Wall clock time and date at job start Thu Apr 9 2020 14:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00175 * 2 1 4 4 H 1.48502 * 109.47315 * 269.99965 * 3 2 1 5 5 H 1.48500 * 109.47152 * 29.99969 * 3 2 1 6 6 H 1.48507 * 109.46975 * 149.99780 * 3 2 1 7 7 C 1.37882 * 119.99815 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99803 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00053 * 0.02562 * 7 2 1 10 10 C 1.50700 * 109.47116 * 179.97438 * 9 7 2 11 11 N 1.30788 * 125.72380 * 269.82439 * 10 9 7 12 12 C 1.34428 * 109.31836 * 179.88156 * 11 10 9 13 13 C 1.33861 * 107.79877 * 0.20264 * 12 11 10 14 14 N 1.34404 * 125.72218 * 89.99967 * 10 9 7 15 15 C 1.46476 * 128.44501 * 359.81169 * 14 10 9 16 16 C 1.53280 * 108.69219 * 197.56537 * 15 14 10 17 17 C 1.53117 * 109.70718 * 309.22407 * 16 15 14 18 18 C 1.50708 * 128.68003 * 179.88241 * 13 12 11 19 19 H 1.09004 * 109.74447 * 76.14333 * 18 13 12 20 20 O 1.42897 * 109.78570 * 315.44532 * 18 13 12 21 21 H 0.97000 * 119.99926 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.46970 * 59.99471 * 9 7 2 23 23 H 1.09003 * 109.47244 * 299.99895 * 9 7 2 24 24 H 1.08000 * 126.10094 * 180.22563 * 12 11 10 25 25 H 1.09007 * 109.59695 * 317.32737 * 15 14 10 26 26 H 1.08995 * 109.60286 * 77.63919 * 15 14 10 27 27 H 1.09007 * 109.43137 * 69.29735 * 16 15 14 28 28 H 1.09001 * 109.43026 * 189.15174 * 16 15 14 29 29 H 1.09001 * 109.49591 * 189.86141 * 17 16 15 30 30 H 1.09003 * 109.49400 * 309.92918 * 17 16 15 31 31 H 0.96695 * 114.00298 * 61.36825 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2302 -3.6446 0.0005 11 7 2.7240 -4.2272 -1.0613 12 6 3.5648 -5.2049 -0.6816 13 6 3.5869 -5.2288 0.6566 14 7 2.7402 -4.2411 1.0917 15 6 2.4833 -3.9349 2.5009 16 6 3.5943 -4.5624 3.3503 17 6 3.7598 -6.0377 2.9756 18 6 4.3673 -6.1392 1.5696 19 1 5.4114 -5.8271 1.5963 20 8 4.2780 -7.4862 1.1012 21 1 -0.4850 0.8400 0.0004 22 1 0.6246 -2.5570 -0.8897 23 1 0.6239 -2.5567 0.8903 24 1 4.1232 -5.8549 -1.3390 25 1 2.4787 -2.8544 2.6453 26 1 1.5181 -4.3471 2.7947 27 1 4.5309 -4.0349 3.1694 28 1 3.3324 -4.4834 4.4055 29 1 4.4208 -6.5235 3.6935 30 1 2.7862 -6.5277 2.9880 31 1 4.6447 -7.6202 0.2165 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260813880.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:15:41 Heat of formation + Delta-G solvation = -4.747744 kcal Electronic energy + Delta-G solvation = -15210.055307 eV Core-core repulsion = 12684.788747 eV Total energy + Delta-G solvation = -2525.266560 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.69662 -37.37956 -35.42188 -33.37091 -31.55887 -30.25164 -28.63145 -26.45227 -23.73537 -23.06505 -21.61118 -19.83241 -18.53088 -17.55144 -16.52860 -15.96223 -15.29072 -14.58068 -14.51765 -14.14351 -13.84852 -13.16545 -13.03069 -12.51319 -12.10278 -11.90408 -11.51816 -11.26646 -11.18191 -10.93548 -10.76690 -10.71627 -10.22644 -9.91866 -9.51409 -9.11424 -8.83613 -8.50750 -7.51421 -6.12168 -4.16483 2.67157 3.27202 3.33528 3.36027 3.42920 3.91079 4.19960 4.40139 4.65327 4.77642 4.98418 5.07518 5.22696 5.33934 5.46437 5.54769 5.68176 5.72668 5.78371 5.93763 6.08639 6.15278 6.27244 7.03449 7.22277 7.38689 7.53808 7.61063 7.82774 7.94698 8.22524 8.86038 8.96551 9.47530 10.97630 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.041170 B = 0.007698 C = 0.007173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.940970 B = 3636.657504 C = 3902.793070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.899 3.101 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.513 4.513 8 H 0.056 0.944 9 C 0.094 3.906 10 C 0.275 3.725 11 N -0.512 5.512 12 C -0.017 4.017 13 C -0.102 4.102 14 N -0.449 5.449 15 C 0.104 3.896 16 C -0.128 4.128 17 C -0.116 4.116 18 C 0.189 3.811 19 H 0.067 0.933 20 O -0.559 6.559 21 H 0.264 0.736 22 H 0.052 0.948 23 H 0.034 0.966 24 H 0.156 0.844 25 H 0.102 0.898 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.418 -9.764 7.075 14.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.726 3.274 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.552 4.552 8 H 0.075 0.925 9 C 0.055 3.945 10 C 0.012 3.988 11 N -0.230 5.230 12 C -0.166 4.166 13 C -0.216 4.216 14 N -0.133 5.133 15 C -0.019 4.019 16 C -0.166 4.166 17 C -0.154 4.154 18 C 0.129 3.871 19 H 0.085 0.915 20 O -0.364 6.364 21 H 0.074 0.926 22 H 0.070 0.930 23 H 0.052 0.948 24 H 0.173 0.827 25 H 0.120 0.880 26 H 0.097 0.903 27 H 0.092 0.908 28 H 0.107 0.893 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 6.757 -9.499 7.004 13.599 hybrid contribution 0.909 0.824 0.163 1.238 sum 7.666 -8.674 7.167 13.615 Atomic orbital electron populations 1.69941 1.06003 1.27101 1.50017 1.24962 0.94896 0.99260 0.94926 0.86478 0.79631 0.82852 0.78396 1.20374 1.21078 1.19921 1.20918 0.93036 0.89538 1.51685 0.92531 1.17866 0.90745 0.86519 0.99362 1.24455 0.98155 0.96562 0.79637 1.70573 1.13782 1.10072 1.28553 1.21650 1.02783 1.00654 0.91470 1.21545 1.04565 0.99584 0.95895 1.45281 1.34190 1.26465 1.07333 1.21904 0.98877 1.02873 0.78231 1.21825 0.99344 0.95258 1.00145 1.21606 1.02420 0.96447 0.94889 1.20013 0.96030 0.79862 0.91203 0.91526 1.86475 1.85651 1.26649 1.37641 0.92619 0.92972 0.94802 0.82655 0.87984 0.90284 0.90768 0.89282 0.90608 0.90703 0.77216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.80 13.29 55.43 0.74 -25.06 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.51 -14.34 9.09 -34.44 -0.31 -14.66 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 9 C 0.09 2.46 5.33 -29.04 -0.15 2.30 16 10 C 0.27 6.54 7.13 -155.75 -1.11 5.43 16 11 N -0.51 -12.24 11.27 -11.02 -0.12 -12.37 16 12 C -0.02 -0.32 11.51 -17.95 -0.21 -0.53 16 13 C -0.10 -1.83 6.28 -81.73 -0.51 -2.35 16 14 N -0.45 -8.91 3.13 -109.43 -0.34 -9.25 16 15 C 0.10 1.65 6.61 -3.91 -0.03 1.62 16 16 C -0.13 -1.53 5.91 -26.53 -0.16 -1.69 16 17 C -0.12 -1.41 5.62 -26.41 -0.15 -1.56 16 18 C 0.19 2.59 3.85 -27.62 -0.11 2.48 16 19 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 20 O -0.56 -7.26 13.30 -35.23 -0.47 -7.73 16 21 H 0.26 7.19 8.31 -40.82 -0.34 6.86 16 22 H 0.05 1.48 8.14 -51.93 -0.42 1.05 16 23 H 0.03 0.88 7.95 -51.93 -0.41 0.47 16 24 H 0.16 2.41 8.06 -52.49 -0.42 1.98 16 25 H 0.10 1.72 8.14 -51.92 -0.42 1.29 16 26 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 27 H 0.07 0.90 8.11 -51.93 -0.42 0.48 16 28 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 0.99 8.12 -51.93 -0.42 0.56 16 31 H 0.38 3.54 8.85 45.56 0.40 3.94 16 LS Contribution 264.65 15.07 3.99 3.99 Total: -1.00 -32.71 264.65 -7.42 -40.12 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -3.35 Total: 1.31 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: -2.83 Total: -7.33 kcal Atomic # 7 Polarization: -46.95 SS G_CDS: 0.27 Total: -46.68 kcal Atomic # 8 Polarization: -7.26 SS G_CDS: -0.47 Total: -7.73 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -32.71 -7.42 -40.12 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260813880.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.377 kcal (2) G-P(sol) polarization free energy of solvation -32.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds