Wall clock time and date at job start Thu Apr 9 2020 14:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30737 * 125.88270 * 2 1 4 4 N 1.39993 * 108.21868 * 180.02562 * 3 2 1 5 5 C 1.46499 * 126.03175 * 180.26341 * 4 3 2 6 6 C 1.35217 * 107.93719 * 359.97438 * 4 3 2 7 7 C 1.35144 * 107.74691 * 0.02562 * 6 4 3 8 8 C 1.51361 * 110.24919 * 179.97438 * 7 6 4 9 9 O 1.42893 * 110.33464 * 257.95095 * 8 7 6 10 10 C 1.50698 * 110.33189 * 135.82042 * 8 7 6 11 11 H 1.08003 * 120.00209 * 1.05569 * 10 8 7 12 12 C 1.37885 * 120.00212 * 181.05901 * 10 8 7 13 13 N 1.31517 * 119.99401 * 6.07124 * 12 10 8 14 14 Si 1.86795 * 120.00057 * 186.07448 * 12 10 8 15 15 H 1.48501 * 109.47251 * 84.90109 * 14 12 10 16 16 H 1.48496 * 109.46872 * 204.89944 * 14 12 10 17 17 H 1.48501 * 109.47185 * 324.89962 * 14 12 10 18 18 C 1.54441 * 105.00448 * 16.94222 * 8 7 6 19 19 C 1.51327 * 141.95207 * 180.02562 * 6 4 3 20 20 H 1.09006 * 109.46586 * 270.00283 * 1 2 3 21 21 H 1.08996 * 109.46913 * 29.99371 * 1 2 3 22 22 H 1.08998 * 109.47298 * 150.00058 * 1 2 3 23 23 H 1.08999 * 109.46925 * 269.68265 * 5 4 3 24 24 H 1.08999 * 109.47426 * 29.68521 * 5 4 3 25 25 H 1.09002 * 109.46932 * 149.68484 * 5 4 3 26 26 H 0.96701 * 114.00096 * 174.33803 * 9 8 7 27 27 H 0.97001 * 119.99742 * 179.97438 * 13 12 10 28 28 H 1.08999 * 110.92906 * 92.44585 * 18 8 7 29 29 H 1.09006 * 110.92180 * 216.05922 * 18 8 7 30 30 H 1.08995 * 110.33723 * 281.93212 * 19 6 4 31 31 H 1.08997 * 110.33139 * 44.17130 * 19 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2733 1.0593 0.0000 4 7 3.6072 0.6345 -0.0006 5 6 4.7878 1.5018 0.0047 6 6 3.6137 -0.7177 -0.0004 7 6 2.3285 -1.1358 -0.0002 8 6 2.2696 -2.6482 -0.0006 9 8 1.9706 -3.1332 -1.3111 10 6 1.2368 -3.1323 0.9842 11 1 0.6560 -2.4201 1.5515 12 6 1.0333 -4.4845 1.1612 13 7 1.8196 -5.3517 0.5617 14 14 -0.3590 -5.0846 2.2523 15 1 -1.6164 -5.1410 1.4642 16 1 -0.0360 -6.4396 2.7666 17 1 -0.5316 -4.1501 3.3935 18 6 3.6801 -3.1034 0.4337 19 6 4.5520 -1.9049 -0.0002 20 1 -0.3633 0.0001 1.0277 21 1 -0.3633 0.8900 -0.5137 22 1 -0.3634 -0.8900 -0.5138 23 1 5.0850 1.7171 -1.0217 24 1 4.5516 2.4341 0.5177 25 1 5.6054 0.9996 0.5219 26 1 2.0052 -4.0962 -1.3914 27 1 1.6767 -6.3030 0.6864 28 1 3.7273 -3.2484 1.5130 29 1 3.9754 -4.0112 -0.0925 30 1 4.9526 -2.0713 -1.0002 31 1 5.3620 -1.7474 0.7119 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260922245.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:16:00 Heat of formation + Delta-G solvation = 12.275894 kcal Electronic energy + Delta-G solvation = -15631.069722 eV Core-core repulsion = 13106.541362 eV Total energy + Delta-G solvation = -2524.528359 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.41458 -38.44366 -34.95289 -34.49259 -34.06939 -30.34776 -29.10920 -28.89873 -26.26722 -24.97603 -22.18006 -20.40420 -20.21511 -18.79853 -17.44389 -16.84795 -16.53337 -15.77602 -15.40467 -14.72192 -14.37473 -14.26345 -13.94868 -13.88260 -13.30901 -13.24776 -13.05961 -12.86654 -12.75070 -12.60777 -12.38062 -12.24684 -11.83142 -11.47797 -11.12505 -10.57794 -9.97041 -9.86201 -9.08706 -8.11426 -6.23024 0.94391 1.43478 1.46086 1.53736 1.59148 1.87684 2.46034 3.14109 3.50487 3.80432 4.07722 4.20687 4.34930 4.42293 4.46101 4.58042 4.64093 4.72981 4.81867 4.93673 4.99784 5.06318 5.36693 5.40356 5.56582 5.65015 5.83539 5.96500 6.22278 6.38054 6.78838 6.85758 7.45992 7.54855 8.92827 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.034784 B = 0.010561 C = 0.009068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.768688 B = 2650.509700 C = 3087.083190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.079 3.921 3 N -0.324 5.324 4 N -0.368 5.368 5 C 0.096 3.904 6 C 0.044 3.956 7 C -0.243 4.243 8 C 0.304 3.696 9 O -0.597 6.597 10 C -0.544 4.544 11 H 0.045 0.955 12 C 0.032 3.968 13 N -0.911 5.911 14 Si 0.950 3.050 15 H -0.278 1.278 16 H -0.280 1.280 17 H -0.276 1.276 18 C -0.104 4.104 19 C -0.032 4.032 20 H 0.077 0.923 21 H 0.083 0.917 22 H 0.067 0.933 23 H 0.085 0.915 24 H 0.096 0.904 25 H 0.107 0.893 26 H 0.373 0.627 27 H 0.268 0.732 28 H 0.052 0.948 29 H 0.071 0.929 30 H 0.091 0.909 31 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.784 7.241 -0.169 9.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.085 4.085 3 N -0.147 5.147 4 N -0.150 5.150 5 C -0.044 4.044 6 C -0.084 4.084 7 C -0.254 4.254 8 C 0.264 3.736 9 O -0.405 6.405 10 C -0.582 4.582 11 H 0.063 0.937 12 C -0.168 4.168 13 N -0.551 5.551 14 Si 0.776 3.224 15 H -0.203 1.203 16 H -0.205 1.205 17 H -0.201 1.201 18 C -0.143 4.143 19 C -0.071 4.071 20 H 0.096 0.904 21 H 0.102 0.898 22 H 0.086 0.914 23 H 0.103 0.897 24 H 0.114 0.886 25 H 0.125 0.875 26 H 0.221 0.779 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.109 0.891 31 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 5.933 9.095 -0.308 10.864 hybrid contribution -0.815 -1.907 0.676 2.181 sum 5.118 7.189 0.369 8.832 Atomic orbital electron populations 1.20108 0.85911 1.02911 1.02964 1.22214 0.97884 0.89599 0.98829 1.77079 0.86717 1.22027 1.28921 1.48113 1.05659 1.02918 1.58359 1.22161 0.83000 0.94770 1.04421 1.22245 0.99374 0.85898 1.00912 1.21128 0.93089 0.96560 1.14577 1.17572 0.91769 0.83846 0.80413 1.86186 1.93860 1.26814 1.33631 1.21815 1.21360 0.91923 1.23081 0.93655 1.25577 0.97730 0.96734 0.96739 1.69807 1.37938 1.02238 1.45109 0.85709 0.80176 0.77411 0.79109 1.20333 1.20529 1.20108 1.22626 0.95549 0.95927 1.00157 1.20834 0.95637 0.87700 1.02962 0.90417 0.89835 0.91406 0.89680 0.88560 0.87493 0.77855 0.92300 0.92870 0.91067 0.89088 0.88521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.34 10.45 71.24 0.74 -1.59 16 2 C 0.08 3.57 7.22 43.19 0.31 3.88 16 3 N -0.32 -13.56 12.57 -47.24 -0.59 -14.16 16 4 N -0.37 -13.57 4.02 -355.26 -1.43 -15.00 16 5 C 0.10 2.20 11.47 127.77 1.47 3.67 16 6 C 0.04 1.81 7.58 41.52 0.31 2.12 16 7 C -0.24 -11.75 5.77 -19.90 -0.11 -11.86 16 8 C 0.30 15.62 0.90 -11.59 -0.01 15.61 16 9 O -0.60 -32.14 13.03 -148.98 -1.94 -34.08 16 10 C -0.54 -29.96 8.16 25.60 0.21 -29.75 16 11 H 0.05 2.56 7.77 -2.91 -0.02 2.54 16 12 C 0.03 1.71 5.27 84.66 0.45 2.16 16 13 N -0.91 -48.20 10.85 21.45 0.23 -47.96 16 14 Si 0.95 42.77 29.54 68.60 2.03 44.80 16 15 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 16 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 17 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 18 C -0.10 -4.68 5.35 31.57 0.17 -4.52 16 19 C -0.03 -1.16 6.79 30.53 0.21 -0.96 16 20 H 0.08 2.83 8.14 -2.38 -0.02 2.81 16 21 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 22 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 23 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 24 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 25 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.37 19.82 7.42 -74.06 -0.55 19.27 16 27 H 0.27 13.50 8.31 -92.71 -0.77 12.73 16 28 H 0.05 2.51 7.91 -2.39 -0.02 2.49 16 29 H 0.07 3.27 7.81 -2.38 -0.02 3.25 16 30 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 31 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 Total: -1.00 -65.41 264.63 2.62 -62.79 By element: Atomic # 1 Polarization: 24.27 SS G_CDS: 0.58 Total: 24.85 kcal Atomic # 6 Polarization: -24.98 SS G_CDS: 3.74 Total: -21.24 kcal Atomic # 7 Polarization: -75.33 SS G_CDS: -1.79 Total: -77.12 kcal Atomic # 8 Polarization: -32.14 SS G_CDS: -1.94 Total: -34.08 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -65.41 2.62 -62.79 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260922245.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.065 kcal (2) G-P(sol) polarization free energy of solvation -65.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds