Wall clock time and date at job start Thu Apr 9 2020 14:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00153 * 2 1 4 4 H 1.48511 * 109.47151 * 270.00488 * 3 2 1 5 5 H 1.48503 * 109.47205 * 30.00117 * 3 2 1 6 6 H 1.48497 * 109.47201 * 150.00724 * 3 2 1 7 7 C 1.37878 * 120.00077 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00063 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99887 * 359.97438 * 7 2 1 10 10 C 1.50702 * 109.47185 * 179.97438 * 9 7 2 11 11 C 1.34858 * 126.65118 * 84.97743 * 10 9 7 12 12 N 1.34289 * 108.06931 * 180.29445 * 11 10 9 13 13 C 1.30098 * 109.21014 * 359.61852 * 12 11 10 14 14 N 1.35420 * 108.62723 * 0.35141 * 13 12 11 15 15 C 1.46470 * 124.82398 * 179.87238 * 14 13 12 16 16 C 1.53264 * 108.79782 * 17.09541 * 15 14 13 17 17 C 1.53153 * 109.49783 * 309.63679 * 16 15 14 18 18 H 1.09000 * 109.51220 * 309.55578 * 17 16 15 19 19 O 1.42896 * 109.51050 * 189.46028 * 17 16 15 20 20 C 1.51045 * 127.38762 * 180.02562 * 13 12 11 21 21 H 0.97005 * 119.99723 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.47205 * 60.00142 * 9 7 2 23 23 H 1.08999 * 109.46845 * 300.00035 * 9 7 2 24 24 H 1.08002 * 125.96315 * 0.02562 * 11 10 9 25 25 H 1.08994 * 109.58898 * 136.88899 * 15 14 13 26 26 H 1.08998 * 109.57976 * 257.16802 * 15 14 13 27 27 H 1.08998 * 109.46490 * 69.64302 * 16 15 14 28 28 H 1.09002 * 109.46834 * 189.62962 * 16 15 14 29 29 H 0.96702 * 114.00264 * 180.02562 * 19 17 16 30 30 H 1.09007 * 109.71497 * 76.60199 * 20 13 12 31 31 H 1.08992 * 109.75416 * 315.97928 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4002 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2303 -3.6446 -0.0018 11 6 2.8263 -4.1955 1.0753 12 7 3.6296 -5.1829 0.6474 13 6 3.5482 -5.2698 -0.6481 14 7 2.6862 -4.3243 -1.0918 15 6 2.3344 -4.1064 -2.4968 16 6 2.7367 -5.3452 -3.3046 17 6 4.1896 -5.7121 -2.9881 18 1 4.8189 -4.8281 -3.0907 19 8 4.6349 -6.7228 -3.8948 20 6 4.2768 -6.2380 -1.5500 21 1 -0.4850 0.8401 0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6248 -2.5571 0.8897 24 1 2.6857 -3.8923 2.1023 25 1 1.2597 -3.9467 -2.5839 26 1 2.8654 -3.2329 -2.8751 27 1 2.0857 -6.1785 -3.0400 28 1 2.6395 -5.1321 -4.3691 29 1 5.5489 -7.0045 -3.7519 30 1 3.8087 -7.2206 -1.4891 31 1 5.3213 -6.3089 -1.2469 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260815024.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:15:46 Heat of formation + Delta-G solvation = -29.319923 kcal Electronic energy + Delta-G solvation = -15090.427179 eV Core-core repulsion = 12564.095090 eV Total energy + Delta-G solvation = -2526.332089 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.21722 -38.87318 -35.89035 -35.58364 -33.61271 -31.34324 -30.59413 -27.92785 -25.53489 -24.58796 -22.75268 -21.56009 -19.85538 -18.62449 -18.28484 -17.51358 -16.77184 -16.42917 -15.89706 -15.54244 -14.95356 -14.55787 -14.45912 -14.22791 -13.65212 -13.48675 -13.21913 -12.99268 -12.67718 -12.64783 -12.53207 -12.02863 -11.79546 -11.60568 -11.07199 -10.89263 -10.61938 -10.39038 -9.04615 -8.23504 -6.38277 1.20946 1.38152 1.40384 1.51474 1.93487 2.18230 2.39825 2.98663 3.06815 3.40085 3.57110 3.64813 4.02369 4.18704 4.25944 4.39074 4.44675 4.57695 4.69030 4.72379 4.83330 4.87995 5.05889 5.21167 5.23075 5.66897 5.72592 5.85276 6.10205 6.41410 6.70983 6.84612 7.17900 7.31132 8.84174 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.037337 B = 0.007420 C = 0.006923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.746423 B = 3772.778688 C = 4043.466670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.013 3.987 3 Si 0.963 3.037 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.271 1.271 7 C -0.530 4.530 8 H 0.048 0.952 9 C 0.098 3.902 10 C 0.018 3.982 11 C -0.074 4.074 12 N -0.515 5.515 13 C 0.180 3.820 14 N -0.457 5.457 15 C 0.104 3.896 16 C -0.118 4.118 17 C 0.115 3.885 18 H 0.066 0.934 19 O -0.565 6.565 20 C -0.052 4.052 21 H 0.268 0.732 22 H 0.012 0.988 23 H 0.020 0.980 24 H 0.163 0.837 25 H 0.091 0.909 26 H 0.087 0.913 27 H 0.079 0.921 28 H 0.116 0.884 29 H 0.401 0.599 30 H 0.102 0.898 31 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.762 -10.104 -8.574 15.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.186 4.186 3 Si 0.788 3.212 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.196 1.196 7 C -0.568 4.568 8 H 0.066 0.934 9 C 0.060 3.940 10 C -0.098 4.098 11 C -0.220 4.220 12 N -0.235 5.235 13 C -0.082 4.082 14 N -0.142 5.142 15 C -0.017 4.017 16 C -0.156 4.156 17 C 0.055 3.945 18 H 0.084 0.916 19 O -0.374 6.374 20 C -0.091 4.091 21 H 0.077 0.923 22 H 0.030 0.970 23 H 0.038 0.962 24 H 0.180 0.820 25 H 0.109 0.891 26 H 0.105 0.895 27 H 0.098 0.902 28 H 0.135 0.865 29 H 0.252 0.748 30 H 0.121 0.879 31 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 7.451 -10.392 -8.446 15.324 hybrid contribution -0.001 1.599 0.285 1.625 sum 7.450 -8.792 -8.161 14.121 Atomic orbital electron populations 1.70049 1.07460 1.28178 1.50716 1.25813 0.95712 1.02752 0.94312 0.85470 0.78509 0.78602 0.78630 1.19469 1.20271 1.19573 1.21237 0.92767 0.91045 1.51754 0.93395 1.17500 0.91297 0.88366 0.96834 1.21797 1.02825 0.98269 0.86889 1.22069 1.01990 0.98865 0.99049 1.69860 1.23260 1.20797 1.09569 1.23658 0.97447 0.95988 0.91115 1.45365 1.34377 1.26625 1.07783 1.22035 1.02754 1.00058 0.76891 1.21788 0.95781 0.96128 1.01861 1.21600 0.95471 0.90825 0.86637 0.91602 1.86474 1.36142 1.58202 1.56554 1.20983 1.00875 0.95708 0.91525 0.92315 0.96998 0.96178 0.81957 0.89057 0.89523 0.90232 0.86538 0.74798 0.87949 0.87255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.85 13.29 21.45 0.28 -53.57 16 2 C 0.01 0.74 5.46 84.65 0.46 1.20 16 3 Si 0.96 43.42 29.54 68.60 2.03 45.45 16 4 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 6 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 7 C -0.53 -29.79 9.09 25.60 0.23 -29.56 16 8 H 0.05 2.73 7.74 -2.91 -0.02 2.70 16 9 C 0.10 5.18 5.34 29.10 0.16 5.34 16 10 C 0.02 0.85 6.17 41.09 0.25 1.11 16 11 C -0.07 -3.40 11.80 83.54 0.99 -2.42 16 12 N -0.52 -21.84 11.24 -187.50 -2.11 -23.95 16 13 C 0.18 6.50 7.65 138.23 1.06 7.56 16 14 N -0.46 -17.69 3.13 -499.37 -1.57 -19.25 16 15 C 0.10 3.16 6.67 86.47 0.58 3.74 16 16 C -0.12 -2.60 5.59 30.73 0.17 -2.43 16 17 C 0.11 2.32 3.49 30.77 0.11 2.43 16 18 H 0.07 1.34 8.12 -2.39 -0.02 1.32 16 19 O -0.57 -9.32 13.33 -148.98 -1.99 -11.30 16 20 C -0.05 -1.23 5.96 30.08 0.18 -1.05 16 21 H 0.27 14.61 8.31 -92.70 -0.77 13.84 16 22 H 0.01 0.64 7.57 -2.39 -0.02 0.62 16 23 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.16 7.14 8.06 -2.91 -0.02 7.11 16 25 H 0.09 2.83 7.75 -2.39 -0.02 2.81 16 26 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 27 H 0.08 1.78 8.12 -2.39 -0.02 1.76 16 28 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.40 3.01 9.09 -74.06 -0.67 2.33 16 30 H 0.10 2.22 8.14 -2.38 -0.02 2.20 16 31 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -69.07 264.54 1.29 -67.78 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: 0.46 Total: 8.94 kcal Atomic # 6 Polarization: -18.28 SS G_CDS: 4.18 Total: -14.10 kcal Atomic # 7 Polarization: -93.38 SS G_CDS: -3.39 Total: -96.77 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: -1.99 Total: -11.30 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -69.07 1.29 -67.78 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260815024.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.460 kcal (2) G-P(sol) polarization free energy of solvation -69.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds