Wall clock time and date at job start Thu Apr 9 2020 14:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00169 * 2 1 4 4 H 1.48502 * 109.46930 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.46837 * 120.00092 * 3 2 1 6 6 H 1.48491 * 109.46967 * 240.00096 * 3 2 1 7 7 C 1.37880 * 119.99572 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00143 * 15.74881 * 7 2 1 9 9 C 1.50705 * 119.99614 * 195.74113 * 7 2 1 10 10 H 1.08997 * 109.46866 * 305.44720 * 9 7 2 11 11 N 1.46898 * 109.47048 * 65.45320 * 9 7 2 12 12 C 1.50700 * 109.46938 * 185.45074 * 9 7 2 13 13 O 1.34585 * 126.98508 * 284.69287 * 12 9 7 14 14 N 1.21512 * 111.65690 * 179.73970 * 13 12 9 15 15 C 1.29072 * 111.28780 * 0.38475 * 14 13 12 16 16 C 1.33888 * 126.98461 * 104.99683 * 12 9 7 17 17 C 1.50152 * 131.32472 * 0.39015 * 16 12 9 18 18 C 1.53568 * 108.01997 * 163.65949 * 17 16 12 19 19 C 1.53001 * 109.81793 * 50.11402 * 18 17 16 20 20 C 1.50624 * 130.42661 * 180.12164 * 15 14 13 21 21 H 0.97004 * 120.00013 * 174.88969 * 1 2 3 22 22 H 1.00895 * 110.99787 * 304.43312 * 11 9 7 23 23 H 1.00898 * 111.00002 * 68.39110 * 11 9 7 24 24 H 1.08998 * 109.75205 * 283.29133 * 17 16 12 25 25 H 1.09003 * 109.75699 * 44.03127 * 17 16 12 26 26 H 1.09000 * 109.41154 * 290.01294 * 18 17 16 27 27 H 1.08995 * 109.41821 * 170.22148 * 18 17 16 28 28 H 1.09005 * 109.38048 * 168.05807 * 19 18 17 29 29 H 1.09002 * 109.38156 * 48.39095 * 19 18 17 30 30 H 1.08998 * 109.74326 * 282.86127 * 20 15 14 31 31 H 1.09003 * 109.74219 * 43.52286 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1029 1.6963 -1.2125 7 6 2.0045 -1.1941 0.0005 8 1 1.4949 -2.1120 -0.2529 9 6 3.4692 -1.2184 0.3546 10 1 4.0093 -0.5207 -0.2853 11 7 3.6397 -0.8267 1.7601 12 6 4.0120 -2.6095 0.1515 13 8 3.8157 -3.6791 0.9446 14 7 4.3794 -4.6658 0.5144 15 6 5.0137 -4.4039 -0.5788 16 6 4.7922 -3.0312 -0.8515 17 6 5.3626 -2.3061 -2.0361 18 6 6.4963 -3.1637 -2.6173 19 6 6.0081 -4.5992 -2.8219 20 6 5.8431 -5.2962 -1.4646 21 1 -0.4850 -0.8367 -0.0748 22 1 3.2189 0.0728 1.9383 23 1 3.2658 -1.5300 2.3794 24 1 4.5870 -2.1620 -2.7883 25 1 5.7561 -1.3393 -1.7219 26 1 7.3408 -3.1629 -1.9282 27 1 6.8107 -2.7481 -3.5746 28 1 6.7344 -5.1459 -3.4234 29 1 5.0493 -4.5849 -3.3401 30 1 6.8215 -5.4575 -1.0122 31 1 5.3381 -6.2527 -1.6001 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260909404.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:15:54 Heat of formation + Delta-G solvation = 37.190668 kcal Electronic energy + Delta-G solvation = -15393.602296 eV Core-core repulsion = 12870.154323 eV Total energy + Delta-G solvation = -2523.447974 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -44.14906 -37.34268 -35.37794 -32.32063 -31.95548 -31.22371 -29.04407 -26.07199 -24.51793 -22.71235 -22.31221 -19.70923 -18.99450 -17.85563 -16.74401 -16.18937 -15.28611 -14.85455 -14.13959 -13.80570 -13.69904 -13.34108 -12.99335 -12.48893 -12.24817 -12.15014 -11.99550 -11.46954 -11.06609 -10.80706 -10.74815 -10.44391 -10.23594 -10.09953 -9.49102 -9.29656 -8.63470 -8.50884 -7.68025 -6.64849 -4.39593 2.29438 2.87680 3.22307 3.28552 3.44256 3.91972 4.25474 4.44040 4.84692 4.95482 5.03193 5.11362 5.45385 5.50009 5.54761 5.64872 5.74121 5.92299 5.94830 6.02309 6.12786 6.20008 6.37788 6.40540 6.46002 6.74664 6.88364 7.54023 8.03005 8.19199 8.36553 8.66104 8.95883 9.33609 10.67825 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.036356 B = 0.009196 C = 0.008357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.969826 B = 3043.911131 C = 3349.579987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.035 3.965 3 Si 1.044 2.956 4 H -0.280 1.280 5 H -0.269 1.269 6 H -0.278 1.278 7 C -0.634 4.634 8 H 0.059 0.941 9 C 0.257 3.743 10 H 0.066 0.934 11 N -0.857 5.857 12 C 0.058 3.942 13 O 0.076 5.924 14 N -0.376 5.376 15 C 0.017 3.983 16 C -0.238 4.238 17 C -0.036 4.036 18 C -0.116 4.116 19 C -0.115 4.115 20 C -0.035 4.035 21 H 0.271 0.729 22 H 0.338 0.662 23 H 0.332 0.668 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.601 -4.117 -4.483 13.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.173 4.173 3 Si 0.871 3.129 4 H -0.206 1.206 5 H -0.195 1.195 6 H -0.204 1.204 7 C -0.674 4.674 8 H 0.077 0.923 9 C 0.146 3.854 10 H 0.084 0.916 11 N -0.389 5.389 12 C -0.005 4.005 13 O 0.018 5.982 14 N -0.086 5.086 15 C -0.145 4.145 16 C -0.243 4.243 17 C -0.074 4.074 18 C -0.154 4.154 19 C -0.153 4.153 20 C -0.073 4.073 21 H 0.082 0.918 22 H 0.154 0.846 23 H 0.143 0.857 24 H 0.093 0.907 25 H 0.093 0.907 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 11.985 -3.565 -3.811 13.072 hybrid contribution -0.878 -1.313 -0.648 1.707 sum 11.107 -4.879 -4.459 12.925 Atomic orbital electron populations 1.70844 1.06751 1.31192 1.43428 1.25874 0.96269 1.02411 0.92703 0.84007 0.75481 0.75660 0.77786 1.20553 1.19522 1.20422 1.22538 0.93499 0.96793 1.54547 0.92299 1.17994 0.95468 0.82899 0.89040 0.91623 1.59809 1.65551 1.07852 1.05694 1.24165 0.94387 0.91974 0.89928 1.85022 1.55882 1.13416 1.43900 1.73451 1.12063 1.09306 1.13772 1.23177 1.01125 0.94971 0.95180 1.20420 1.07089 0.94668 1.02076 1.19816 0.96941 0.97285 0.93340 1.21594 0.98086 0.94897 1.00782 1.21567 1.01882 0.96014 0.95863 1.19966 0.97847 0.96372 0.93092 0.91829 0.84644 0.85698 0.90653 0.90717 0.91854 0.91440 0.91262 0.91481 0.90196 0.90397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.11 13.70 55.43 0.76 -25.35 16 2 C 0.04 0.95 5.35 -17.82 -0.10 0.86 16 3 Si 1.04 23.23 26.41 -169.99 -4.49 18.74 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 5 H -0.27 -5.44 5.77 56.52 0.33 -5.12 16 6 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 7 C -0.63 -17.21 9.05 -34.44 -0.31 -17.52 16 8 H 0.06 1.79 7.99 -52.49 -0.42 1.37 16 9 C 0.26 6.02 2.73 -70.02 -0.19 5.83 16 10 H 0.07 1.51 6.65 -51.93 -0.35 1.16 16 11 N -0.86 -18.79 9.26 -6.65 -0.06 -18.85 16 12 C 0.06 1.31 6.18 -35.84 -0.22 1.09 16 13 O 0.08 1.76 11.06 15.54 0.17 1.93 16 14 N -0.38 -8.09 12.06 32.97 0.40 -7.69 16 15 C 0.02 0.32 7.22 -82.47 -0.60 -0.27 16 16 C -0.24 -4.71 6.01 -105.10 -0.63 -5.34 16 17 C -0.04 -0.58 6.09 -27.85 -0.17 -0.75 16 18 C -0.12 -1.44 5.87 -26.44 -0.16 -1.59 16 19 C -0.12 -1.37 5.84 -26.49 -0.15 -1.53 16 20 C -0.03 -0.48 6.32 -27.68 -0.17 -0.66 16 21 H 0.27 8.04 8.73 -40.82 -0.36 7.69 16 22 H 0.34 7.33 5.56 -39.29 -0.22 7.11 16 23 H 0.33 7.17 8.78 -39.29 -0.35 6.82 16 24 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 25 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.06 0.77 8.11 -51.93 -0.42 0.35 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 30 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 255.90 15.07 3.86 3.86 Total: -1.00 -29.70 255.90 -6.00 -35.70 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -3.93 Total: 11.56 kcal Atomic # 6 Polarization: -17.19 SS G_CDS: -2.70 Total: -19.89 kcal Atomic # 7 Polarization: -52.98 SS G_CDS: 1.10 Total: -51.89 kcal Atomic # 8 Polarization: 1.76 SS G_CDS: 0.17 Total: 1.93 kcal Atomic # 14 Polarization: 23.23 SS G_CDS: -4.49 Total: 18.74 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -29.70 -6.00 -35.70 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260909404.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.888 kcal (2) G-P(sol) polarization free energy of solvation -29.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds