Wall clock time and date at job start Thu Apr 9 2020 14:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46795 * 2 1 4 4 C 1.53001 * 109.47224 * 119.99872 * 2 1 3 5 5 H 1.08997 * 109.47042 * 185.00462 * 4 2 1 6 6 N 1.46907 * 109.47045 * 304.99910 * 4 2 1 7 7 C 1.52995 * 109.47099 * 65.00008 * 4 2 1 8 8 C 1.52997 * 109.47208 * 174.99780 * 7 4 2 9 9 N 1.46898 * 109.47622 * 180.02562 * 8 7 4 10 10 C 1.46902 * 110.99943 * 293.96076 * 9 8 7 11 11 C 1.46901 * 111.00607 * 169.99880 * 9 8 7 12 12 C 1.52993 * 109.47330 * 195.41110 * 11 9 8 13 13 C 1.50699 * 115.54932 * 54.04767 * 12 11 9 14 14 H 1.08001 * 120.00037 * 215.58667 * 13 12 11 15 15 C 1.37876 * 119.99799 * 35.31673 * 13 12 11 16 16 N 1.31509 * 120.00353 * 355.67079 * 15 13 12 17 17 Si 1.86808 * 119.99563 * 175.67216 * 15 13 12 18 18 H 1.48493 * 109.47346 * 90.00048 * 17 15 13 19 19 H 1.48502 * 109.46801 * 209.99830 * 17 15 13 20 20 H 1.48496 * 109.47365 * 329.99576 * 17 15 13 21 21 C 1.53002 * 117.49981 * 199.71639 * 12 11 9 22 22 C 1.53000 * 117.49812 * 268.37703 * 12 11 9 23 23 H 1.09002 * 109.47329 * 299.99600 * 1 2 3 24 24 H 1.08999 * 109.47197 * 60.00387 * 1 2 3 25 25 H 1.09003 * 109.46761 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47329 * 240.00400 * 2 1 3 27 27 H 1.08996 * 109.47243 * 179.97438 * 3 2 1 28 28 H 1.09003 * 109.47402 * 299.99699 * 3 2 1 29 29 H 1.09003 * 109.47373 * 60.00097 * 3 2 1 30 30 H 1.00895 * 111.00353 * 296.04783 * 6 4 2 31 31 H 1.00901 * 110.99785 * 60.00185 * 6 4 2 32 32 H 1.09004 * 109.46908 * 55.00384 * 7 4 2 33 33 H 1.09001 * 109.47286 * 295.00154 * 7 4 2 34 34 H 1.09005 * 109.47157 * 60.00214 * 8 7 4 35 35 H 1.09001 * 109.47302 * 300.00364 * 8 7 4 36 36 H 1.09001 * 109.46876 * 301.00884 * 10 9 8 37 37 H 1.08996 * 109.47286 * 61.01283 * 10 9 8 38 38 H 1.08997 * 109.46830 * 181.01434 * 10 9 8 39 39 H 1.09000 * 109.46554 * 75.40792 * 11 9 8 40 40 H 1.08994 * 109.46711 * 315.41913 * 11 9 8 41 41 H 0.97004 * 120.00133 * 185.00408 * 16 15 13 42 42 H 1.08991 * 117.50148 * 215.00374 * 21 12 11 43 43 H 1.09004 * 117.49448 * 0.02562 * 21 12 11 44 44 H 1.08993 * 117.49912 * 359.97438 * 22 12 11 45 45 H 1.09004 * 117.49673 * 144.98009 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 3.1263 -0.6442 1.2952 6 7 1.4543 -0.1019 2.4457 7 6 1.6353 -2.1954 1.1880 8 6 2.2503 -2.9428 2.3729 9 7 1.8623 -4.3583 2.3139 10 6 0.4155 -4.5164 2.5137 11 6 2.6187 -5.1529 3.2908 12 6 2.4850 -6.6390 2.9527 13 6 2.8612 -7.0215 1.5444 14 1 2.3179 -7.8026 1.0335 15 6 3.8956 -6.3705 0.9063 16 7 4.4979 -5.3594 1.4932 17 14 4.4414 -6.9246 -0.7922 18 1 3.6701 -6.1875 -1.8250 19 1 5.8899 -6.6447 -0.9624 20 1 4.1984 -8.3822 -0.9392 21 6 2.7886 -7.6464 4.0634 22 6 1.3438 -7.4142 3.6143 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 3.1299 1.4426 0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.7591 0.8549 2.5436 31 1 0.4472 -0.1604 2.4268 32 1 1.9950 -2.6325 0.2565 33 1 0.5492 -2.2761 1.2317 34 1 1.8907 -2.5057 3.3045 35 1 3.3365 -2.8621 2.3293 36 1 0.1352 -4.1021 3.4822 37 1 -0.1201 -3.9893 1.7242 38 1 0.1581 -5.5751 2.4832 39 1 2.2242 -4.9708 4.2905 40 1 3.6695 -4.8656 3.2571 41 1 5.1757 -4.8554 1.0162 42 1 3.2606 -8.5858 3.7757 43 1 3.0833 -7.2503 5.0353 44 1 0.6886 -6.8655 4.2908 45 1 0.8650 -8.2007 3.0309 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227736498.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:23:33 Heat of formation + Delta-G solvation = 4.908693 kcal Electronic energy + Delta-G solvation = -20205.887870 eV Core-core repulsion = 17451.174945 eV Total energy + Delta-G solvation = -2754.712926 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.64920 -38.78874 -36.49264 -33.97063 -32.77982 -30.90108 -28.22346 -28.11062 -27.38181 -26.46293 -23.73969 -22.89928 -21.40439 -20.69848 -20.16234 -17.97592 -17.13209 -16.59569 -16.42196 -15.94892 -15.63911 -15.50685 -15.36134 -14.80293 -14.63978 -14.13685 -13.92768 -13.40637 -13.23713 -12.98702 -12.92397 -12.81277 -12.51499 -12.42551 -12.36318 -12.26299 -12.13275 -11.89486 -11.76863 -11.68010 -11.65229 -11.23039 -11.08483 -10.69005 -10.40545 -9.94984 -9.45171 -8.55509 -7.75750 -5.91828 1.46819 1.48968 1.56193 2.54697 3.14658 3.47227 3.74797 3.79218 3.96115 4.03434 4.08227 4.33220 4.40690 4.54452 4.55532 4.62126 4.67277 4.75928 4.76589 4.79003 4.81107 4.93274 4.93782 4.97033 5.01946 5.04404 5.07380 5.18081 5.22245 5.23677 5.36159 5.38934 5.47832 5.49429 5.55631 5.59363 5.75513 6.15016 6.36074 6.52434 6.72444 6.77179 6.87922 7.08578 7.68544 9.15849 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.020250 B = 0.006298 C = 0.005312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.385251 B = 4445.108334 C = 5269.497409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.129 4.129 3 C -0.143 4.143 4 C 0.106 3.894 5 H 0.064 0.936 6 N -0.843 5.843 7 C -0.091 4.091 8 C 0.085 3.915 9 N -0.516 5.516 10 C 0.035 3.965 11 C 0.122 3.878 12 C 0.037 3.963 13 C -0.489 4.489 14 H 0.037 0.963 15 C 0.050 3.950 16 N -0.879 5.879 17 Si 0.938 3.062 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.278 1.278 21 C -0.211 4.211 22 C -0.196 4.196 23 H 0.063 0.937 24 H 0.061 0.939 25 H 0.049 0.951 26 H 0.061 0.939 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.346 0.654 31 H 0.343 0.657 32 H 0.046 0.954 33 H 0.063 0.937 34 H 0.024 0.976 35 H 0.044 0.956 36 H 0.010 0.990 37 H 0.064 0.936 38 H 0.056 0.944 39 H -0.021 1.021 40 H 0.089 0.911 41 H 0.252 0.748 42 H 0.070 0.930 43 H 0.073 0.927 44 H 0.079 0.921 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.828 12.935 -0.925 14.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.150 4.150 3 C -0.201 4.201 4 C -0.006 4.006 5 H 0.082 0.918 6 N -0.375 5.375 7 C -0.130 4.130 8 C -0.043 4.043 9 N -0.239 5.239 10 C -0.114 4.114 11 C -0.006 4.006 12 C 0.036 3.964 13 C -0.527 4.527 14 H 0.055 0.945 15 C -0.151 4.151 16 N -0.517 5.517 17 Si 0.766 3.234 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.204 1.204 21 C -0.250 4.250 22 C -0.233 4.233 23 H 0.082 0.918 24 H 0.080 0.920 25 H 0.068 0.932 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.160 0.840 31 H 0.157 0.843 32 H 0.065 0.935 33 H 0.082 0.918 34 H 0.042 0.958 35 H 0.062 0.938 36 H 0.028 0.972 37 H 0.082 0.918 38 H 0.075 0.925 39 H -0.003 1.003 40 H 0.107 0.893 41 H 0.062 0.938 42 H 0.089 0.911 43 H 0.092 0.908 44 H 0.097 0.903 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.108 12.299 -0.984 13.768 hybrid contribution -0.184 0.283 -0.743 0.816 sum -6.292 12.582 -1.727 14.174 Atomic orbital electron populations 1.21851 0.94504 1.01782 1.02281 1.21840 0.96919 0.97244 0.98972 1.21808 1.00902 0.94980 1.02365 1.21279 0.98380 0.92669 0.88278 0.91760 1.58858 1.14296 1.23819 1.40535 1.21471 1.00184 0.93751 0.97572 1.21743 0.98748 0.87125 0.96678 1.61532 1.03387 1.07625 1.51349 1.22335 0.89670 1.01317 0.98038 1.21486 0.99338 0.92317 0.87454 1.19122 0.95739 0.89657 0.91846 1.20394 1.15074 1.19013 0.98171 0.94457 1.25280 0.95754 0.94707 0.99405 1.69944 1.25962 1.19220 1.36536 0.85887 0.77122 0.78265 0.82119 1.20817 1.21262 1.20366 1.23004 0.98859 1.03001 1.00141 1.22867 0.90745 1.04805 1.04900 0.91824 0.91961 0.93168 0.92096 0.92948 0.91939 0.91867 0.84006 0.84287 0.93526 0.91811 0.95834 0.93771 0.97197 0.91779 0.92535 1.00349 0.89280 0.93776 0.91120 0.90821 0.90275 0.90946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 8.49 71.98 0.61 -2.09 16 2 C -0.13 -2.71 2.74 -10.79 -0.03 -2.74 16 3 C -0.14 -2.41 8.96 71.98 0.64 -1.76 16 4 C 0.11 2.72 2.57 44.91 0.12 2.83 16 5 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 6 N -0.84 -18.61 8.50 -168.67 -1.43 -20.05 16 7 C -0.09 -2.97 4.41 30.59 0.13 -2.83 16 8 C 0.09 3.35 4.84 86.30 0.42 3.77 16 9 N -0.52 -22.99 4.06 -922.48 -3.74 -26.73 16 10 C 0.03 1.35 9.08 127.69 1.16 2.51 16 11 C 0.12 5.93 3.90 86.30 0.34 6.27 16 12 C 0.04 1.86 1.65 -52.93 -0.09 1.78 16 13 C -0.49 -27.04 8.74 25.60 0.22 -26.81 16 14 H 0.04 2.11 7.82 -2.91 -0.02 2.09 16 15 C 0.05 2.72 5.31 84.66 0.45 3.17 16 16 N -0.88 -48.25 10.10 21.45 0.22 -48.03 16 17 Si 0.94 44.12 29.54 68.60 2.03 46.14 16 18 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 19 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 20 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 21 C -0.21 -9.73 9.96 30.62 0.30 -9.43 16 22 C -0.20 -8.60 8.36 30.62 0.26 -8.34 16 23 H 0.06 1.00 6.61 -2.39 -0.02 0.99 16 24 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.05 1.05 6.68 -2.39 -0.02 1.03 16 26 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.06 0.91 6.87 -2.39 -0.02 0.89 16 30 H 0.35 6.23 7.55 -89.70 -0.68 5.55 16 31 H 0.34 6.83 7.04 -89.69 -0.63 6.20 16 32 H 0.05 1.72 8.14 -2.38 -0.02 1.71 16 33 H 0.06 1.94 5.25 -2.39 -0.01 1.93 16 34 H 0.02 0.91 7.73 -2.38 -0.02 0.90 16 35 H 0.04 1.96 7.87 -2.39 -0.02 1.94 16 36 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 37 H 0.06 2.23 6.52 -2.39 -0.02 2.22 16 38 H 0.06 2.32 6.02 -2.39 -0.01 2.31 16 39 H -0.02 -1.00 8.00 -2.39 -0.02 -1.02 16 40 H 0.09 4.83 5.62 -2.39 -0.01 4.81 16 41 H 0.25 13.45 8.32 -92.71 -0.77 12.68 16 42 H 0.07 3.28 8.14 -2.39 -0.02 3.26 16 43 H 0.07 3.17 8.14 -2.38 -0.02 3.15 16 44 H 0.08 3.18 8.06 -2.39 -0.02 3.16 16 45 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 Total: -1.00 -57.57 339.90 1.25 -56.32 By element: Atomic # 1 Polarization: 26.37 SS G_CDS: -0.36 Total: 26.02 kcal Atomic # 6 Polarization: -38.21 SS G_CDS: 4.54 Total: -33.67 kcal Atomic # 7 Polarization: -89.85 SS G_CDS: -4.96 Total: -94.81 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.14 kcal Total: -57.57 1.25 -56.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227736498.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.229 kcal (2) G-P(sol) polarization free energy of solvation -57.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds