Wall clock time and date at job start Thu Apr 9 2020 14:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 119.99818 * 2 1 4 4 H 1.48500 * 109.47362 * 240.00023 * 3 2 1 5 5 H 1.48499 * 109.47329 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.47161 * 119.99969 * 3 2 1 7 7 C 1.37877 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00191 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99907 * 0.02562 * 7 2 1 10 10 C 1.50698 * 109.46833 * 179.97438 * 9 7 2 11 11 C 1.34858 * 126.65417 * 84.95993 * 10 9 7 12 12 N 1.34292 * 108.07472 * 180.02562 * 11 10 9 13 13 C 1.30092 * 109.20774 * 359.97313 * 12 11 10 14 14 N 1.35421 * 108.63251 * 0.04936 * 13 12 11 15 15 C 1.46468 * 124.82743 * 179.90780 * 14 13 12 16 16 C 1.53258 * 108.80237 * 342.91549 * 15 14 13 17 17 C 1.53149 * 109.49416 * 50.34623 * 16 15 14 18 18 H 1.08996 * 109.51266 * 50.44796 * 17 16 15 19 19 O 1.42905 * 109.50619 * 170.58780 * 17 16 15 20 20 C 1.51041 * 127.38815 * 180.10774 * 13 12 11 21 21 H 0.96995 * 120.00362 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.47234 * 59.99633 * 9 7 2 23 23 H 1.08997 * 109.46821 * 299.99379 * 9 7 2 24 24 H 1.08005 * 125.96426 * 0.02562 * 11 10 9 25 25 H 1.09008 * 109.58241 * 223.12195 * 15 14 13 26 26 H 1.09001 * 109.58118 * 102.71123 * 15 14 13 27 27 H 1.09002 * 109.46768 * 170.35409 * 16 15 14 28 28 H 1.08998 * 109.46728 * 290.34315 * 16 15 14 29 29 H 0.96708 * 113.99809 * 179.97438 * 19 17 16 30 30 H 1.09000 * 109.71807 * 283.63543 * 20 13 12 31 31 H 1.09002 * 109.71558 * 44.27851 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2304 -3.6446 0.0005 11 6 2.8258 -4.1947 1.0783 12 7 3.6249 -5.1862 0.6520 13 6 3.5472 -5.2715 -0.6438 14 7 2.6868 -4.3251 -1.0888 15 6 2.3386 -4.1057 -2.4945 16 6 3.3877 -4.7918 -3.3762 17 6 3.5780 -6.2388 -2.9121 18 1 2.6062 -6.7253 -2.8290 19 8 4.3851 -6.9415 -3.8592 20 6 4.2719 -6.2439 -1.5441 21 1 -0.4850 0.8400 0.0004 22 1 0.6247 -2.5571 -0.8896 23 1 0.6242 -2.5567 0.8903 24 1 2.6847 -3.8909 2.1050 25 1 2.3270 -3.0363 -2.7054 26 1 1.3558 -4.5309 -2.6980 27 1 3.0519 -4.7841 -4.4132 28 1 4.3344 -4.2575 -3.2970 29 1 4.5473 -7.8665 -3.6282 30 1 5.3110 -5.9353 -1.6580 31 1 4.2299 -7.2446 -1.1139 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260815022.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:15:45 Heat of formation + Delta-G solvation = -29.332993 kcal Electronic energy + Delta-G solvation = -15091.634469 eV Core-core repulsion = 12565.301812 eV Total energy + Delta-G solvation = -2526.332656 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.21450 -38.87076 -35.88739 -35.58468 -33.61096 -31.34248 -30.59211 -27.93034 -25.52077 -24.58688 -22.75398 -21.56173 -19.85751 -18.59356 -18.30990 -17.48499 -16.76322 -16.49648 -15.84724 -15.54581 -14.93449 -14.56288 -14.44923 -14.21681 -13.68997 -13.47858 -13.14292 -13.03703 -12.72511 -12.64742 -12.51107 -12.03328 -11.76303 -11.63747 -11.06942 -10.89033 -10.61761 -10.38545 -9.04587 -8.23639 -6.38487 1.20449 1.38950 1.40689 1.49352 1.94207 2.18300 2.39620 2.99381 3.06491 3.40607 3.57302 3.65640 4.01308 4.19421 4.23773 4.39742 4.47974 4.58926 4.68871 4.72739 4.82726 4.88102 5.06148 5.22262 5.22687 5.66606 5.72413 5.85390 6.10252 6.41667 6.70580 6.86144 7.18016 7.30894 8.83763 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.038820 B = 0.007394 C = 0.006851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.111518 B = 3785.876412 C = 4086.002454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.015 3.985 3 Si 0.962 3.038 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.272 1.272 7 C -0.532 4.532 8 H 0.046 0.954 9 C 0.099 3.901 10 C 0.018 3.982 11 C -0.074 4.074 12 N -0.515 5.515 13 C 0.180 3.820 14 N -0.458 5.458 15 C 0.103 3.897 16 C -0.120 4.120 17 C 0.117 3.883 18 H 0.073 0.927 19 O -0.566 6.566 20 C -0.053 4.053 21 H 0.268 0.732 22 H 0.012 0.988 23 H 0.021 0.979 24 H 0.163 0.837 25 H 0.086 0.914 26 H 0.096 0.904 27 H 0.117 0.883 28 H 0.071 0.929 29 H 0.401 0.599 30 H 0.097 0.903 31 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.910 -11.675 -8.345 15.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.185 4.185 3 Si 0.787 3.213 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.197 1.197 7 C -0.570 4.570 8 H 0.065 0.935 9 C 0.061 3.939 10 C -0.098 4.098 11 C -0.220 4.220 12 N -0.235 5.235 13 C -0.082 4.082 14 N -0.142 5.142 15 C -0.018 4.018 16 C -0.158 4.158 17 C 0.057 3.943 18 H 0.091 0.909 19 O -0.375 6.375 20 C -0.092 4.092 21 H 0.077 0.923 22 H 0.031 0.969 23 H 0.039 0.961 24 H 0.180 0.820 25 H 0.104 0.896 26 H 0.115 0.885 27 H 0.136 0.864 28 H 0.090 0.910 29 H 0.252 0.748 30 H 0.115 0.885 31 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 6.182 -11.458 -8.288 15.434 hybrid contribution -0.429 1.211 0.343 1.330 sum 5.753 -10.247 -7.945 14.185 Atomic orbital electron populations 1.70032 1.07413 1.28259 1.50593 1.25794 0.95710 1.02684 0.94288 0.85545 0.78385 0.78405 0.79007 1.19404 1.20173 1.19703 1.21212 0.92726 0.91131 1.51929 0.93523 1.17489 0.91284 0.88281 0.96883 1.21802 1.02876 0.98161 0.86925 1.22071 1.01984 0.98862 0.99054 1.69861 1.23096 1.20933 1.09614 1.23656 0.97590 0.95889 0.91057 1.45373 1.34537 1.26504 1.07763 1.22056 1.00326 1.02886 0.76574 1.21788 0.98882 0.94352 1.00746 1.21605 0.93757 0.92717 0.86221 0.90865 1.86486 1.73053 1.29745 1.48230 1.21001 0.98904 0.97045 0.92241 0.92283 0.96948 0.96110 0.81962 0.89593 0.88547 0.86444 0.91016 0.74754 0.88508 0.86894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.82 13.29 21.45 0.28 -53.54 16 2 C 0.01 0.81 5.46 84.65 0.46 1.27 16 3 Si 0.96 43.65 29.54 68.60 2.03 45.68 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 5 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 6 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 7 C -0.53 -30.03 9.09 25.60 0.23 -29.80 16 8 H 0.05 2.67 7.74 -2.91 -0.02 2.65 16 9 C 0.10 5.21 5.34 29.10 0.16 5.37 16 10 C 0.02 0.86 6.17 41.08 0.25 1.11 16 11 C -0.07 -3.40 11.80 83.54 0.99 -2.42 16 12 N -0.52 -21.85 11.24 -187.50 -2.11 -23.95 16 13 C 0.18 6.51 7.65 138.23 1.06 7.56 16 14 N -0.46 -17.69 3.13 -499.37 -1.57 -19.26 16 15 C 0.10 3.13 6.60 86.47 0.57 3.70 16 16 C -0.12 -2.74 5.59 30.73 0.17 -2.56 16 17 C 0.12 2.30 3.49 30.77 0.11 2.41 16 18 H 0.07 1.34 8.12 -2.39 -0.02 1.32 16 19 O -0.57 -9.27 13.33 -148.98 -1.99 -11.25 16 20 C -0.05 -1.25 5.96 30.09 0.18 -1.07 16 21 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 22 H 0.01 0.66 7.91 -2.39 -0.02 0.64 16 23 H 0.02 1.16 8.14 -2.39 -0.02 1.15 16 24 H 0.16 7.13 8.06 -2.91 -0.02 7.11 16 25 H 0.09 2.91 8.14 -2.38 -0.02 2.89 16 26 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 27 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.07 1.78 8.12 -2.39 -0.02 1.76 16 29 H 0.40 2.83 9.09 -74.05 -0.67 2.16 16 30 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -69.32 265.20 1.29 -68.03 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: 0.46 Total: 8.72 kcal Atomic # 6 Polarization: -18.60 SS G_CDS: 4.18 Total: -14.43 kcal Atomic # 7 Polarization: -93.36 SS G_CDS: -3.39 Total: -96.75 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: -1.99 Total: -11.25 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -69.32 1.29 -68.03 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260815022.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.696 kcal (2) G-P(sol) polarization free energy of solvation -69.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds