Wall clock time and date at job start Thu Apr 9 2020 14:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 119.99818 * 2 1 4 4 H 1.48500 * 109.47362 * 240.00023 * 3 2 1 5 5 H 1.48499 * 109.47329 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.47161 * 119.99969 * 3 2 1 7 7 C 1.37877 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00191 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99907 * 0.02562 * 7 2 1 10 10 C 1.50698 * 109.46833 * 179.97438 * 9 7 2 11 11 C 1.34858 * 126.65417 * 84.95993 * 10 9 7 12 12 N 1.34292 * 108.07472 * 180.02562 * 11 10 9 13 13 C 1.30092 * 109.20774 * 359.97313 * 12 11 10 14 14 N 1.35421 * 108.63251 * 0.04936 * 13 12 11 15 15 C 1.46468 * 124.82743 * 179.90780 * 14 13 12 16 16 C 1.53258 * 108.80237 * 342.91549 * 15 14 13 17 17 C 1.53149 * 109.49416 * 50.34623 * 16 15 14 18 18 H 1.08996 * 109.51266 * 50.44796 * 17 16 15 19 19 O 1.42905 * 109.50619 * 170.58780 * 17 16 15 20 20 C 1.51041 * 127.38815 * 180.10774 * 13 12 11 21 21 H 0.96995 * 120.00362 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.47234 * 59.99633 * 9 7 2 23 23 H 1.08997 * 109.46821 * 299.99379 * 9 7 2 24 24 H 1.08005 * 125.96426 * 0.02562 * 11 10 9 25 25 H 1.09008 * 109.58241 * 223.12195 * 15 14 13 26 26 H 1.09001 * 109.58118 * 102.71123 * 15 14 13 27 27 H 1.09002 * 109.46768 * 170.35409 * 16 15 14 28 28 H 1.08998 * 109.46728 * 290.34315 * 16 15 14 29 29 H 0.96708 * 113.99809 * 179.97438 * 19 17 16 30 30 H 1.09000 * 109.71807 * 283.63543 * 20 13 12 31 31 H 1.09002 * 109.71558 * 44.27851 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2304 -3.6446 0.0005 11 6 2.8258 -4.1947 1.0783 12 7 3.6249 -5.1862 0.6520 13 6 3.5472 -5.2715 -0.6438 14 7 2.6868 -4.3251 -1.0888 15 6 2.3386 -4.1057 -2.4945 16 6 3.3877 -4.7918 -3.3762 17 6 3.5780 -6.2388 -2.9121 18 1 2.6062 -6.7253 -2.8290 19 8 4.3851 -6.9415 -3.8592 20 6 4.2719 -6.2439 -1.5441 21 1 -0.4850 0.8400 0.0004 22 1 0.6247 -2.5571 -0.8896 23 1 0.6242 -2.5567 0.8903 24 1 2.6847 -3.8909 2.1050 25 1 2.3270 -3.0363 -2.7054 26 1 1.3558 -4.5309 -2.6980 27 1 3.0519 -4.7841 -4.4132 28 1 4.3344 -4.2575 -3.2970 29 1 4.5473 -7.8665 -3.6282 30 1 5.3110 -5.9353 -1.6580 31 1 4.2299 -7.2446 -1.1139 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260815022.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:15:46 Heat of formation + Delta-G solvation = -6.980746 kcal Electronic energy + Delta-G solvation = -15090.665202 eV Core-core repulsion = 12565.301812 eV Total energy + Delta-G solvation = -2525.363390 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.66944 -37.89471 -34.68301 -33.60461 -32.05476 -29.67569 -29.24274 -26.21831 -24.03538 -22.85587 -21.54880 -19.95105 -18.52324 -17.39399 -16.49152 -15.98317 -15.42920 -14.77405 -14.55202 -14.25768 -13.58328 -13.33966 -12.64265 -12.52027 -12.28589 -11.91271 -11.67515 -11.53316 -11.35964 -10.96305 -10.78141 -10.70071 -10.19420 -9.99838 -9.57715 -9.19747 -8.83410 -8.50523 -7.33512 -6.12468 -4.17791 2.81246 3.27317 3.31878 3.35346 3.39362 3.83770 3.92271 4.38420 4.53878 4.64301 4.79971 4.99138 5.21543 5.34242 5.40007 5.65638 5.73033 5.78102 5.80300 5.87787 6.06313 6.35784 6.56847 6.87625 7.33615 7.42053 7.59033 7.62121 7.82289 7.88848 8.21162 8.80330 8.86601 9.47121 10.96387 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.038820 B = 0.007394 C = 0.006851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.111518 B = 3785.876412 C = 4086.002454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.061 3.939 3 Si 0.897 3.103 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.516 4.516 8 H 0.057 0.943 9 C 0.084 3.916 10 C 0.049 3.951 11 C -0.064 4.064 12 N -0.487 5.487 13 C 0.162 3.838 14 N -0.455 5.455 15 C 0.110 3.890 16 C -0.126 4.126 17 C 0.104 3.896 18 H 0.062 0.938 19 O -0.563 6.563 20 C -0.054 4.054 21 H 0.264 0.736 22 H 0.025 0.975 23 H 0.045 0.955 24 H 0.164 0.836 25 H 0.104 0.896 26 H 0.080 0.920 27 H 0.093 0.907 28 H 0.080 0.920 29 H 0.380 0.620 30 H 0.089 0.911 31 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.701 -10.787 -6.853 13.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.141 4.141 3 Si 0.725 3.275 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.554 4.554 8 H 0.075 0.925 9 C 0.046 3.954 10 C -0.067 4.067 11 C -0.209 4.209 12 N -0.207 5.207 13 C -0.098 4.098 14 N -0.141 5.141 15 C -0.013 4.013 16 C -0.164 4.164 17 C 0.045 3.955 18 H 0.080 0.920 19 O -0.369 6.369 20 C -0.093 4.093 21 H 0.074 0.926 22 H 0.043 0.957 23 H 0.063 0.937 24 H 0.181 0.819 25 H 0.122 0.878 26 H 0.098 0.902 27 H 0.111 0.889 28 H 0.099 0.901 29 H 0.227 0.773 30 H 0.107 0.893 31 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.972 -10.550 -6.781 13.491 hybrid contribution -0.079 1.030 -0.088 1.037 sum 4.893 -9.520 -6.869 12.718 Atomic orbital electron populations 1.69931 1.06023 1.27165 1.50087 1.24986 0.94880 0.99273 0.94954 0.86567 0.79526 0.82625 0.78821 1.20257 1.21131 1.20002 1.21003 0.93085 0.89726 1.51605 0.92506 1.17855 0.91241 0.87546 0.98739 1.22248 1.01708 0.97440 0.85275 1.21940 1.01725 0.98399 0.98866 1.69837 1.22277 1.20582 1.07995 1.22585 0.99485 0.96639 0.91104 1.45174 1.34882 1.27006 1.06992 1.21803 0.98172 1.03231 0.78078 1.21817 1.00418 0.93848 1.00269 1.21838 0.93266 0.93183 0.87254 0.91984 1.86517 1.73420 1.27948 1.48985 1.20710 0.99128 0.97342 0.92161 0.92623 0.95691 0.93736 0.81915 0.87776 0.90158 0.88887 0.90119 0.77296 0.89311 0.89423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.64 13.29 55.43 0.74 -24.90 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.52 -14.19 9.09 -34.44 -0.31 -14.50 16 8 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 9 C 0.08 2.13 5.34 -29.03 -0.16 1.98 16 10 C 0.05 1.11 6.17 -81.80 -0.50 0.60 16 11 C -0.06 -1.43 11.80 -17.67 -0.21 -1.63 16 12 N -0.49 -10.43 11.24 -10.62 -0.12 -10.55 16 13 C 0.16 3.05 7.65 -155.24 -1.19 1.86 16 14 N -0.46 -8.88 3.13 -109.19 -0.34 -9.22 16 15 C 0.11 1.72 6.60 -3.93 -0.03 1.69 16 16 C -0.13 -1.60 5.59 -26.52 -0.15 -1.75 16 17 C 0.10 1.22 3.49 -26.45 -0.09 1.13 16 18 H 0.06 0.70 8.12 -51.93 -0.42 0.28 16 19 O -0.56 -5.84 13.33 -35.23 -0.47 -6.31 16 20 C -0.05 -0.73 5.96 -27.51 -0.16 -0.89 16 21 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 22 H 0.02 0.64 7.91 -51.93 -0.41 0.23 16 23 H 0.04 1.18 8.14 -51.93 -0.42 0.76 16 24 H 0.16 3.42 8.06 -52.48 -0.42 3.00 16 25 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 26 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 28 H 0.08 1.09 8.12 -51.93 -0.42 0.67 16 29 H 0.38 2.24 9.09 45.56 0.41 2.65 16 30 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 265.20 15.07 4.00 4.00 Total: -1.00 -32.07 265.20 -7.46 -39.52 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -3.34 Total: 1.18 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: -2.90 Total: -9.93 kcal Atomic # 7 Polarization: -44.95 SS G_CDS: 0.27 Total: -44.67 kcal Atomic # 8 Polarization: -5.84 SS G_CDS: -0.47 Total: -6.31 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -32.07 -7.46 -39.52 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260815022.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.541 kcal (2) G-P(sol) polarization free energy of solvation -32.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds