Wall clock time and date at job start Thu Apr 9 2020 14:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47126 * 2 1 4 4 C 1.53004 * 109.47119 * 239.99970 * 2 1 3 5 5 N 1.46904 * 109.46850 * 60.00305 * 4 2 1 6 6 C 1.53006 * 109.46923 * 120.00238 * 2 1 3 7 7 C 1.50700 * 109.46608 * 300.00081 * 6 2 1 8 8 O 1.21273 * 120.00686 * 359.16367 * 7 6 2 9 9 N 1.34779 * 119.99286 * 179.16782 * 7 6 2 10 10 C 1.46506 * 119.99823 * 185.03436 * 9 7 6 11 11 C 1.53001 * 109.47114 * 184.20870 * 10 9 7 12 12 C 1.50697 * 115.54881 * 294.93752 * 11 10 9 13 13 H 1.08001 * 119.99839 * 115.10256 * 12 11 10 14 14 C 1.37880 * 119.99996 * 294.82325 * 12 11 10 15 15 N 1.31513 * 119.99757 * 175.07655 * 14 12 11 16 16 Si 1.86799 * 120.00026 * 355.07491 * 14 12 11 17 17 H 1.48504 * 109.46929 * 93.86916 * 16 14 12 18 18 H 1.48491 * 109.47179 * 213.86825 * 16 14 12 19 19 H 1.48498 * 109.47099 * 333.87376 * 16 14 12 20 20 C 1.52995 * 117.49528 * 80.61060 * 11 10 9 21 21 C 1.53004 * 117.49460 * 149.27055 * 11 10 9 22 22 H 1.08994 * 109.47006 * 299.99942 * 1 2 3 23 23 H 1.09002 * 109.46427 * 59.99936 * 1 2 3 24 24 H 1.09000 * 109.47350 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47346 * 179.97438 * 3 2 1 26 26 H 1.08994 * 109.47760 * 299.99979 * 3 2 1 27 27 H 1.09008 * 109.46965 * 60.00294 * 3 2 1 28 28 H 1.08999 * 109.46666 * 180.02562 * 4 2 1 29 29 H 1.09000 * 109.47252 * 300.00356 * 4 2 1 30 30 H 1.00896 * 111.00288 * 56.04578 * 5 4 2 31 31 H 1.00904 * 110.99361 * 179.97438 * 5 4 2 32 32 H 1.08992 * 109.47075 * 179.97438 * 6 2 1 33 33 H 1.09000 * 109.47085 * 59.99866 * 6 2 1 34 34 H 0.96998 * 120.00244 * 5.03258 * 9 7 6 35 35 H 1.09005 * 109.47057 * 64.20480 * 10 9 7 36 36 H 1.09003 * 109.46943 * 304.21004 * 10 9 7 37 37 H 0.96999 * 119.99916 * 179.97438 * 15 14 12 38 38 H 1.09004 * 117.49864 * 214.99869 * 20 11 10 39 39 H 1.08999 * 117.50521 * 0.02562 * 20 11 10 40 40 H 1.08995 * 117.49902 * 359.96922 * 21 11 10 41 41 H 1.08998 * 117.49579 * 144.97871 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2493 5 7 1.5504 -0.0287 -2.4487 6 6 2.0400 -0.7213 1.2493 7 6 1.5376 -0.0109 2.4797 8 8 0.8529 0.9839 2.3685 9 7 1.8493 -0.4812 3.7037 10 6 1.2717 0.1426 4.8969 11 6 1.8642 -0.5067 6.1493 12 6 1.5265 -1.9617 6.3488 13 1 2.3074 -2.7069 6.3148 14 6 0.2212 -2.3410 6.5803 15 7 -0.0889 -3.6167 6.6580 16 14 -1.1065 -1.0429 6.7838 17 1 -1.7594 -0.7930 5.4736 18 1 -2.1198 -1.5198 7.7589 19 1 -0.4957 0.2163 7.2805 20 6 3.2464 -0.0335 6.6037 21 6 2.0008 0.3647 7.3994 22 1 -0.3633 0.5138 0.8899 23 1 -0.3632 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 3.1300 1.4425 0.0005 26 1 1.6768 1.9564 -0.8899 27 1 1.6767 1.9563 0.8901 28 1 3.1301 -0.7216 -1.2490 29 1 1.6767 -1.7489 -1.2493 30 1 1.8198 0.9436 -2.4402 31 1 1.8743 -0.4860 -3.2878 32 1 3.1299 -0.7218 1.2491 33 1 1.6767 -1.7490 1.2492 34 1 2.4559 -1.2326 3.7946 35 1 0.1906 0.0036 4.8924 36 1 1.5011 1.2082 4.8970 37 1 -1.0071 -3.8835 6.8213 38 1 3.9115 -0.7746 7.0470 39 1 3.7335 0.7406 6.0108 40 1 1.6691 1.4006 7.3295 41 1 1.8461 -0.1144 8.3662 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721176708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:20:15 Heat of formation + Delta-G solvation = -25.040473 kcal Electronic energy + Delta-G solvation = -19640.810663 eV Core-core repulsion = 16748.965950 eV Total energy + Delta-G solvation = -2891.844714 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.174 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.80593 -37.58651 -36.59316 -33.42226 -32.38254 -32.20177 -28.50332 -27.00653 -26.37194 -25.29581 -24.45642 -21.66440 -19.97296 -19.32647 -18.59048 -16.82136 -16.52271 -15.88993 -15.33948 -15.13299 -14.82601 -14.60327 -14.20610 -13.67173 -13.43577 -13.16736 -12.94031 -12.57883 -12.35470 -12.24160 -11.99725 -11.54535 -11.10802 -11.07484 -10.86445 -10.68411 -10.64839 -10.59161 -10.52060 -10.26117 -9.59230 -9.19905 -9.06828 -8.79109 -8.75342 -8.50970 -8.24331 -6.19536 -4.22587 3.12808 3.27653 3.37765 3.43322 3.74815 4.37303 4.50578 4.80689 4.90666 4.94701 5.04403 5.17579 5.42603 5.47978 5.60831 5.64389 5.69062 5.70910 5.90774 5.95756 6.02132 6.11842 6.19840 6.23106 6.31139 6.41851 6.44607 6.52319 6.65008 6.69243 6.78108 6.93883 7.01839 7.06250 7.21341 7.30728 7.65313 8.20643 8.39026 8.80598 8.82963 9.44069 10.91448 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.027209 B = 0.005567 C = 0.005239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.823292 B = 5028.750327 C = 5342.861249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.043 4.043 3 C -0.155 4.155 4 C 0.070 3.930 5 N -0.847 5.847 6 C -0.135 4.135 7 C 0.508 3.492 8 O -0.549 6.549 9 N -0.703 5.703 10 C 0.154 3.846 11 C -0.018 4.018 12 C -0.490 4.490 13 H 0.078 0.922 14 C 0.084 3.916 15 N -0.893 5.893 16 Si 0.866 3.134 17 H -0.278 1.278 18 H -0.292 1.292 19 H -0.249 1.249 20 C -0.180 4.180 21 C -0.185 4.185 22 H 0.079 0.921 23 H 0.058 0.942 24 H 0.041 0.959 25 H 0.040 0.960 26 H 0.050 0.950 27 H 0.090 0.910 28 H 0.024 0.976 29 H 0.071 0.929 30 H 0.340 0.660 31 H 0.337 0.663 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.406 0.594 35 H 0.055 0.945 36 H 0.048 0.952 37 H 0.266 0.734 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.758 6.427 -12.426 15.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.044 4.044 3 C -0.212 4.212 4 C -0.060 4.060 5 N -0.378 5.378 6 C -0.175 4.175 7 C 0.295 3.705 8 O -0.429 6.429 9 N -0.352 5.352 10 C 0.030 3.970 11 C -0.019 4.019 12 C -0.527 4.527 13 H 0.096 0.904 14 C -0.120 4.120 15 N -0.529 5.529 16 Si 0.694 3.306 17 H -0.204 1.204 18 H -0.218 1.218 19 H -0.173 1.173 20 C -0.218 4.218 21 C -0.224 4.224 22 H 0.097 0.903 23 H 0.077 0.923 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.069 0.931 27 H 0.108 0.892 28 H 0.042 0.958 29 H 0.089 0.911 30 H 0.154 0.846 31 H 0.149 0.851 32 H 0.105 0.895 33 H 0.111 0.889 34 H 0.241 0.759 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.104 0.896 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.381 6.784 -12.176 14.610 hybrid contribution 0.533 0.184 0.034 0.565 sum 4.914 6.968 -12.142 14.837 Atomic orbital electron populations 1.21954 0.93323 1.01353 1.03344 1.20242 0.97340 0.95217 0.91577 1.22123 0.99288 0.96044 1.03752 1.21851 0.96098 0.98022 0.90070 1.58715 1.68018 1.06951 1.04089 1.21728 1.01971 1.00840 0.92992 1.20487 0.80570 0.84711 0.84744 1.90518 1.39701 1.26171 1.86530 1.45910 1.48309 1.35775 1.05237 1.21055 0.97200 0.94627 0.84080 1.19619 0.95946 0.95700 0.90630 1.20229 0.94361 0.88128 1.49988 0.90446 1.24908 0.98423 0.94971 0.93687 1.69887 1.19447 1.15211 1.48360 0.87028 0.81784 0.83557 0.78240 1.20409 1.21828 1.17264 1.22793 0.91411 1.02669 1.04885 1.23030 1.02743 0.98800 0.97792 0.90255 0.92275 0.93957 0.94129 0.93114 0.89185 0.95797 0.91069 0.84646 0.85137 0.89464 0.88853 0.75932 0.92647 0.93327 0.92448 0.89650 0.90956 0.91140 0.89317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 8.02 37.16 0.30 -1.80 16 2 C -0.04 -0.55 0.59 -154.50 -0.09 -0.64 16 3 C -0.15 -1.97 7.85 37.16 0.29 -1.68 16 4 C 0.07 0.74 5.75 -3.82 -0.02 0.72 16 5 N -0.85 -8.08 8.84 -10.36 -0.09 -8.17 16 6 C -0.13 -1.80 4.77 -27.88 -0.13 -1.93 16 7 C 0.51 8.88 7.24 -10.98 -0.08 8.80 16 8 O -0.55 -10.94 11.34 5.56 0.06 -10.88 16 9 N -0.70 -13.08 5.48 -60.29 -0.33 -13.41 16 10 C 0.15 3.25 5.14 -4.04 -0.02 3.23 16 11 C -0.02 -0.39 0.84 -155.66 -0.13 -0.52 16 12 C -0.49 -12.72 9.16 -34.44 -0.32 -13.03 16 13 H 0.08 2.18 8.06 -52.49 -0.42 1.75 16 14 C 0.08 2.30 5.47 -17.82 -0.10 2.20 16 15 N -0.89 -26.12 13.96 55.43 0.77 -25.35 16 16 Si 0.87 21.21 24.92 -169.99 -4.24 16.97 16 17 H -0.28 -6.95 7.04 56.52 0.40 -6.55 16 18 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 19 H -0.25 -5.74 5.76 56.52 0.33 -5.41 16 20 C -0.18 -3.43 9.96 -26.69 -0.27 -3.69 16 21 C -0.19 -3.76 8.09 -26.69 -0.22 -3.98 16 22 H 0.08 1.39 5.54 -51.93 -0.29 1.10 16 23 H 0.06 0.84 7.60 -51.93 -0.39 0.44 16 24 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.58 6.57 -51.93 -0.34 0.24 16 27 H 0.09 1.41 5.48 -51.92 -0.28 1.12 16 28 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.34 3.02 7.03 -39.29 -0.28 2.75 16 31 H 0.34 2.53 9.08 -39.29 -0.36 2.18 16 32 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.41 7.08 8.34 -40.82 -0.34 6.74 16 35 H 0.06 1.30 4.98 -51.93 -0.26 1.04 16 36 H 0.05 0.99 8.07 -51.93 -0.42 0.57 16 37 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 39 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.09 1.85 8.14 -51.93 -0.42 1.42 16 LS Contribution 317.79 15.07 4.79 4.79 Total: -1.00 -29.48 317.79 -6.64 -36.12 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: -6.82 Total: 12.26 kcal Atomic # 6 Polarization: -11.55 SS G_CDS: -0.78 Total: -12.33 kcal Atomic # 7 Polarization: -47.29 SS G_CDS: 0.35 Total: -46.93 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.06 Total: -10.88 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.24 Total: 16.97 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.48 -6.64 -36.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721176708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.082 kcal (2) G-P(sol) polarization free energy of solvation -29.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds