Wall clock time and date at job start Thu Apr 9 2020 14:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42900 * 113.99933 * 2 1 4 4 C 1.53011 * 109.46929 * 173.82992 * 3 2 1 5 5 C 1.50697 * 109.47221 * 53.83191 * 3 2 1 6 6 H 1.08003 * 119.99781 * 239.99662 * 5 3 2 7 7 C 1.37877 * 120.00081 * 59.99941 * 5 3 2 8 8 N 1.31508 * 120.00206 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99913 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47284 * 89.99342 * 9 7 5 11 11 H 1.48497 * 109.47247 * 210.00013 * 9 7 5 12 12 H 1.48506 * 109.47040 * 329.99968 * 9 7 5 13 13 C 1.50698 * 109.47227 * 293.82760 * 3 2 1 14 14 C 1.38165 * 120.02729 * 354.39048 * 13 3 2 15 15 C 1.38244 * 120.05323 * 179.97438 * 14 13 3 16 16 C 1.38286 * 120.11681 * 359.95998 * 15 14 13 17 17 C 1.38126 * 120.05165 * 0.02562 * 16 15 14 18 18 C 1.38713 * 120.03080 * 174.37071 * 13 3 2 19 19 O 1.35901 * 120.05040 * 0.04089 * 18 13 3 20 20 H 1.08997 * 109.46426 * 306.24401 * 1 2 3 21 21 H 1.08995 * 109.46862 * 66.23892 * 1 2 3 22 22 H 1.08994 * 109.47215 * 186.24348 * 1 2 3 23 23 H 1.08998 * 109.46993 * 179.97438 * 4 3 2 24 24 H 1.08994 * 109.46598 * 299.99647 * 4 3 2 25 25 H 1.08994 * 109.46875 * 59.99968 * 4 3 2 26 26 H 0.96997 * 119.99921 * 180.02562 * 8 7 5 27 27 H 1.08000 * 119.97555 * 359.97438 * 14 13 3 28 28 H 1.08007 * 119.93995 * 179.97438 * 15 14 13 29 29 H 1.07992 * 119.97497 * 179.74644 * 16 15 14 30 30 H 1.08004 * 120.02359 * 179.97438 * 17 16 15 31 31 H 0.96702 * 113.99834 * 90.00970 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5280 1.1880 0.1551 5 6 1.4486 2.1054 1.1470 6 1 0.9134 3.0234 0.9541 7 6 1.6180 1.6654 2.4426 8 7 2.2693 0.5473 2.6775 9 14 0.9211 2.6567 3.8643 10 1 -0.4624 2.2015 4.1539 11 1 1.7690 2.4600 5.0674 12 1 0.9027 4.0966 3.5016 13 6 1.6902 1.9978 -1.2997 14 6 1.0381 1.3118 -2.3062 15 6 0.7438 1.9466 -3.4985 16 6 1.1002 3.2694 -3.6868 17 6 1.7520 3.9597 -2.6835 18 6 2.0497 3.3245 -1.4864 19 8 2.6915 4.0013 -0.4980 20 1 -0.3632 0.6076 0.8288 21 1 -0.3633 0.4141 -0.9405 22 1 -0.3633 -1.0215 0.1118 23 1 3.9713 2.1837 0.1546 24 1 3.7594 0.6873 1.0951 25 1 3.9342 0.6094 -0.6745 26 1 2.3882 0.2376 3.5890 27 1 0.7581 0.2789 -2.1615 28 1 0.2344 1.4085 -4.2843 29 1 0.8728 3.7619 -4.6206 30 1 2.0305 4.9927 -2.8311 31 1 3.6556 3.9400 -0.5413 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260726572.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:15:13 Heat of formation + Delta-G solvation = -71.058499 kcal Electronic energy + Delta-G solvation = -15893.581419 eV Core-core repulsion = 13333.146658 eV Total energy + Delta-G solvation = -2560.434761 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.104 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.98585 -38.38966 -37.27808 -34.57617 -32.71923 -30.99548 -29.75792 -27.50614 -26.61291 -23.94257 -23.26158 -21.40762 -19.10074 -18.47915 -17.50645 -16.66448 -16.27930 -16.00449 -15.47348 -15.39515 -15.21327 -14.84293 -13.91173 -13.38404 -13.25025 -12.97642 -12.81489 -12.73800 -12.59300 -12.43137 -12.22792 -12.04776 -11.65505 -11.41905 -10.68360 -10.54953 -9.87376 -9.53551 -9.22037 -7.99731 -6.19134 0.50952 0.59961 1.37415 1.40559 1.50591 2.43312 2.91227 3.16238 3.57493 3.72400 4.17241 4.20342 4.31266 4.64097 4.78085 4.81930 4.87884 4.93757 5.06231 5.16637 5.19948 5.23769 5.44636 5.59010 5.69753 5.71676 5.81011 6.02294 6.15259 6.27526 6.80949 7.07596 7.14847 7.53059 8.98665 Molecular weight = 222.10amu Principal moments of inertia in cm(-1) A = 0.032110 B = 0.011812 C = 0.010373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.791054 B = 2369.900603 C = 2698.745859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.398 6.398 3 C 0.265 3.735 4 C -0.114 4.114 5 C -0.521 4.521 6 H 0.040 0.960 7 C 0.037 3.963 8 N -0.887 5.887 9 Si 0.938 3.062 10 H -0.280 1.280 11 H -0.281 1.281 12 H -0.276 1.276 13 C -0.127 4.127 14 C -0.127 4.127 15 C -0.134 4.134 16 C -0.117 4.117 17 C -0.158 4.158 18 C 0.097 3.903 19 O -0.495 6.495 20 H 0.021 0.979 21 H 0.041 0.959 22 H 0.070 0.930 23 H 0.055 0.945 24 H 0.066 0.934 25 H 0.023 0.977 26 H 0.258 0.742 27 H 0.125 0.875 28 H 0.148 0.852 29 H 0.156 0.844 30 H 0.141 0.859 31 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.802 3.704 -10.272 10.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.317 6.317 3 C 0.227 3.773 4 C -0.171 4.171 5 C -0.559 4.559 6 H 0.058 0.942 7 C -0.165 4.165 8 N -0.525 5.525 9 Si 0.765 3.235 10 H -0.206 1.206 11 H -0.206 1.206 12 H -0.201 1.201 13 C -0.128 4.128 14 C -0.145 4.145 15 C -0.151 4.151 16 C -0.134 4.134 17 C -0.176 4.176 18 C 0.053 3.947 19 O -0.306 6.306 20 H 0.040 0.960 21 H 0.060 0.940 22 H 0.089 0.911 23 H 0.074 0.926 24 H 0.085 0.915 25 H 0.042 0.958 26 H 0.067 0.933 27 H 0.143 0.857 28 H 0.166 0.834 29 H 0.174 0.826 30 H 0.159 0.841 31 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -1.176 3.565 -9.942 10.627 hybrid contribution -0.007 0.450 1.146 1.231 sum -1.184 4.014 -8.796 9.741 Atomic orbital electron populations 1.22495 0.83280 1.00238 0.99337 1.87777 1.18725 1.30782 1.94407 1.17927 0.91480 0.80159 0.87772 1.21514 0.94693 0.99930 1.01008 1.21366 1.35914 1.07392 0.91235 0.94212 1.25529 0.95089 0.95429 1.00475 1.70094 1.40767 1.21471 1.20186 0.85881 0.78382 0.79452 0.79803 1.20627 1.20628 1.20073 1.21476 0.99032 0.94671 0.97605 1.21280 0.99099 1.00646 0.93501 1.21420 1.00996 0.95673 0.97048 1.21280 0.98367 0.94390 0.99389 1.21627 1.02370 1.01192 0.92454 1.18500 0.98436 0.89625 0.88176 1.84906 1.23603 1.72345 1.49769 0.95990 0.94047 0.91118 0.92584 0.91523 0.95790 0.93276 0.85712 0.83408 0.82645 0.84097 0.75402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.95 9.80 113.37 1.11 3.06 16 2 O -0.40 -20.59 9.01 -148.98 -1.34 -21.93 16 3 C 0.26 13.25 0.46 -12.28 -0.01 13.25 16 4 C -0.11 -5.51 8.46 71.99 0.61 -4.90 16 5 C -0.52 -28.53 5.18 25.60 0.13 -28.39 16 6 H 0.04 2.30 7.12 -2.91 -0.02 2.28 16 7 C 0.04 2.01 5.12 84.66 0.43 2.45 16 8 N -0.89 -50.62 10.87 21.45 0.23 -50.39 16 9 Si 0.94 44.45 29.54 68.60 2.03 46.48 16 10 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 12 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 13 C -0.13 -5.52 4.52 -19.77 -0.09 -5.61 16 14 C -0.13 -4.81 7.78 22.25 0.17 -4.64 16 15 C -0.13 -3.94 10.04 22.28 0.22 -3.72 16 16 C -0.12 -3.17 10.04 22.25 0.22 -2.94 16 17 C -0.16 -4.99 9.99 22.36 0.22 -4.77 16 18 C 0.10 3.84 6.14 22.51 0.14 3.98 16 19 O -0.50 -19.84 10.81 -92.44 -1.00 -20.84 16 20 H 0.02 1.09 6.66 -2.39 -0.02 1.08 16 21 H 0.04 1.69 5.11 -2.39 -0.01 1.68 16 22 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 23 H 0.06 2.44 5.84 -2.39 -0.01 2.43 16 24 H 0.07 3.60 6.07 -2.39 -0.01 3.58 16 25 H 0.02 1.05 8.14 -2.39 -0.02 1.04 16 26 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 27 H 0.13 4.76 5.54 -2.91 -0.02 4.74 16 28 H 0.15 3.29 8.06 -2.91 -0.02 3.27 16 29 H 0.16 2.95 8.06 -2.91 -0.02 2.92 16 30 H 0.14 3.70 8.06 -2.91 -0.02 3.67 16 31 H 0.39 12.36 7.75 -74.06 -0.57 11.79 16 Total: -1.00 -64.93 251.93 3.66 -61.26 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: 0.57 Total: 17.65 kcal Atomic # 6 Polarization: -35.41 SS G_CDS: 3.17 Total: -32.23 kcal Atomic # 7 Polarization: -50.62 SS G_CDS: 0.23 Total: -50.39 kcal Atomic # 8 Polarization: -40.42 SS G_CDS: -2.34 Total: -42.76 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -64.93 3.66 -61.26 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260726572.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.796 kcal (2) G-P(sol) polarization free energy of solvation -64.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds