Wall clock time and date at job start Thu Apr 9 2020 14:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00175 * 2 1 4 4 H 1.48502 * 109.47315 * 269.99965 * 3 2 1 5 5 H 1.48500 * 109.47152 * 29.99969 * 3 2 1 6 6 H 1.48507 * 109.46975 * 149.99780 * 3 2 1 7 7 C 1.37882 * 119.99815 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99803 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00053 * 0.02562 * 7 2 1 10 10 C 1.50700 * 109.47116 * 179.97438 * 9 7 2 11 11 N 1.30788 * 125.72380 * 269.82439 * 10 9 7 12 12 C 1.34428 * 109.31836 * 179.88156 * 11 10 9 13 13 C 1.33861 * 107.79877 * 0.20264 * 12 11 10 14 14 N 1.34404 * 125.72218 * 89.99967 * 10 9 7 15 15 C 1.46476 * 128.44501 * 359.81169 * 14 10 9 16 16 C 1.53280 * 108.69219 * 197.56537 * 15 14 10 17 17 C 1.53117 * 109.70718 * 309.22407 * 16 15 14 18 18 C 1.50708 * 128.68003 * 179.88241 * 13 12 11 19 19 H 1.09004 * 109.74447 * 76.14333 * 18 13 12 20 20 O 1.42897 * 109.78570 * 315.44532 * 18 13 12 21 21 H 0.97000 * 119.99926 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.46970 * 59.99471 * 9 7 2 23 23 H 1.09003 * 109.47244 * 299.99895 * 9 7 2 24 24 H 1.08000 * 126.10094 * 180.22563 * 12 11 10 25 25 H 1.09007 * 109.59695 * 317.32737 * 15 14 10 26 26 H 1.08995 * 109.60286 * 77.63919 * 15 14 10 27 27 H 1.09007 * 109.43137 * 69.29735 * 16 15 14 28 28 H 1.09001 * 109.43026 * 189.15174 * 16 15 14 29 29 H 1.09001 * 109.49591 * 189.86141 * 17 16 15 30 30 H 1.09003 * 109.49400 * 309.92918 * 17 16 15 31 31 H 0.96695 * 114.00298 * 61.36825 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2302 -3.6446 0.0005 11 7 2.7240 -4.2272 -1.0613 12 6 3.5648 -5.2049 -0.6816 13 6 3.5869 -5.2288 0.6566 14 7 2.7402 -4.2411 1.0917 15 6 2.4833 -3.9349 2.5009 16 6 3.5943 -4.5624 3.3503 17 6 3.7598 -6.0377 2.9756 18 6 4.3673 -6.1392 1.5696 19 1 5.4114 -5.8271 1.5963 20 8 4.2780 -7.4862 1.1012 21 1 -0.4850 0.8400 0.0004 22 1 0.6246 -2.5570 -0.8897 23 1 0.6239 -2.5567 0.8903 24 1 4.1232 -5.8549 -1.3390 25 1 2.4787 -2.8544 2.6453 26 1 1.5181 -4.3471 2.7947 27 1 4.5309 -4.0349 3.1694 28 1 3.3324 -4.4834 4.4055 29 1 4.4208 -6.5235 3.6935 30 1 2.7862 -6.5277 2.9880 31 1 4.6447 -7.6202 0.2165 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260813880.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:15:41 Heat of formation + Delta-G solvation = -28.296170 kcal Electronic energy + Delta-G solvation = -15211.076443 eV Core-core repulsion = 12684.788747 eV Total energy + Delta-G solvation = -2526.287696 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.22788 -38.49869 -36.60414 -35.45969 -33.00712 -31.94950 -30.12267 -28.04522 -25.45159 -24.54863 -22.88848 -21.38406 -19.88887 -18.69870 -18.61543 -17.37998 -16.68953 -16.48587 -15.82150 -15.36621 -15.11746 -14.48952 -14.39735 -14.22846 -13.93046 -13.51797 -13.08979 -12.73147 -12.64114 -12.43627 -12.19771 -12.03451 -11.86186 -11.59921 -11.26317 -10.73794 -10.66622 -10.40136 -9.10418 -8.25552 -6.40197 1.14727 1.38243 1.40733 1.50893 1.97887 2.22505 2.41967 3.05155 3.23749 3.58726 3.66503 3.82111 3.92542 4.01853 4.29973 4.37172 4.45476 4.57349 4.70717 4.73797 4.89824 5.00821 5.13701 5.20173 5.29785 5.59286 5.64861 5.92580 6.01657 6.39802 6.66889 6.78219 7.28393 7.32161 8.83505 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.041170 B = 0.007698 C = 0.007173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.940970 B = 3636.657504 C = 3902.793070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.014 3.986 3 Si 0.968 3.032 4 H -0.276 1.276 5 H -0.273 1.273 6 H -0.266 1.266 7 C -0.529 4.529 8 H 0.046 0.954 9 C 0.108 3.892 10 C 0.231 3.769 11 N -0.548 5.548 12 C -0.044 4.044 13 C -0.081 4.081 14 N -0.447 5.447 15 C 0.091 3.909 16 C -0.116 4.116 17 C -0.114 4.114 18 C 0.191 3.809 19 H 0.093 0.907 20 O -0.564 6.564 21 H 0.269 0.731 22 H 0.015 0.985 23 H 0.024 0.976 24 H 0.191 0.809 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.076 0.924 28 H 0.124 0.876 29 H 0.108 0.892 30 H 0.063 0.937 31 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.494 -10.457 8.733 16.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.186 4.186 3 Si 0.792 3.208 4 H -0.201 1.201 5 H -0.197 1.197 6 H -0.190 1.190 7 C -0.568 4.568 8 H 0.065 0.935 9 C 0.070 3.930 10 C -0.032 4.032 11 N -0.267 5.267 12 C -0.192 4.192 13 C -0.196 4.196 14 N -0.130 5.130 15 C -0.031 4.031 16 C -0.154 4.154 17 C -0.152 4.152 18 C 0.131 3.869 19 H 0.110 0.890 20 O -0.372 6.372 21 H 0.078 0.922 22 H 0.033 0.967 23 H 0.042 0.958 24 H 0.208 0.792 25 H 0.103 0.897 26 H 0.105 0.895 27 H 0.095 0.905 28 H 0.142 0.858 29 H 0.127 0.873 30 H 0.082 0.918 31 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 8.835 -10.206 8.671 16.044 hybrid contribution 0.266 0.930 -0.366 1.035 sum 9.101 -9.276 8.304 15.422 Atomic orbital electron populations 1.70048 1.07523 1.28350 1.50376 1.25839 0.95776 1.02870 0.94096 0.85402 0.78596 0.78263 0.78512 1.20133 1.19742 1.19035 1.21091 0.92615 0.90807 1.52241 0.93543 1.17436 0.90867 0.87721 0.97010 1.23762 1.00137 0.97778 0.81479 1.70425 1.14989 1.11542 1.29764 1.22284 1.03072 1.00687 0.93107 1.22416 1.02535 0.98351 0.96279 1.45465 1.33454 1.26071 1.07984 1.22250 1.01352 1.02523 0.76951 1.21846 0.97626 0.94852 1.01067 1.21653 1.02518 0.96390 0.94607 1.20274 0.96529 0.79226 0.90888 0.88966 1.86464 1.85931 1.25734 1.39025 0.92161 0.96673 0.95785 0.79244 0.89681 0.89539 0.90498 0.85769 0.87325 0.91812 0.75364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.74 13.29 21.45 0.28 -54.46 16 2 C 0.01 0.77 5.46 84.66 0.46 1.23 16 3 Si 0.97 44.01 29.54 68.60 2.03 46.04 16 4 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 5 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 6 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 7 C -0.53 -30.67 9.09 25.60 0.23 -30.44 16 8 H 0.05 2.72 7.74 -2.91 -0.02 2.70 16 9 C 0.11 6.03 5.33 29.10 0.16 6.18 16 10 C 0.23 11.44 7.13 138.25 0.99 12.43 16 11 N -0.55 -26.94 11.27 -188.77 -2.13 -29.07 16 12 C -0.04 -1.68 11.51 83.30 0.96 -0.72 16 13 C -0.08 -2.78 6.28 40.73 0.26 -2.52 16 14 N -0.45 -17.71 3.13 -500.12 -1.57 -19.28 16 15 C 0.09 2.82 6.61 86.48 0.57 3.39 16 16 C -0.12 -2.40 5.91 30.73 0.18 -2.22 16 17 C -0.11 -2.32 5.62 30.80 0.17 -2.14 16 18 C 0.19 4.54 3.85 30.02 0.12 4.66 16 19 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 20 O -0.56 -12.60 13.30 -148.98 -1.98 -14.58 16 21 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 22 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 23 H 0.02 1.33 7.95 -2.39 -0.02 1.31 16 24 H 0.19 5.53 8.06 -2.91 -0.02 5.51 16 25 H 0.08 2.91 8.14 -2.38 -0.02 2.89 16 26 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 27 H 0.08 1.59 8.11 -2.38 -0.02 1.57 16 28 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.06 1.47 8.12 -2.39 -0.02 1.45 16 31 H 0.40 5.96 8.85 -74.06 -0.66 5.31 16 Total: -1.00 -73.06 264.65 1.20 -71.86 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: 0.47 Total: 9.64 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: 4.09 Total: -10.16 kcal Atomic # 7 Polarization: -99.39 SS G_CDS: -3.41 Total: -102.80 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: -1.98 Total: -14.58 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -73.06 1.20 -71.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260813880.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.561 kcal (2) G-P(sol) polarization free energy of solvation -73.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds