Wall clock time and date at job start Thu Apr 9 2020 14:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47126 * 2 1 4 4 C 1.53004 * 109.47119 * 239.99970 * 2 1 3 5 5 N 1.46904 * 109.46850 * 60.00305 * 4 2 1 6 6 C 1.53006 * 109.46923 * 120.00238 * 2 1 3 7 7 C 1.50700 * 109.46608 * 300.00081 * 6 2 1 8 8 O 1.21273 * 120.00686 * 359.16367 * 7 6 2 9 9 N 1.34779 * 119.99286 * 179.16782 * 7 6 2 10 10 C 1.46506 * 119.99823 * 185.03436 * 9 7 6 11 11 C 1.53001 * 109.47114 * 184.20870 * 10 9 7 12 12 C 1.50697 * 115.54881 * 294.93752 * 11 10 9 13 13 H 1.08001 * 119.99839 * 115.10256 * 12 11 10 14 14 C 1.37880 * 119.99996 * 294.82325 * 12 11 10 15 15 N 1.31513 * 119.99757 * 175.07655 * 14 12 11 16 16 Si 1.86799 * 120.00026 * 355.07491 * 14 12 11 17 17 H 1.48504 * 109.46929 * 93.86916 * 16 14 12 18 18 H 1.48491 * 109.47179 * 213.86825 * 16 14 12 19 19 H 1.48498 * 109.47099 * 333.87376 * 16 14 12 20 20 C 1.52995 * 117.49528 * 80.61060 * 11 10 9 21 21 C 1.53004 * 117.49460 * 149.27055 * 11 10 9 22 22 H 1.08994 * 109.47006 * 299.99942 * 1 2 3 23 23 H 1.09002 * 109.46427 * 59.99936 * 1 2 3 24 24 H 1.09000 * 109.47350 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47346 * 179.97438 * 3 2 1 26 26 H 1.08994 * 109.47760 * 299.99979 * 3 2 1 27 27 H 1.09008 * 109.46965 * 60.00294 * 3 2 1 28 28 H 1.08999 * 109.46666 * 180.02562 * 4 2 1 29 29 H 1.09000 * 109.47252 * 300.00356 * 4 2 1 30 30 H 1.00896 * 111.00288 * 56.04578 * 5 4 2 31 31 H 1.00904 * 110.99361 * 179.97438 * 5 4 2 32 32 H 1.08992 * 109.47075 * 179.97438 * 6 2 1 33 33 H 1.09000 * 109.47085 * 59.99866 * 6 2 1 34 34 H 0.96998 * 120.00244 * 5.03258 * 9 7 6 35 35 H 1.09005 * 109.47057 * 64.20480 * 10 9 7 36 36 H 1.09003 * 109.46943 * 304.21004 * 10 9 7 37 37 H 0.96999 * 119.99916 * 179.97438 * 15 14 12 38 38 H 1.09004 * 117.49864 * 214.99869 * 20 11 10 39 39 H 1.08999 * 117.50521 * 0.02562 * 20 11 10 40 40 H 1.08995 * 117.49902 * 359.96922 * 21 11 10 41 41 H 1.08998 * 117.49579 * 144.97871 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2493 5 7 1.5504 -0.0287 -2.4487 6 6 2.0400 -0.7213 1.2493 7 6 1.5376 -0.0109 2.4797 8 8 0.8529 0.9839 2.3685 9 7 1.8493 -0.4812 3.7037 10 6 1.2717 0.1426 4.8969 11 6 1.8642 -0.5067 6.1493 12 6 1.5265 -1.9617 6.3488 13 1 2.3074 -2.7069 6.3148 14 6 0.2212 -2.3410 6.5803 15 7 -0.0889 -3.6167 6.6580 16 14 -1.1065 -1.0429 6.7838 17 1 -1.7594 -0.7930 5.4736 18 1 -2.1198 -1.5198 7.7589 19 1 -0.4957 0.2163 7.2805 20 6 3.2464 -0.0335 6.6037 21 6 2.0008 0.3647 7.3994 22 1 -0.3633 0.5138 0.8899 23 1 -0.3632 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 3.1300 1.4425 0.0005 26 1 1.6768 1.9564 -0.8899 27 1 1.6767 1.9563 0.8901 28 1 3.1301 -0.7216 -1.2490 29 1 1.6767 -1.7489 -1.2493 30 1 1.8198 0.9436 -2.4402 31 1 1.8743 -0.4860 -3.2878 32 1 3.1299 -0.7218 1.2491 33 1 1.6767 -1.7490 1.2492 34 1 2.4559 -1.2326 3.7946 35 1 0.1906 0.0036 4.8924 36 1 1.5011 1.2082 4.8970 37 1 -1.0071 -3.8835 6.8213 38 1 3.9115 -0.7746 7.0470 39 1 3.7335 0.7406 6.0108 40 1 1.6691 1.4006 7.3295 41 1 1.8461 -0.1144 8.3662 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721176708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:20:15 Heat of formation + Delta-G solvation = -46.661635 kcal Electronic energy + Delta-G solvation = -19641.748227 eV Core-core repulsion = 16748.965950 eV Total energy + Delta-G solvation = -2892.782277 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.12775 -39.04261 -37.87945 -34.92499 -34.27297 -33.27990 -29.79491 -28.10684 -28.06634 -26.77097 -25.63051 -23.24819 -21.39308 -21.01696 -19.74490 -18.53329 -17.82553 -17.06576 -16.96860 -16.45163 -16.28950 -15.68281 -15.56994 -15.00694 -14.91210 -14.71800 -14.17544 -14.15147 -13.91217 -13.55472 -13.14977 -13.00236 -12.75799 -12.59432 -12.23139 -12.15163 -12.07182 -11.94010 -11.67496 -11.55081 -11.44792 -11.00290 -10.69999 -10.57806 -10.21012 -9.79450 -9.48279 -8.32056 -6.35499 1.30300 1.37147 1.46843 1.77263 2.33129 2.37620 3.00199 3.34791 3.69521 3.79682 3.93162 4.03173 4.10836 4.30233 4.33251 4.46795 4.52629 4.53888 4.62233 4.69959 4.79095 4.83150 4.90178 4.91322 4.99870 5.08211 5.17590 5.19906 5.27191 5.35716 5.49838 5.54402 5.56680 5.68772 5.78953 6.29307 6.31720 6.68190 6.69693 6.81227 7.33280 7.43348 8.82282 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.027209 B = 0.005567 C = 0.005239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.823292 B = 5028.750327 C = 5342.861249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.042 4.042 3 C -0.149 4.149 4 C 0.077 3.923 5 N -0.856 5.856 6 C -0.129 4.129 7 C 0.503 3.497 8 O -0.574 6.574 9 N -0.707 5.707 10 C 0.162 3.838 11 C -0.043 4.043 12 C -0.474 4.474 13 H 0.046 0.954 14 C 0.035 3.965 15 N -0.940 5.940 16 Si 0.915 3.085 17 H -0.290 1.290 18 H -0.296 1.296 19 H -0.225 1.225 20 C -0.153 4.153 21 C -0.184 4.184 22 H 0.047 0.953 23 H 0.061 0.939 24 H 0.038 0.962 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.042 0.958 29 H 0.070 0.930 30 H 0.344 0.656 31 H 0.350 0.650 32 H 0.117 0.883 33 H 0.100 0.900 34 H 0.410 0.590 35 H 0.027 0.973 36 H 0.059 0.941 37 H 0.264 0.736 38 H 0.086 0.914 39 H 0.099 0.901 40 H 0.091 0.909 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.332 7.796 -13.583 17.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.043 4.043 3 C -0.206 4.206 4 C -0.054 4.054 5 N -0.388 5.388 6 C -0.169 4.169 7 C 0.292 3.708 8 O -0.456 6.456 9 N -0.357 5.357 10 C 0.037 3.963 11 C -0.044 4.044 12 C -0.512 4.512 13 H 0.064 0.936 14 C -0.164 4.164 15 N -0.579 5.579 16 Si 0.741 3.259 17 H -0.217 1.217 18 H -0.223 1.223 19 H -0.147 1.147 20 C -0.190 4.190 21 C -0.222 4.222 22 H 0.066 0.934 23 H 0.080 0.920 24 H 0.057 0.943 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.060 0.940 29 H 0.089 0.911 30 H 0.158 0.842 31 H 0.163 0.837 32 H 0.135 0.865 33 H 0.119 0.881 34 H 0.246 0.754 35 H 0.045 0.955 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.104 0.896 39 H 0.118 0.882 40 H 0.109 0.891 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.983 8.170 -13.343 16.751 hybrid contribution 0.096 -0.240 0.356 0.440 sum 6.079 7.930 -12.987 16.386 Atomic orbital electron populations 1.21867 0.95206 1.00582 1.01820 1.20251 0.95744 0.95690 0.92595 1.22024 1.00238 0.95655 1.02715 1.21724 0.97020 0.97546 0.89072 1.58665 1.68384 1.07370 1.04393 1.21784 1.03715 1.00511 0.90921 1.21233 0.79849 0.84409 0.85349 1.90530 1.40650 1.27465 1.86913 1.45940 1.48579 1.36039 1.05138 1.20810 0.95576 0.95256 0.84626 1.19469 0.99196 0.93687 0.92021 1.20374 0.93116 0.89978 1.47700 0.93550 1.25536 1.00501 0.96131 0.94185 1.70002 1.19733 1.17029 1.51150 0.86259 0.79601 0.82649 0.77345 1.21730 1.22321 1.14692 1.22832 0.90192 1.02560 1.03433 1.23075 1.03408 0.99295 0.96443 0.93432 0.91988 0.94319 0.92457 0.92060 0.92278 0.93992 0.91116 0.84169 0.83674 0.86482 0.88136 0.75388 0.95472 0.92303 0.92685 0.89592 0.88220 0.89081 0.90106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.98 8.02 71.98 0.58 -3.40 16 2 C -0.04 -0.99 0.59 -52.18 -0.03 -1.02 16 3 C -0.15 -3.50 7.85 71.98 0.56 -2.93 16 4 C 0.08 1.39 5.75 86.30 0.50 1.89 16 5 N -0.86 -14.03 8.84 -186.71 -1.65 -15.67 16 6 C -0.13 -3.17 4.77 29.85 0.14 -3.03 16 7 C 0.50 17.05 7.24 87.66 0.63 17.68 16 8 O -0.57 -22.75 11.34 -3.01 -0.03 -22.78 16 9 N -0.71 -25.53 5.48 -463.04 -2.54 -28.06 16 10 C 0.16 6.63 5.14 86.38 0.44 7.07 16 11 C -0.04 -1.80 0.84 -52.93 -0.04 -1.84 16 12 C -0.47 -24.70 9.16 25.60 0.23 -24.47 16 13 H 0.05 2.66 8.06 -2.91 -0.02 2.63 16 14 C 0.04 1.96 5.47 84.66 0.46 2.42 16 15 N -0.94 -56.48 13.96 21.45 0.30 -56.18 16 16 Si 0.91 44.18 24.92 68.60 1.71 45.89 16 17 H -0.29 -14.50 7.04 99.48 0.70 -13.80 16 18 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 19 H -0.22 -9.81 5.76 99.48 0.57 -9.23 16 20 C -0.15 -5.36 9.96 30.62 0.30 -5.05 16 21 C -0.18 -6.97 8.09 30.62 0.25 -6.72 16 22 H 0.05 1.68 5.54 -2.39 -0.01 1.67 16 23 H 0.06 1.71 7.60 -2.39 -0.02 1.69 16 24 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.06 1.28 6.57 -2.39 -0.02 1.26 16 27 H 0.06 1.79 5.48 -2.38 -0.01 1.78 16 28 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.34 5.17 7.03 -89.70 -0.63 4.54 16 31 H 0.35 4.27 9.08 -89.69 -0.81 3.46 16 32 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 34 H 0.41 13.85 8.34 -92.71 -0.77 13.08 16 35 H 0.03 1.26 4.98 -2.38 -0.01 1.25 16 36 H 0.06 2.28 8.07 -2.39 -0.02 2.26 16 37 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 38 H 0.09 3.02 8.14 -2.38 -0.02 3.00 16 39 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 40 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 41 H 0.08 3.19 8.14 -2.39 -0.02 3.17 16 Total: -1.00 -64.56 317.79 0.51 -64.06 By element: Atomic # 1 Polarization: 33.47 SS G_CDS: -1.32 Total: 32.15 kcal Atomic # 6 Polarization: -23.43 SS G_CDS: 4.03 Total: -19.40 kcal Atomic # 7 Polarization: -96.03 SS G_CDS: -3.89 Total: -99.92 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: -0.03 Total: -22.78 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.71 Total: 45.89 kcal Total: -64.56 0.51 -64.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721176708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.394 kcal (2) G-P(sol) polarization free energy of solvation -64.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds