Wall clock time and date at job start Thu Apr 9 2020 14:23:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.46768 * 2 1 4 4 C 1.50696 * 109.47158 * 239.99771 * 2 1 3 5 5 H 1.08006 * 119.99384 * 239.99691 * 4 2 1 6 6 C 1.37870 * 120.00472 * 59.99781 * 4 2 1 7 7 N 1.31522 * 119.99648 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00393 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47103 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47221 * 119.99940 * 8 6 4 11 11 H 1.48504 * 109.46870 * 240.00300 * 8 6 4 12 12 N 1.46898 * 109.47087 * 119.99633 * 2 1 3 13 13 C 1.46903 * 110.99770 * 274.99999 * 12 2 1 14 14 C 1.52998 * 109.47162 * 179.97438 * 13 12 2 15 15 H 1.09003 * 109.47222 * 294.85093 * 14 13 12 16 16 C 1.53003 * 109.47383 * 174.84969 * 14 13 12 17 17 N 1.46902 * 109.47277 * 54.84645 * 14 13 12 18 18 C 1.46840 * 111.00411 * 192.22228 * 17 14 13 19 19 C 1.53037 * 109.52346 * 174.16385 * 18 17 14 20 20 C 1.53120 * 109.28042 * 59.17925 * 19 18 17 21 21 C 1.53001 * 109.57422 * 182.40839 * 20 19 18 22 22 C 1.53118 * 109.15927 * 302.34467 * 20 19 18 23 23 C 1.46854 * 110.99673 * 68.01418 * 17 14 13 24 24 H 1.09005 * 109.46683 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47519 * 299.99800 * 1 2 3 26 26 H 1.08999 * 109.47162 * 60.00992 * 1 2 3 27 27 H 0.97001 * 119.99659 * 179.97438 * 7 6 4 28 28 H 1.00894 * 111.00395 * 38.95229 * 12 2 1 29 29 H 1.09003 * 109.46979 * 60.00625 * 13 12 2 30 30 H 1.08995 * 109.47559 * 299.99905 * 13 12 2 31 31 H 1.09003 * 109.46966 * 180.02562 * 16 14 13 32 32 H 1.09007 * 109.46823 * 299.99782 * 16 14 13 33 33 H 1.08994 * 109.47304 * 59.99972 * 16 14 13 34 34 H 1.08999 * 109.46530 * 294.17774 * 18 17 14 35 35 H 1.09001 * 109.45972 * 54.14644 * 18 17 14 36 36 H 1.09000 * 109.50040 * 299.23899 * 19 18 17 37 37 H 1.09000 * 109.50185 * 179.12320 * 19 18 17 38 38 H 1.09000 * 109.52047 * 62.25361 * 20 19 18 39 39 H 1.09001 * 109.46770 * 179.71379 * 21 20 19 40 40 H 1.08995 * 109.47170 * 299.71683 * 21 20 19 41 41 H 1.08999 * 109.47025 * 59.71519 * 21 20 19 42 42 H 1.08991 * 109.50649 * 297.71324 * 22 20 19 43 43 H 1.08999 * 109.50104 * 177.59059 * 22 20 19 44 44 H 1.09000 * 109.45874 * 305.85807 * 23 17 14 45 45 H 1.08993 * 109.46563 * 65.82474 * 23 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6534 -1.5885 -1.1311 6 6 1.6993 -0.2396 -2.4827 7 7 0.9427 0.8294 -2.6034 8 14 2.3214 -1.1206 -4.0078 9 1 3.1466 -2.2873 -3.6036 10 1 1.1662 -1.5870 -4.8159 11 1 3.1467 -0.1877 -4.8164 12 7 2.0197 -0.6924 1.1995 13 6 2.0825 0.2228 2.3468 14 6 2.5950 -0.5328 3.5745 15 1 1.8723 -1.2980 3.8581 16 6 2.7825 0.4467 4.7348 17 7 3.8811 -1.1678 3.2571 18 6 4.2636 -2.1309 4.2974 19 6 5.5286 -2.8756 3.8648 20 6 6.6571 -1.8659 3.6379 21 6 7.9083 -2.5972 3.1473 22 6 6.2147 -0.8459 2.5852 23 6 4.9299 -0.1599 3.0551 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8901 27 1 0.7087 1.1610 -3.4845 28 1 1.4496 -1.4978 1.4102 29 1 1.0870 0.6165 2.5525 30 1 2.7588 1.0464 2.1182 31 1 3.1481 -0.0916 5.6093 32 1 3.5052 1.2119 4.4512 33 1 1.8282 0.9178 4.9704 34 1 4.4555 -1.6007 5.2303 35 1 3.4541 -2.8456 4.4459 36 1 5.3334 -3.4172 2.9392 37 1 5.8210 -3.5794 4.6441 38 1 6.8791 -1.3516 4.5730 39 1 8.7089 -1.8763 2.9815 40 1 8.2224 -3.3231 3.8972 41 1 7.6848 -3.1131 2.2135 42 1 6.0303 -1.3554 1.6396 43 1 6.9974 -0.0993 2.4505 44 1 4.6043 0.5569 2.3012 45 1 5.1186 0.3610 3.9937 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068614607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:23:45 Heat of formation + Delta-G solvation = -12.848974 kcal Electronic energy + Delta-G solvation = -20121.923677 eV Core-core repulsion = 17366.440721 eV Total energy + Delta-G solvation = -2755.482956 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.36182 -36.39464 -34.77393 -32.29705 -30.81445 -30.48237 -28.16271 -27.03793 -25.08323 -24.23439 -23.11625 -22.14640 -20.07368 -19.98959 -18.98292 -16.29191 -15.91452 -14.80824 -14.69255 -14.53455 -14.26049 -14.17242 -13.78128 -13.33546 -13.30857 -12.58693 -12.52416 -12.36480 -12.16875 -11.78306 -11.65866 -11.51695 -11.42269 -11.26149 -10.89622 -10.86119 -10.64465 -10.53458 -10.46040 -10.29114 -10.07739 -10.01389 -9.90782 -9.66105 -8.86057 -8.26912 -7.76311 -6.93667 -5.88693 -3.90396 3.37585 3.45065 3.51436 4.18923 4.52852 4.86885 4.92614 4.95612 5.07223 5.33411 5.39110 5.42997 5.47373 5.49233 5.57357 5.67029 5.76737 5.77555 5.79796 5.82898 5.97726 6.00630 6.03716 6.09595 6.15844 6.22927 6.25422 6.28551 6.38193 6.50588 6.54637 6.67128 6.78595 6.93784 7.21570 7.44879 7.55656 7.58899 7.84467 8.02824 8.42062 8.73860 8.80604 9.18931 9.74770 11.18556 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.019660 B = 0.005842 C = 0.004828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.860982 B = 4791.648581 C = 5798.573268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.210 3.790 3 H 0.029 0.971 4 C -0.484 4.484 5 H 0.063 0.937 6 C 0.052 3.948 7 N -0.901 5.901 8 Si 0.894 3.106 9 H -0.273 1.273 10 H -0.287 1.287 11 H -0.287 1.287 12 N -0.662 5.662 13 C 0.071 3.929 14 C 0.084 3.916 15 H 0.073 0.927 16 C -0.184 4.184 17 N -0.502 5.502 18 C 0.055 3.945 19 C -0.109 4.109 20 C -0.092 4.092 21 C -0.145 4.145 22 C -0.111 4.111 23 C 0.060 3.940 24 H 0.026 0.974 25 H 0.002 0.998 26 H 0.087 0.913 27 H 0.257 0.743 28 H 0.323 0.677 29 H 0.016 0.984 30 H 0.061 0.939 31 H 0.050 0.950 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.023 0.977 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.051 0.949 40 H 0.049 0.951 41 H 0.057 0.943 42 H 0.077 0.923 43 H 0.058 0.942 44 H 0.081 0.919 45 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.879 -3.486 14.869 17.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.102 3.898 3 H 0.047 0.953 4 C -0.523 4.523 5 H 0.082 0.918 6 C -0.148 4.148 7 N -0.542 5.542 8 Si 0.723 3.277 9 H -0.197 1.197 10 H -0.214 1.214 11 H -0.213 1.213 12 N -0.291 5.291 13 C -0.059 4.059 14 C -0.025 4.025 15 H 0.092 0.908 16 C -0.244 4.244 17 N -0.225 5.225 18 C -0.073 4.073 19 C -0.147 4.147 20 C -0.111 4.111 21 C -0.203 4.203 22 C -0.149 4.149 23 C -0.068 4.068 24 H 0.045 0.955 25 H 0.021 0.979 26 H 0.105 0.895 27 H 0.067 0.933 28 H 0.139 0.861 29 H 0.034 0.966 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.041 0.959 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.096 0.904 43 H 0.077 0.923 44 H 0.099 0.901 45 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 8.427 -3.557 14.106 16.812 hybrid contribution -0.690 0.246 0.137 0.745 sum 7.738 -3.311 14.244 16.544 Atomic orbital electron populations 1.22444 1.01143 0.99015 1.00230 1.19171 0.89221 0.94287 0.87108 0.95313 1.21231 1.29429 1.12136 0.89533 0.91842 1.24954 0.95543 0.95281 0.98986 1.69905 1.37812 1.23476 1.22970 0.86495 0.78449 0.79710 0.83061 1.19734 1.21364 1.21303 1.60634 1.57671 1.08235 1.02584 1.21900 0.97441 0.95672 0.90919 1.21761 0.91658 0.95285 0.93756 0.90843 1.22453 1.02186 1.00606 0.99150 1.61947 1.01616 1.16216 1.42743 1.22068 0.97447 0.95337 0.92449 1.21617 0.93959 0.97354 1.01785 1.21163 0.94855 0.96510 0.98534 1.21808 0.97244 1.00009 1.01193 1.21631 0.95994 0.97768 0.99463 1.22044 0.91456 0.94120 0.99144 0.95467 0.97872 0.89457 0.93340 0.86115 0.96559 0.92084 0.93059 0.92220 0.92367 0.95902 0.91358 0.90778 0.92412 0.92273 0.93019 0.93216 0.92419 0.90415 0.92305 0.90056 0.95935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.15 8.94 37.16 0.33 -3.82 16 2 C 0.21 5.36 2.57 -68.87 -0.18 5.18 16 3 H 0.03 0.81 7.80 -51.93 -0.40 0.41 16 4 C -0.48 -13.65 8.84 -34.44 -0.30 -13.95 16 5 H 0.06 1.83 7.81 -52.48 -0.41 1.42 16 6 C 0.05 1.47 5.30 -17.82 -0.09 1.37 16 7 N -0.90 -26.29 11.32 55.43 0.63 -25.67 16 8 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 9 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 N -0.66 -14.20 5.95 -107.95 -0.64 -14.84 16 13 C 0.07 1.28 4.71 -3.82 -0.02 1.26 16 14 C 0.08 1.24 2.54 -67.71 -0.17 1.07 16 15 H 0.07 1.06 7.94 -51.93 -0.41 0.65 16 16 C -0.18 -2.28 8.41 37.16 0.31 -1.96 16 17 N -0.50 -7.45 4.31 -226.69 -0.98 -8.43 16 18 C 0.06 0.69 5.17 -3.84 -0.02 0.67 16 19 C -0.11 -1.28 5.38 -26.65 -0.14 -1.43 16 20 C -0.09 -1.05 2.79 -90.50 -0.25 -1.30 16 21 C -0.15 -1.48 9.21 37.16 0.34 -1.14 16 22 C -0.11 -1.48 5.38 -26.65 -0.14 -1.62 16 23 C 0.06 0.87 4.49 -3.83 -0.02 0.85 16 24 H 0.03 0.64 8.13 -51.93 -0.42 0.21 16 25 H 0.00 0.05 7.45 -51.93 -0.39 -0.34 16 26 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 27 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 28 H 0.32 6.75 8.47 -39.29 -0.33 6.42 16 29 H 0.02 0.30 7.44 -51.93 -0.39 -0.09 16 30 H 0.06 1.15 6.65 -51.93 -0.35 0.81 16 31 H 0.05 0.58 6.90 -51.93 -0.36 0.22 16 32 H 0.06 0.75 6.45 -51.92 -0.33 0.41 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.02 0.27 6.95 -51.93 -0.36 -0.09 16 35 H 0.07 0.84 7.99 -51.93 -0.41 0.42 16 36 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.08 1.35 6.41 -51.93 -0.33 1.02 16 45 H 0.02 0.30 6.57 -51.93 -0.34 -0.04 16 LS Contribution 336.79 15.07 5.08 5.08 Total: -1.00 -28.48 336.79 -9.79 -38.27 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -8.50 Total: 3.45 kcal Atomic # 6 Polarization: -14.46 SS G_CDS: -0.36 Total: -14.81 kcal Atomic # 7 Polarization: -47.94 SS G_CDS: -0.99 Total: -48.94 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -28.48 -9.79 -38.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068614607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.421 kcal (2) G-P(sol) polarization free energy of solvation -28.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds