Wall clock time and date at job start Thu Apr 9 2020 14:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47225 * 2 1 4 4 H 1.08992 * 109.47192 * 305.17947 * 3 2 1 5 5 C 1.50708 * 109.46878 * 185.18802 * 3 2 1 6 6 H 1.07996 * 119.99732 * 239.99985 * 5 3 2 7 7 C 1.37874 * 119.99880 * 59.99525 * 5 3 2 8 8 N 1.31509 * 120.00432 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99619 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47437 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47334 * 120.00548 * 9 7 5 12 12 H 1.48500 * 109.47067 * 240.00296 * 9 7 5 13 13 N 1.46898 * 109.47162 * 65.18731 * 3 2 1 14 14 C 1.46844 * 111.00178 * 42.67769 * 13 3 2 15 15 C 1.53037 * 109.52412 * 174.15732 * 14 13 3 16 16 H 1.08997 * 109.50642 * 299.24173 * 15 14 13 17 17 C 1.52995 * 109.50246 * 179.11512 * 15 14 13 18 18 N 1.46909 * 109.46878 * 65.20382 * 17 15 14 19 19 C 1.53122 * 109.27388 * 59.17805 * 15 14 13 20 20 H 1.09000 * 109.52207 * 182.43649 * 19 15 14 21 21 C 1.53008 * 109.57344 * 62.28333 * 19 15 14 22 22 C 1.53116 * 109.16380 * 302.34502 * 19 15 14 23 23 C 1.46840 * 110.99890 * 278.46387 * 13 3 2 24 24 H 1.09003 * 109.46322 * 65.82804 * 23 13 3 25 25 C 1.53002 * 109.46703 * 305.85907 * 23 13 3 26 26 H 1.09009 * 109.47161 * 279.19303 * 1 2 3 27 27 H 1.09002 * 109.46777 * 39.18572 * 1 2 3 28 28 H 1.08997 * 109.47796 * 159.19172 * 1 2 3 29 29 H 1.09002 * 109.46864 * 239.99641 * 2 1 3 30 30 H 1.09002 * 109.46782 * 120.00367 * 2 1 3 31 31 H 0.96999 * 120.00189 * 179.97438 * 8 7 5 32 32 H 1.08995 * 109.46169 * 294.17774 * 14 13 3 33 33 H 1.09006 * 109.46284 * 54.15138 * 14 13 3 34 34 H 1.09004 * 109.47263 * 185.19504 * 17 15 14 35 35 H 1.08995 * 109.47799 * 305.19988 * 17 15 14 36 36 H 1.00897 * 110.99763 * 56.04518 * 18 17 15 37 37 H 1.00897 * 110.99700 * 179.97438 * 18 17 15 38 38 H 1.08997 * 109.47219 * 300.15715 * 21 19 15 39 39 H 1.09003 * 109.47093 * 60.15773 * 21 19 15 40 40 H 1.09004 * 109.47017 * 180.15762 * 21 19 15 41 41 H 1.09001 * 109.50504 * 177.59596 * 22 19 15 42 42 H 1.09001 * 109.50140 * 297.71469 * 22 19 15 43 43 H 1.09000 * 109.46760 * 307.65189 * 25 23 13 44 44 H 1.09001 * 109.46888 * 67.64562 * 25 23 13 45 45 H 1.08999 * 109.47210 * 187.64802 * 25 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6030 1.9823 -0.8399 5 6 3.5416 1.4443 -0.1285 6 1 4.1493 1.8880 0.6462 7 6 4.1395 0.8795 -1.2350 8 7 3.3995 0.3396 -2.1786 9 14 6.0007 0.8812 -1.3939 10 1 6.5983 1.5441 -0.2070 11 1 6.4916 -0.5178 -1.4785 12 1 6.3920 1.6181 -2.6223 13 7 1.6553 2.0979 1.2571 14 6 1.8630 1.2026 2.4024 15 6 1.5917 1.9636 3.7022 16 1 2.2817 2.8035 3.7830 17 6 1.7869 1.0244 4.8941 18 7 3.1970 0.6199 4.9730 19 6 0.1517 2.4841 3.6919 20 1 -0.0326 3.0636 4.5966 21 6 -0.8198 1.3034 3.6343 22 6 -0.0520 3.3748 2.4633 23 6 0.2671 2.5730 1.1994 24 1 -0.4066 1.7187 1.1316 25 6 0.0841 3.4651 -0.0300 26 1 -0.3634 0.1642 1.0145 27 1 -0.3633 0.7966 -0.6493 28 1 -0.3634 -0.9606 -0.3650 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.8202 -0.0575 -2.9573 32 1 1.1820 0.3548 2.3289 33 1 2.8921 0.8430 2.4003 34 1 1.5048 1.5394 5.8125 35 1 1.1619 0.1406 4.7666 36 1 3.8018 1.4257 5.0269 37 1 3.3519 -0.0009 5.7532 38 1 -0.6348 0.7245 2.7295 39 1 -0.6725 0.6688 4.5082 40 1 -1.8441 1.6760 3.6243 41 1 -1.0873 3.7141 2.4273 42 1 0.6122 4.2369 2.5247 43 1 0.8482 4.2424 -0.0318 44 1 0.1771 2.8622 -0.9334 45 1 -0.9032 3.9261 -0.0008 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397299521.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:23:10 Heat of formation + Delta-G solvation = -1.084847 kcal Electronic energy + Delta-G solvation = -21337.110945 eV Core-core repulsion = 18582.138120 eV Total energy + Delta-G solvation = -2754.972825 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.70138 -36.02130 -34.08949 -32.25804 -31.30461 -30.45001 -27.65269 -26.68415 -26.29377 -23.78281 -22.99615 -22.04049 -20.07419 -19.17151 -17.85828 -16.18144 -15.99124 -14.97807 -14.75721 -14.54009 -14.46218 -13.88903 -13.83905 -13.27393 -13.09528 -12.43556 -12.29196 -12.02539 -11.70240 -11.63079 -11.28603 -11.26609 -11.07834 -10.98201 -10.95514 -10.71226 -10.62106 -10.26279 -10.19905 -9.99038 -9.91134 -9.58938 -9.40242 -9.18164 -8.71264 -8.41137 -8.17488 -6.79345 -5.88423 -3.89860 3.37736 3.45486 3.51197 4.52119 4.71527 4.91924 5.14833 5.24106 5.36483 5.41586 5.45223 5.67891 5.75379 5.80845 5.83163 5.94648 6.00957 6.09990 6.16646 6.24101 6.26567 6.29133 6.35946 6.39609 6.46783 6.53906 6.54540 6.72819 6.76998 6.86275 6.92863 7.05397 7.08550 7.20155 7.33863 7.42572 7.61403 7.69557 7.87638 8.01968 8.39417 8.59626 8.79754 9.18014 9.74289 11.18043 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.019817 B = 0.008338 C = 0.006932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.624136 B = 3357.148603 C = 4038.327009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.154 4.154 3 C 0.212 3.788 4 H 0.046 0.954 5 C -0.486 4.486 6 H 0.061 0.939 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.287 1.287 13 N -0.525 5.525 14 C 0.079 3.921 15 C -0.081 4.081 16 H 0.070 0.930 17 C 0.069 3.931 18 N -0.845 5.845 19 C -0.084 4.084 20 H 0.057 0.943 21 C -0.155 4.155 22 C -0.104 4.104 23 C 0.061 3.939 24 H 0.053 0.947 25 C -0.144 4.144 26 H 0.041 0.959 27 H 0.046 0.954 28 H 0.030 0.970 29 H 0.096 0.904 30 H 0.040 0.960 31 H 0.257 0.743 32 H 0.026 0.974 33 H 0.086 0.914 34 H 0.017 0.983 35 H 0.069 0.931 36 H 0.340 0.660 37 H 0.334 0.666 38 H 0.065 0.935 39 H 0.050 0.950 40 H 0.047 0.953 41 H 0.053 0.947 42 H 0.063 0.937 43 H 0.059 0.941 44 H 0.061 0.939 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.979 2.412 11.385 13.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.193 4.193 3 C 0.106 3.894 4 H 0.064 0.936 5 C -0.525 4.525 6 H 0.079 0.921 7 C -0.145 4.145 8 N -0.538 5.538 9 Si 0.721 3.279 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.214 1.214 13 N -0.250 5.250 14 C -0.049 4.049 15 C -0.100 4.100 16 H 0.088 0.912 17 C -0.062 4.062 18 N -0.374 5.374 19 C -0.103 4.103 20 H 0.076 0.924 21 C -0.212 4.212 22 C -0.142 4.142 23 C -0.047 4.047 24 H 0.070 0.930 25 C -0.201 4.201 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.049 0.951 29 H 0.114 0.886 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.044 0.956 33 H 0.104 0.896 34 H 0.035 0.965 35 H 0.088 0.912 36 H 0.152 0.848 37 H 0.146 0.854 38 H 0.084 0.916 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.082 0.918 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -6.777 2.417 10.545 12.766 hybrid contribution 0.446 -0.309 0.678 0.869 sum -6.331 2.108 11.223 13.057 Atomic orbital electron populations 1.22212 0.99886 0.99616 0.99282 1.22259 0.91348 1.02690 1.03001 1.19449 0.95357 0.88465 0.86098 0.93624 1.21211 0.91216 1.35418 1.04633 0.92073 1.24910 0.97840 0.95792 0.95955 1.69886 1.34444 1.39804 1.09635 0.86529 0.86201 0.77389 0.77802 1.19804 1.21376 1.21361 1.62232 1.18123 1.39850 1.04752 1.21887 1.02033 0.92814 0.88168 1.21266 0.95621 0.97836 0.95312 0.91186 1.21869 0.89551 0.98595 0.96202 1.58627 1.05728 1.22254 1.50798 1.21112 0.95016 0.96311 0.97896 0.92447 1.22052 0.98405 0.98526 1.02167 1.21641 0.99891 0.98307 0.94361 1.21913 0.92239 0.96914 0.93658 0.93003 1.21903 0.99849 1.00091 0.98303 0.94039 0.93490 0.95067 0.88614 0.94166 0.93321 0.95570 0.89558 0.96509 0.91238 0.84752 0.85429 0.91586 0.93147 0.93389 0.92859 0.91807 0.92186 0.91987 0.94009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.07 8.15 37.16 0.30 -2.77 16 2 C -0.15 -3.65 4.72 -26.73 -0.13 -3.77 16 3 C 0.21 5.21 1.71 -68.86 -0.12 5.10 16 4 H 0.05 1.22 5.25 -51.93 -0.27 0.95 16 5 C -0.49 -13.36 8.13 -34.44 -0.28 -13.64 16 6 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 7 C 0.05 1.52 5.29 -17.82 -0.09 1.43 16 8 N -0.90 -25.64 11.29 55.43 0.63 -25.02 16 9 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 10 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 N -0.53 -11.01 4.35 -220.15 -0.96 -11.96 16 14 C 0.08 1.53 3.04 -3.84 -0.01 1.52 16 15 C -0.08 -1.26 2.27 -90.54 -0.21 -1.47 16 16 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 17 C 0.07 0.92 5.60 -3.82 -0.02 0.90 16 18 N -0.85 -11.13 9.11 -10.37 -0.09 -11.23 16 19 C -0.08 -1.18 2.77 -90.49 -0.25 -1.43 16 20 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 21 C -0.15 -2.06 8.20 37.16 0.30 -1.75 16 22 C -0.10 -1.59 4.87 -26.65 -0.13 -1.71 16 23 C 0.06 1.10 1.53 -67.72 -0.10 1.00 16 24 H 0.05 0.95 3.00 -51.93 -0.16 0.79 16 25 C -0.14 -2.57 8.44 37.16 0.31 -2.26 16 26 H 0.04 0.77 3.64 -51.92 -0.19 0.58 16 27 H 0.05 0.94 6.37 -51.93 -0.33 0.61 16 28 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.10 2.58 5.95 -51.93 -0.31 2.27 16 30 H 0.04 0.96 6.13 -51.93 -0.32 0.64 16 31 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 32 H 0.03 0.52 3.97 -51.93 -0.21 0.31 16 33 H 0.09 1.93 7.22 -51.93 -0.37 1.56 16 34 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 35 H 0.07 0.95 6.69 -51.93 -0.35 0.60 16 36 H 0.34 4.24 8.99 -39.29 -0.35 3.89 16 37 H 0.33 3.59 9.08 -39.29 -0.36 3.23 16 38 H 0.07 1.01 3.46 -51.93 -0.18 0.83 16 39 H 0.05 0.61 6.52 -51.93 -0.34 0.27 16 40 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.06 1.22 5.52 -51.93 -0.29 0.93 16 45 H 0.04 0.63 8.13 -51.93 -0.42 0.20 16 LS Contribution 311.52 15.07 4.69 4.69 Total: -1.00 -28.10 311.52 -8.54 -36.64 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -7.37 Total: 8.98 kcal Atomic # 6 Polarization: -18.45 SS G_CDS: -0.42 Total: -18.87 kcal Atomic # 7 Polarization: -47.78 SS G_CDS: -0.42 Total: -48.21 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.10 -8.54 -36.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397299521.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.553 kcal (2) G-P(sol) polarization free energy of solvation -28.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds