Wall clock time and date at job start Thu Apr 9 2020 14:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46795 * 2 1 4 4 C 1.53001 * 109.47224 * 119.99872 * 2 1 3 5 5 H 1.08997 * 109.47042 * 185.00462 * 4 2 1 6 6 N 1.46907 * 109.47045 * 304.99910 * 4 2 1 7 7 C 1.52995 * 109.47099 * 65.00008 * 4 2 1 8 8 C 1.52997 * 109.47208 * 174.99780 * 7 4 2 9 9 N 1.46898 * 109.47622 * 180.02562 * 8 7 4 10 10 C 1.46902 * 110.99943 * 293.96076 * 9 8 7 11 11 C 1.46901 * 111.00607 * 169.99880 * 9 8 7 12 12 C 1.52993 * 109.47330 * 195.41110 * 11 9 8 13 13 C 1.50699 * 115.54932 * 54.04767 * 12 11 9 14 14 H 1.08001 * 120.00037 * 215.58667 * 13 12 11 15 15 C 1.37876 * 119.99799 * 35.31673 * 13 12 11 16 16 N 1.31509 * 120.00353 * 355.67079 * 15 13 12 17 17 Si 1.86808 * 119.99563 * 175.67216 * 15 13 12 18 18 H 1.48493 * 109.47346 * 90.00048 * 17 15 13 19 19 H 1.48502 * 109.46801 * 209.99830 * 17 15 13 20 20 H 1.48496 * 109.47365 * 329.99576 * 17 15 13 21 21 C 1.53002 * 117.49981 * 199.71639 * 12 11 9 22 22 C 1.53000 * 117.49812 * 268.37703 * 12 11 9 23 23 H 1.09002 * 109.47329 * 299.99600 * 1 2 3 24 24 H 1.08999 * 109.47197 * 60.00387 * 1 2 3 25 25 H 1.09003 * 109.46761 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47329 * 240.00400 * 2 1 3 27 27 H 1.08996 * 109.47243 * 179.97438 * 3 2 1 28 28 H 1.09003 * 109.47402 * 299.99699 * 3 2 1 29 29 H 1.09003 * 109.47373 * 60.00097 * 3 2 1 30 30 H 1.00895 * 111.00353 * 296.04783 * 6 4 2 31 31 H 1.00901 * 110.99785 * 60.00185 * 6 4 2 32 32 H 1.09004 * 109.46908 * 55.00384 * 7 4 2 33 33 H 1.09001 * 109.47286 * 295.00154 * 7 4 2 34 34 H 1.09005 * 109.47157 * 60.00214 * 8 7 4 35 35 H 1.09001 * 109.47302 * 300.00364 * 8 7 4 36 36 H 1.09001 * 109.46876 * 301.00884 * 10 9 8 37 37 H 1.08996 * 109.47286 * 61.01283 * 10 9 8 38 38 H 1.08997 * 109.46830 * 181.01434 * 10 9 8 39 39 H 1.09000 * 109.46554 * 75.40792 * 11 9 8 40 40 H 1.08994 * 109.46711 * 315.41913 * 11 9 8 41 41 H 0.97004 * 120.00133 * 185.00408 * 16 15 13 42 42 H 1.08991 * 117.50148 * 215.00374 * 21 12 11 43 43 H 1.09004 * 117.49448 * 0.02562 * 21 12 11 44 44 H 1.08993 * 117.49912 * 359.97438 * 22 12 11 45 45 H 1.09004 * 117.49673 * 144.98009 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 3.1263 -0.6442 1.2952 6 7 1.4543 -0.1019 2.4457 7 6 1.6353 -2.1954 1.1880 8 6 2.2503 -2.9428 2.3729 9 7 1.8623 -4.3583 2.3139 10 6 0.4155 -4.5164 2.5137 11 6 2.6187 -5.1529 3.2908 12 6 2.4850 -6.6390 2.9527 13 6 2.8612 -7.0215 1.5444 14 1 2.3179 -7.8026 1.0335 15 6 3.8956 -6.3705 0.9063 16 7 4.4979 -5.3594 1.4932 17 14 4.4414 -6.9246 -0.7922 18 1 3.6701 -6.1875 -1.8250 19 1 5.8899 -6.6447 -0.9624 20 1 4.1984 -8.3822 -0.9392 21 6 2.7886 -7.6464 4.0634 22 6 1.3438 -7.4142 3.6143 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 3.1299 1.4426 0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.7591 0.8549 2.5436 31 1 0.4472 -0.1604 2.4268 32 1 1.9950 -2.6325 0.2565 33 1 0.5492 -2.2761 1.2317 34 1 1.8907 -2.5057 3.3045 35 1 3.3365 -2.8621 2.3293 36 1 0.1352 -4.1021 3.4822 37 1 -0.1201 -3.9893 1.7242 38 1 0.1581 -5.5751 2.4832 39 1 2.2242 -4.9708 4.2905 40 1 3.6695 -4.8656 3.2571 41 1 5.1757 -4.8554 1.0162 42 1 3.2606 -8.5858 3.7757 43 1 3.0833 -7.2503 5.0353 44 1 0.6886 -6.8655 4.2908 45 1 0.8650 -8.2007 3.0309 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227736498.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:23:33 Heat of formation + Delta-G solvation = 20.672852 kcal Electronic energy + Delta-G solvation = -20205.204285 eV Core-core repulsion = 17451.174945 eV Total energy + Delta-G solvation = -2754.029340 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -38.36756 -37.18628 -34.82582 -31.91579 -31.73252 -29.60743 -27.33618 -26.43190 -25.50079 -24.94403 -22.34590 -21.05457 -19.86766 -19.21647 -18.68000 -16.06266 -15.95757 -15.27949 -14.68496 -14.59644 -14.37154 -13.88706 -13.78820 -13.44085 -13.23848 -12.73007 -12.42747 -12.18999 -11.96007 -11.49437 -11.42096 -11.27400 -10.99069 -10.88180 -10.82011 -10.78263 -10.54736 -10.45774 -10.32829 -10.29905 -9.84888 -9.75763 -9.21452 -8.69987 -8.52120 -8.44251 -7.97405 -6.83933 -5.71396 -3.80791 3.40014 3.46033 3.49650 4.55247 4.66613 4.79141 4.88900 4.97278 5.08774 5.35728 5.44549 5.56749 5.59337 5.68191 5.74308 5.79085 5.89079 5.96036 6.12357 6.18621 6.20160 6.23702 6.28009 6.34494 6.39169 6.52607 6.54988 6.72908 6.77450 6.82418 6.85133 7.01537 7.04650 7.05378 7.32961 7.37617 7.45733 7.59039 7.78051 8.17759 8.45383 8.52635 8.73589 9.13693 9.78559 11.23761 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.020250 B = 0.006298 C = 0.005312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.385251 B = 4445.108334 C = 5269.497409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.133 4.133 3 C -0.147 4.147 4 C 0.097 3.903 5 H 0.079 0.921 6 N -0.839 5.839 7 C -0.103 4.103 8 C 0.075 3.925 9 N -0.497 5.497 10 C 0.029 3.971 11 C 0.110 3.890 12 C 0.067 3.933 13 C -0.470 4.470 14 H 0.051 0.949 15 C 0.086 3.914 16 N -0.869 5.869 17 Si 0.887 3.113 18 H -0.282 1.282 19 H -0.290 1.290 20 H -0.278 1.278 21 C -0.212 4.212 22 C -0.218 4.218 23 H 0.050 0.950 24 H 0.051 0.949 25 H 0.062 0.938 26 H 0.074 0.926 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.332 0.668 31 H 0.335 0.665 32 H 0.070 0.930 33 H 0.054 0.946 34 H 0.022 0.978 35 H 0.071 0.929 36 H -0.001 1.001 37 H 0.046 0.954 38 H 0.068 0.932 39 H -0.023 1.023 40 H 0.117 0.883 41 H 0.254 0.746 42 H 0.075 0.925 43 H 0.061 0.939 44 H 0.062 0.938 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.721 11.762 -0.818 13.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C -0.205 4.205 4 C -0.015 4.015 5 H 0.097 0.903 6 N -0.368 5.368 7 C -0.141 4.141 8 C -0.053 4.053 9 N -0.219 5.219 10 C -0.120 4.120 11 C -0.017 4.017 12 C 0.066 3.934 13 C -0.507 4.507 14 H 0.069 0.931 15 C -0.116 4.116 16 N -0.507 5.507 17 Si 0.716 3.284 18 H -0.209 1.209 19 H -0.216 1.216 20 H -0.203 1.203 21 C -0.251 4.251 22 C -0.256 4.256 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.081 0.919 26 H 0.093 0.907 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.145 0.855 31 H 0.149 0.851 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.040 0.960 35 H 0.089 0.911 36 H 0.017 0.983 37 H 0.065 0.935 38 H 0.087 0.913 39 H -0.005 1.005 40 H 0.134 0.866 41 H 0.064 0.936 42 H 0.094 0.906 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.994 11.117 -0.882 12.220 hybrid contribution -0.522 0.665 -0.810 1.171 sum -5.517 11.782 -1.692 13.119 Atomic orbital electron populations 1.21877 0.95528 1.02235 1.01071 1.21922 0.96116 0.96465 1.00887 1.21847 1.01114 0.96273 1.01242 1.21514 0.99124 0.94364 0.86513 0.90285 1.58948 1.13761 1.22819 1.41312 1.21603 1.00098 0.92096 1.00326 1.21839 1.00232 0.88031 0.95228 1.61566 1.02214 1.06480 1.51624 1.22392 0.90985 1.01792 0.96808 1.21761 1.00570 0.92428 0.86943 1.19024 0.93321 0.88801 0.92258 1.20261 1.14665 1.18971 0.96816 0.93052 1.24745 0.95663 0.94525 0.96703 1.69801 1.26032 1.18983 1.35868 0.86689 0.77546 0.78848 0.85333 1.20871 1.21563 1.20334 1.22998 0.98087 1.03799 1.00215 1.22917 0.91162 1.05739 1.05748 0.93137 0.93037 0.91918 0.90713 0.92570 0.92949 0.93118 0.85482 0.85073 0.91166 0.92724 0.96033 0.91081 0.98300 0.93484 0.91286 1.00504 0.86588 0.93555 0.90620 0.92060 0.91979 0.91051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 8.49 37.16 0.32 -1.23 16 2 C -0.13 -1.49 2.74 -90.62 -0.25 -1.74 16 3 C -0.15 -1.40 8.96 37.16 0.33 -1.07 16 4 C 0.10 1.28 2.57 -67.71 -0.17 1.11 16 5 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 6 N -0.84 -10.03 8.50 -4.67 -0.04 -10.07 16 7 C -0.10 -1.69 4.41 -26.74 -0.12 -1.81 16 8 C 0.08 1.47 4.84 -3.83 -0.02 1.45 16 9 N -0.50 -11.07 4.06 -242.92 -0.99 -12.05 16 10 C 0.03 0.58 9.08 60.07 0.55 1.13 16 11 C 0.11 2.67 3.90 -3.83 -0.01 2.66 16 12 C 0.07 1.68 1.65 -155.66 -0.26 1.42 16 13 C -0.47 -12.89 8.74 -34.44 -0.30 -13.19 16 14 H 0.05 1.44 7.82 -52.49 -0.41 1.03 16 15 C 0.09 2.34 5.31 -17.82 -0.09 2.24 16 16 N -0.87 -23.49 10.10 55.43 0.56 -22.93 16 17 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 21 C -0.21 -4.96 9.96 -26.69 -0.27 -5.23 16 22 C -0.22 -4.92 8.36 -26.69 -0.22 -5.15 16 23 H 0.05 0.47 6.61 -51.93 -0.34 0.13 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.71 6.68 -51.93 -0.35 0.36 16 26 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.44 6.87 -51.93 -0.36 0.08 16 30 H 0.33 3.39 7.55 -39.29 -0.30 3.09 16 31 H 0.34 3.77 7.04 -39.29 -0.28 3.49 16 32 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 33 H 0.05 0.86 5.25 -51.93 -0.27 0.59 16 34 H 0.02 0.42 7.73 -51.93 -0.40 0.02 16 35 H 0.07 1.53 7.87 -51.93 -0.41 1.12 16 36 H 0.00 -0.03 8.14 -51.93 -0.42 -0.45 16 37 H 0.05 0.86 6.52 -51.93 -0.34 0.52 16 38 H 0.07 1.46 6.02 -51.93 -0.31 1.15 16 39 H -0.02 -0.55 8.00 -51.93 -0.42 -0.96 16 40 H 0.12 3.07 5.62 -51.93 -0.29 2.78 16 41 H 0.25 6.66 8.32 -40.82 -0.34 6.32 16 42 H 0.08 1.77 8.14 -51.93 -0.42 1.35 16 43 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 44 H 0.06 1.31 8.06 -51.93 -0.42 0.89 16 45 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 LS Contribution 339.90 15.07 5.12 5.12 Total: -1.00 -27.24 339.90 -9.14 -36.38 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -8.25 Total: 6.64 kcal Atomic # 6 Polarization: -18.88 SS G_CDS: -0.52 Total: -19.40 kcal Atomic # 7 Polarization: -44.59 SS G_CDS: -0.47 Total: -45.06 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -27.24 -9.14 -36.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227736498.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.051 kcal (2) G-P(sol) polarization free energy of solvation -27.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds