285 eV Core-core repulsion = 13333.146658 eV Total energy + Delta-G solvation = -2559.555626 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.104 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.45788 -36.62910 -35.81838 -32.56419 -30.99706 -29.51353 -28.18411 -25.50339 -24.73883 -22.34821 -21.83312 -19.70049 -17.56083 -16.56164 -15.94515 -14.82596 -14.69773 -14.35283 -13.85580 -13.66654 -13.54096 -13.15898 -12.25698 -11.77470 -11.47385 -11.34337 -11.14496 -10.87869 -10.84827 -10.69689 -10.36286 -10.23531 -9.93108 -9.67471 -8.90671 -8.47566 -8.14193 -7.97507 -7.71346 -5.94515 -4.08893 1.89974 2.01092 3.30568 3.37869 3.44342 4.28309 4.45887 4.98885 5.16635 5.43967 5.51011 5.61433 5.68398 6.02324 6.18606 6.49041 6.54326 6.61044 6.65121 6.83355 6.86948 6.98147 7.11094 7.13773 7.17470 7.43536 7.49091 7.81575 8.00441 8.24971 8.47484 8.82964 9.08408 9.60157 11.05616 Molecular weight = 222.10amu Principal moments of inertia in cm(-1) A = 0.032110 B = 0.011812 C = 0.010373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.791054 B = 2369.900603 C = 2698.745859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.376 6.376 3 C 0.270 3.730 4 C -0.119 4.119 5 C -0.522 4.522 6 H 0.061 0.939 7 C 0.077 3.923 8 N -0.863 5.863 9 Si 0.887 3.113 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.272 1.272 13 C -0.093 4.093 14 C -0.113 4.113 15 C -0.140 4.140 16 C -0.130 4.130 17 C -0.159 4.159 18 C 0.117 3.883 19 O -0.476 6.476 20 H 0.050 0.950 21 H 0.022 0.978 22 H 0.050 0.950 23 H 0.041 0.959 24 H 0.095 0.905 25 H 0.015 0.985 26 H 0.259 0.741 27 H 0.131 0.869 28 H 0.113 0.887 29 H 0.113 0.887 30 H 0.117 0.883 31 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.138 2.739 -8.294 8.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.294 6.294 3 C 0.232 3.768 4 C -0.177 4.177 5 C -0.560 4.560 6 H 0.079 0.921 7 C -0.127 4.127 8 N -0.500 5.500 9 Si 0.715 3.285 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.197 1.197 13 C -0.094 4.094 14 C -0.131 4.131 15 C -0.158 4.158 16 C -0.148 4.148 17 C -0.178 4.178 18 C 0.073 3.927 19 O -0.286 6.286 20 H 0.068 0.932 21 H 0.040 0.960 22 H 0.069 0.931 23 H 0.060 0.940 24 H 0.114 0.886 25 H 0.034 0.966 26 H 0.069 0.931 27 H 0.149 0.851 28 H 0.131 0.869 29 H 0.131 0.869 30 H 0.135 0.865 31 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -0.516 2.597 -7.961 8.390 hybrid contribution -0.198 0.722 0.641 0.986 sum -0.715 3.319 -7.320 8.069 Atomic orbital electron populations 1.22456 0.84436 0.99397 0.99483 1.87839 1.17347 1.30061 1.94186 1.17966 0.91597 0.80588 0.86625 1.21599 0.94349 0.99319 1.02394 1.21315 1.36526 1.08119 0.90057 0.92120 1.24958 0.94622 0.94598 0.98556 1.69980 1.39658 1.20352 1.20015 0.86677 0.78924 0.80957 0.81967 1.20806 1.21232 1.19710 1.21654 0.96159 0.93556 0.98004 1.21225 0.98574 1.00727 0.92555 1.21043 1.02035 0.95125 0.97637 1.20774 1.00741 0.94830 0.98445 1.21332 1.02966 1.00029 0.93447 1.18255 0.97621 0.89844 0.87030 1.84963 1.22288 1.72361 1.48941 0.93182 0.96019 0.93102 0.94023 0.88604 0.96635 0.93113 0.85092 0.86932 0.86904 0.86540 0.76900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.89 9.80 101.05 0.99 1.88 16 2 O -0.38 -9.59 9.01 -35.23 -0.32 -9.91 16 3 C 0.27 6.69 0.46 -92.92 -0.04 6.64 16 4 C -0.12 -2.83 8.46 37.16 0.31 -2.52 16 5 C -0.52 -14.03 5.18 -34.44 -0.18 -14.21 16 6 H 0.06 1.72 7.12 -52.48 -0.37 1.35 16 7 C 0.08 2.09 5.12 -17.82 -0.09 2.00 16 8 N -0.86 -24.10 10.87 55.43 0.60 -23.49 16 9 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 13 C -0.09 -2.04 4.52 -104.47 -0.47 -2.52 16 14 C -0.11 -2.23 7.78 -39.61 -0.31 -2.54 16 15 C -0.14 -2.34 10.04 -39.56 -0.40 -2.74 16 16 C -0.13 -2.07 10.04 -39.60 -0.40 -2.46 16 17 C -0.16 -2.77 9.99 -39.43 -0.39 -3.16 16 18 C 0.12 2.39 6.14 -39.22 -0.24 2.15 16 19 O -0.48 -9.62 10.81 -19.43 -0.21 -9.83 16 20 H 0.05 1.23 6.66 -51.93 -0.35 0.89 16 21 H 0.02 0.45 5.11 -51.93 -0.27 0.18 16 22 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 23 H 0.04 0.89 5.84 -51.93 -0.30 0.59 16 24 H 0.10 2.52 6.07 -51.93 -0.32 2.20 16 25 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 27 H 0.13 2.56 5.54 -52.49 -0.29 2.27 16 28 H 0.11 1.54 8.06 -52.48 -0.42 1.12 16 29 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 30 H 0.12 1.75 8.06 -52.48 -0.42 1.33 16 31 H 0.38 6.00 7.75 45.56 0.35 6.35 16 LS Contribution 251.93 15.07 3.80 3.80 Total: -1.00 -30.00 251.93 -5.16 -35.16 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -2.79 Total: 5.44 kcal Atomic # 6 Polarization: -16.26 SS G_CDS: -1.22 Total: -17.48 kcal Atomic # 7 Polarization: -24.10 SS G_CDS: 0.60 Total: -23.49 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -0.53 Total: -19.73 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -30.00 -5.16 -35.16 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260726572.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.626 kcal (2) G-P(sol) polarization free energy of solvation -30.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds