Wall clock time and date at job start Thu Apr 9 2020 14:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.46768 * 2 1 4 4 C 1.50696 * 109.47158 * 239.99771 * 2 1 3 5 5 H 1.08006 * 119.99384 * 239.99691 * 4 2 1 6 6 C 1.37870 * 120.00472 * 59.99781 * 4 2 1 7 7 N 1.31522 * 119.99648 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00393 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47103 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47221 * 119.99940 * 8 6 4 11 11 H 1.48504 * 109.46870 * 240.00300 * 8 6 4 12 12 N 1.46898 * 109.47087 * 119.99633 * 2 1 3 13 13 C 1.46903 * 110.99770 * 274.99999 * 12 2 1 14 14 C 1.52998 * 109.47162 * 179.97438 * 13 12 2 15 15 H 1.09003 * 109.47222 * 294.85093 * 14 13 12 16 16 C 1.53003 * 109.47383 * 174.84969 * 14 13 12 17 17 N 1.46902 * 109.47277 * 54.84645 * 14 13 12 18 18 C 1.46840 * 111.00411 * 192.22228 * 17 14 13 19 19 C 1.53037 * 109.52346 * 174.16385 * 18 17 14 20 20 C 1.53120 * 109.28042 * 59.17925 * 19 18 17 21 21 C 1.53001 * 109.57422 * 182.40839 * 20 19 18 22 22 C 1.53118 * 109.15927 * 302.34467 * 20 19 18 23 23 C 1.46854 * 110.99673 * 68.01418 * 17 14 13 24 24 H 1.09005 * 109.46683 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47519 * 299.99800 * 1 2 3 26 26 H 1.08999 * 109.47162 * 60.00992 * 1 2 3 27 27 H 0.97001 * 119.99659 * 179.97438 * 7 6 4 28 28 H 1.00894 * 111.00395 * 38.95229 * 12 2 1 29 29 H 1.09003 * 109.46979 * 60.00625 * 13 12 2 30 30 H 1.08995 * 109.47559 * 299.99905 * 13 12 2 31 31 H 1.09003 * 109.46966 * 180.02562 * 16 14 13 32 32 H 1.09007 * 109.46823 * 299.99782 * 16 14 13 33 33 H 1.08994 * 109.47304 * 59.99972 * 16 14 13 34 34 H 1.08999 * 109.46530 * 294.17774 * 18 17 14 35 35 H 1.09001 * 109.45972 * 54.14644 * 18 17 14 36 36 H 1.09000 * 109.50040 * 299.23899 * 19 18 17 37 37 H 1.09000 * 109.50185 * 179.12320 * 19 18 17 38 38 H 1.09000 * 109.52047 * 62.25361 * 20 19 18 39 39 H 1.09001 * 109.46770 * 179.71379 * 21 20 19 40 40 H 1.08995 * 109.47170 * 299.71683 * 21 20 19 41 41 H 1.08999 * 109.47025 * 59.71519 * 21 20 19 42 42 H 1.08991 * 109.50649 * 297.71324 * 22 20 19 43 43 H 1.08999 * 109.50104 * 177.59059 * 22 20 19 44 44 H 1.09000 * 109.45874 * 305.85807 * 23 17 14 45 45 H 1.08993 * 109.46563 * 65.82474 * 23 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6534 -1.5885 -1.1311 6 6 1.6993 -0.2396 -2.4827 7 7 0.9427 0.8294 -2.6034 8 14 2.3214 -1.1206 -4.0078 9 1 3.1466 -2.2873 -3.6036 10 1 1.1662 -1.5870 -4.8159 11 1 3.1467 -0.1877 -4.8164 12 7 2.0197 -0.6924 1.1995 13 6 2.0825 0.2228 2.3468 14 6 2.5950 -0.5328 3.5745 15 1 1.8723 -1.2980 3.8581 16 6 2.7825 0.4467 4.7348 17 7 3.8811 -1.1678 3.2571 18 6 4.2636 -2.1309 4.2974 19 6 5.5286 -2.8756 3.8648 20 6 6.6571 -1.8659 3.6379 21 6 7.9083 -2.5972 3.1473 22 6 6.2147 -0.8459 2.5852 23 6 4.9299 -0.1599 3.0551 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8901 27 1 0.7087 1.1610 -3.4845 28 1 1.4496 -1.4978 1.4102 29 1 1.0870 0.6165 2.5525 30 1 2.7588 1.0464 2.1182 31 1 3.1481 -0.0916 5.6093 32 1 3.5052 1.2119 4.4512 33 1 1.8282 0.9178 4.9704 34 1 4.4555 -1.6007 5.2303 35 1 3.4541 -2.8456 4.4459 36 1 5.3334 -3.4172 2.9392 37 1 5.8210 -3.5794 4.6441 38 1 6.8791 -1.3516 4.5730 39 1 8.7089 -1.8763 2.9815 40 1 8.2224 -3.3231 3.8972 41 1 7.6848 -3.1131 2.2135 42 1 6.0303 -1.3554 1.6396 43 1 6.9974 -0.0993 2.4505 44 1 4.6043 0.5569 2.3012 45 1 5.1186 0.3610 3.9937 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068614607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:23:44 Heat of formation + Delta-G solvation = -30.566618 kcal Electronic energy + Delta-G solvation = -20122.691972 eV Core-core repulsion = 17366.440721 eV Total energy + Delta-G solvation = -2756.251251 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.47060 -37.91322 -36.24011 -34.19362 -32.05960 -31.58832 -29.87424 -28.00371 -27.21033 -25.74305 -24.19681 -23.21898 -22.01387 -21.18401 -20.07047 -18.30023 -17.22605 -16.70779 -16.08389 -15.59459 -15.48237 -15.28846 -15.12339 -14.91019 -14.62273 -14.12084 -13.83969 -13.46530 -13.39104 -13.22974 -13.06861 -12.96405 -12.80714 -12.59581 -12.49360 -12.30458 -12.28082 -12.12139 -11.97282 -11.78859 -11.51952 -11.43260 -11.04676 -10.99334 -10.88478 -10.45691 -8.86879 -8.71451 -8.05793 -6.15774 1.41945 1.43537 1.56530 2.46556 3.08002 3.22136 3.70975 3.91436 3.97692 3.98518 4.10013 4.28952 4.44557 4.48339 4.52272 4.58223 4.64986 4.71647 4.74109 4.82272 4.85188 4.86811 4.89772 4.92661 4.95588 5.03063 5.09609 5.11795 5.16186 5.25336 5.30966 5.36392 5.38501 5.42465 5.47696 5.65419 5.73680 5.87930 6.32800 6.41277 6.48566 6.77296 6.96473 7.05795 7.54515 8.99802 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.019660 B = 0.005842 C = 0.004828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.860982 B = 4791.648581 C = 5798.573268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.216 3.784 3 H -0.006 1.006 4 C -0.504 4.504 5 H 0.051 0.949 6 C 0.006 3.994 7 N -0.926 5.926 8 Si 0.958 3.042 9 H -0.270 1.270 10 H -0.280 1.280 11 H -0.283 1.283 12 N -0.663 5.663 13 C 0.075 3.925 14 C 0.091 3.909 15 H 0.080 0.920 16 C -0.175 4.175 17 N -0.524 5.524 18 C 0.056 3.944 19 C -0.107 4.107 20 C -0.087 4.087 21 C -0.142 4.142 22 C -0.109 4.109 23 C 0.064 3.936 24 H 0.031 0.969 25 H 0.023 0.977 26 H 0.059 0.941 27 H 0.259 0.741 28 H 0.327 0.673 29 H 0.018 0.982 30 H 0.045 0.955 31 H 0.068 0.932 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.037 0.963 35 H 0.072 0.928 36 H 0.052 0.948 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.057 0.943 40 H 0.065 0.935 41 H 0.045 0.955 42 H 0.047 0.953 43 H 0.067 0.933 44 H 0.049 0.951 45 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.633 -4.456 16.460 19.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.107 3.893 3 H 0.012 0.988 4 C -0.542 4.542 5 H 0.070 0.930 6 C -0.191 4.191 7 N -0.567 5.567 8 Si 0.784 3.216 9 H -0.195 1.195 10 H -0.206 1.206 11 H -0.209 1.209 12 N -0.293 5.293 13 C -0.056 4.056 14 C -0.018 4.018 15 H 0.098 0.902 16 C -0.234 4.234 17 N -0.248 5.248 18 C -0.071 4.071 19 C -0.145 4.145 20 C -0.105 4.105 21 C -0.200 4.200 22 C -0.147 4.147 23 C -0.063 4.063 24 H 0.050 0.950 25 H 0.042 0.958 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.144 0.856 29 H 0.036 0.964 30 H 0.063 0.937 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.055 0.945 35 H 0.090 0.910 36 H 0.071 0.929 37 H 0.099 0.901 38 H 0.091 0.909 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.086 0.914 44 H 0.068 0.932 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 9.183 -4.533 15.717 18.759 hybrid contribution -0.924 0.574 -0.336 1.138 sum 8.259 -3.959 15.380 17.901 Atomic orbital electron populations 1.22241 1.00335 0.99077 0.99816 1.18919 0.89694 0.92392 0.88252 0.98763 1.21470 1.29650 1.12058 0.91055 0.93030 1.25703 0.95652 0.95950 1.01815 1.70028 1.38456 1.24483 1.23695 0.85508 0.78056 0.78614 0.79435 1.19456 1.20556 1.20854 1.60495 1.57313 1.08707 1.02735 1.21925 0.97317 0.95174 0.91140 1.21638 0.91811 0.95655 0.92682 0.90161 1.22347 1.02653 0.99969 0.98471 1.61887 1.01716 1.16778 1.44469 1.22114 0.97918 0.94887 0.92212 1.21610 0.93784 0.97556 1.01515 1.21131 0.95221 0.95969 0.98202 1.21778 0.96795 1.00316 1.01076 1.21604 0.95921 0.98360 0.98817 1.21943 0.91738 0.93766 0.98890 0.95009 0.95836 0.92195 0.93184 0.85625 0.96442 0.93650 0.91322 0.92662 0.91559 0.94452 0.90988 0.92886 0.90087 0.90939 0.92412 0.91584 0.93614 0.93447 0.91403 0.93198 0.94327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.69 8.94 71.98 0.64 -7.05 16 2 C 0.22 11.33 2.57 44.17 0.11 11.44 16 3 H -0.01 -0.33 7.80 -2.39 -0.02 -0.35 16 4 C -0.50 -28.97 8.84 25.60 0.23 -28.74 16 5 H 0.05 3.03 7.81 -2.91 -0.02 3.00 16 6 C 0.01 0.35 5.30 84.65 0.45 0.80 16 7 N -0.93 -54.86 11.32 21.45 0.24 -54.62 16 8 Si 0.96 45.44 29.54 68.60 2.03 47.47 16 9 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 10 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 11 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 12 N -0.66 -28.89 5.95 -495.45 -2.95 -31.84 16 13 C 0.07 2.70 4.71 86.30 0.41 3.10 16 14 C 0.09 2.56 2.54 44.92 0.11 2.67 16 15 H 0.08 2.16 7.94 -2.39 -0.02 2.14 16 16 C -0.18 -3.93 8.41 71.98 0.61 -3.32 16 17 N -0.52 -15.11 4.31 -871.11 -3.75 -18.86 16 18 C 0.06 1.29 5.17 86.33 0.45 1.73 16 19 C -0.11 -2.30 5.38 30.65 0.16 -2.13 16 20 C -0.09 -1.81 2.79 -10.71 -0.03 -1.84 16 21 C -0.14 -2.63 9.21 71.98 0.66 -1.97 16 22 C -0.11 -2.88 5.38 30.65 0.16 -2.72 16 23 C 0.06 1.84 4.49 86.32 0.39 2.23 16 24 H 0.03 1.49 8.13 -2.38 -0.02 1.47 16 25 H 0.02 1.02 7.45 -2.39 -0.02 1.00 16 26 H 0.06 3.32 6.07 -2.39 -0.01 3.30 16 27 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 28 H 0.33 13.69 8.47 -89.70 -0.76 12.93 16 29 H 0.02 0.63 7.44 -2.39 -0.02 0.61 16 30 H 0.05 1.77 6.65 -2.39 -0.02 1.76 16 31 H 0.07 1.33 6.90 -2.39 -0.02 1.31 16 32 H 0.05 1.29 6.45 -2.38 -0.02 1.28 16 33 H 0.07 1.38 8.14 -2.39 -0.02 1.37 16 34 H 0.04 0.76 6.95 -2.39 -0.02 0.75 16 35 H 0.07 1.59 7.99 -2.39 -0.02 1.58 16 36 H 0.05 1.36 8.14 -2.39 -0.02 1.35 16 37 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.07 1.62 8.14 -2.39 -0.02 1.61 16 44 H 0.05 1.72 6.41 -2.39 -0.02 1.70 16 45 H 0.04 0.97 6.57 -2.39 -0.02 0.95 16 Total: -1.00 -61.60 336.79 0.09 -61.51 By element: Atomic # 1 Polarization: 21.97 SS G_CDS: 0.17 Total: 22.14 kcal Atomic # 6 Polarization: -30.16 SS G_CDS: 4.35 Total: -25.80 kcal Atomic # 7 Polarization: -98.86 SS G_CDS: -6.46 Total: -105.32 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -61.60 0.09 -61.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068614607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.946 kcal (2) G-P(sol) polarization free energy of solvation -61.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds