Wall clock time and date at job start Thu Apr 9 2020 14:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47225 * 2 1 4 4 H 1.08992 * 109.47192 * 305.17947 * 3 2 1 5 5 C 1.50708 * 109.46878 * 185.18802 * 3 2 1 6 6 H 1.07996 * 119.99732 * 239.99985 * 5 3 2 7 7 C 1.37874 * 119.99880 * 59.99525 * 5 3 2 8 8 N 1.31509 * 120.00432 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99619 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47437 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47334 * 120.00548 * 9 7 5 12 12 H 1.48500 * 109.47067 * 240.00296 * 9 7 5 13 13 N 1.46898 * 109.47162 * 65.18731 * 3 2 1 14 14 C 1.46844 * 111.00178 * 42.67769 * 13 3 2 15 15 C 1.53037 * 109.52412 * 174.15732 * 14 13 3 16 16 H 1.08997 * 109.50642 * 299.24173 * 15 14 13 17 17 C 1.52995 * 109.50246 * 179.11512 * 15 14 13 18 18 N 1.46909 * 109.46878 * 65.20382 * 17 15 14 19 19 C 1.53122 * 109.27388 * 59.17805 * 15 14 13 20 20 H 1.09000 * 109.52207 * 182.43649 * 19 15 14 21 21 C 1.53008 * 109.57344 * 62.28333 * 19 15 14 22 22 C 1.53116 * 109.16380 * 302.34502 * 19 15 14 23 23 C 1.46840 * 110.99890 * 278.46387 * 13 3 2 24 24 H 1.09003 * 109.46322 * 65.82804 * 23 13 3 25 25 C 1.53002 * 109.46703 * 305.85907 * 23 13 3 26 26 H 1.09009 * 109.47161 * 279.19303 * 1 2 3 27 27 H 1.09002 * 109.46777 * 39.18572 * 1 2 3 28 28 H 1.08997 * 109.47796 * 159.19172 * 1 2 3 29 29 H 1.09002 * 109.46864 * 239.99641 * 2 1 3 30 30 H 1.09002 * 109.46782 * 120.00367 * 2 1 3 31 31 H 0.96999 * 120.00189 * 179.97438 * 8 7 5 32 32 H 1.08995 * 109.46169 * 294.17774 * 14 13 3 33 33 H 1.09006 * 109.46284 * 54.15138 * 14 13 3 34 34 H 1.09004 * 109.47263 * 185.19504 * 17 15 14 35 35 H 1.08995 * 109.47799 * 305.19988 * 17 15 14 36 36 H 1.00897 * 110.99763 * 56.04518 * 18 17 15 37 37 H 1.00897 * 110.99700 * 179.97438 * 18 17 15 38 38 H 1.08997 * 109.47219 * 300.15715 * 21 19 15 39 39 H 1.09003 * 109.47093 * 60.15773 * 21 19 15 40 40 H 1.09004 * 109.47017 * 180.15762 * 21 19 15 41 41 H 1.09001 * 109.50504 * 177.59596 * 22 19 15 42 42 H 1.09001 * 109.50140 * 297.71469 * 22 19 15 43 43 H 1.09000 * 109.46760 * 307.65189 * 25 23 13 44 44 H 1.09001 * 109.46888 * 67.64562 * 25 23 13 45 45 H 1.08999 * 109.47210 * 187.64802 * 25 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6030 1.9823 -0.8399 5 6 3.5416 1.4443 -0.1285 6 1 4.1493 1.8880 0.6462 7 6 4.1395 0.8795 -1.2350 8 7 3.3995 0.3396 -2.1786 9 14 6.0007 0.8812 -1.3939 10 1 6.5983 1.5441 -0.2070 11 1 6.4916 -0.5178 -1.4785 12 1 6.3920 1.6181 -2.6223 13 7 1.6553 2.0979 1.2571 14 6 1.8630 1.2026 2.4024 15 6 1.5917 1.9636 3.7022 16 1 2.2817 2.8035 3.7830 17 6 1.7869 1.0244 4.8941 18 7 3.1970 0.6199 4.9730 19 6 0.1517 2.4841 3.6919 20 1 -0.0326 3.0636 4.5966 21 6 -0.8198 1.3034 3.6343 22 6 -0.0520 3.3748 2.4633 23 6 0.2671 2.5730 1.1994 24 1 -0.4066 1.7187 1.1316 25 6 0.0841 3.4651 -0.0300 26 1 -0.3634 0.1642 1.0145 27 1 -0.3633 0.7966 -0.6493 28 1 -0.3634 -0.9606 -0.3650 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.8202 -0.0575 -2.9573 32 1 1.1820 0.3548 2.3289 33 1 2.8921 0.8430 2.4003 34 1 1.5048 1.5394 5.8125 35 1 1.1619 0.1406 4.7666 36 1 3.8018 1.4257 5.0269 37 1 3.3519 -0.0009 5.7532 38 1 -0.6348 0.7245 2.7295 39 1 -0.6725 0.6688 4.5082 40 1 -1.8441 1.6760 3.6243 41 1 -1.0873 3.7141 2.4273 42 1 0.6122 4.2369 2.5247 43 1 0.8482 4.2424 -0.0318 44 1 0.1771 2.8622 -0.9334 45 1 -0.9032 3.9261 -0.0008 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397299521.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:23:08 Heat of formation + Delta-G solvation = -20.348831 kcal Electronic energy + Delta-G solvation = -21337.946294 eV Core-core repulsion = 18582.138120 eV Total energy + Delta-G solvation = -2755.808174 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -41.15020 -37.49787 -35.48629 -34.05602 -32.78560 -32.07405 -29.25432 -28.18555 -27.61869 -25.45088 -24.63796 -23.37556 -21.58120 -20.85421 -19.19406 -18.24893 -17.32995 -16.58235 -16.27332 -15.96565 -15.74060 -15.43214 -15.23185 -14.81203 -14.38087 -14.11718 -13.72184 -13.37503 -13.29179 -13.13074 -12.89819 -12.73419 -12.69967 -12.54633 -12.49239 -12.34708 -12.24487 -12.02653 -11.81590 -11.62730 -11.26852 -11.18253 -10.98763 -10.75088 -10.62805 -10.26338 -9.42422 -8.47339 -8.02371 -6.10652 1.40269 1.42381 1.54229 2.47008 3.24688 3.46915 3.68362 3.97401 4.02768 4.16604 4.25613 4.33464 4.49151 4.54376 4.58168 4.62076 4.65578 4.68326 4.80568 4.86698 4.88521 4.91195 4.97667 5.07125 5.10925 5.20329 5.23851 5.28281 5.29950 5.39021 5.42977 5.47604 5.51740 5.66140 5.69597 5.73034 5.89226 5.96552 6.36458 6.42190 6.70359 6.75048 7.01295 7.06094 7.57743 9.02096 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.019817 B = 0.008338 C = 0.006932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.624136 B = 3357.148603 C = 4038.327009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.144 4.144 3 C 0.219 3.781 4 H 0.021 0.979 5 C -0.501 4.501 6 H 0.045 0.955 7 C 0.010 3.990 8 N -0.920 5.920 9 Si 0.950 3.050 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.282 1.282 13 N -0.536 5.536 14 C 0.090 3.910 15 C -0.075 4.075 16 H 0.057 0.943 17 C 0.075 3.925 18 N -0.863 5.863 19 C -0.080 4.080 20 H 0.085 0.915 21 C -0.151 4.151 22 C -0.100 4.100 23 C 0.058 3.942 24 H 0.055 0.945 25 C -0.140 4.140 26 H 0.061 0.939 27 H 0.044 0.956 28 H 0.042 0.958 29 H 0.060 0.940 30 H 0.030 0.970 31 H 0.257 0.743 32 H 0.021 0.979 33 H 0.047 0.953 34 H 0.042 0.958 35 H 0.068 0.932 36 H 0.343 0.657 37 H 0.348 0.652 38 H 0.042 0.958 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.080 0.920 42 H 0.056 0.944 43 H 0.045 0.955 44 H 0.035 0.965 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.330 2.957 13.386 16.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.183 4.183 3 C 0.112 3.888 4 H 0.038 0.962 5 C -0.540 4.540 6 H 0.063 0.937 7 C -0.188 4.188 8 N -0.561 5.561 9 Si 0.777 3.223 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.208 1.208 13 N -0.260 5.260 14 C -0.038 4.038 15 C -0.095 4.095 16 H 0.076 0.924 17 C -0.056 4.056 18 N -0.394 5.394 19 C -0.099 4.099 20 H 0.103 0.897 21 C -0.208 4.208 22 C -0.138 4.138 23 C -0.050 4.050 24 H 0.072 0.928 25 C -0.197 4.197 26 H 0.080 0.920 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.079 0.921 30 H 0.049 0.951 31 H 0.067 0.933 32 H 0.039 0.961 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.086 0.914 36 H 0.155 0.845 37 H 0.161 0.839 38 H 0.060 0.940 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.098 0.902 42 H 0.075 0.925 43 H 0.064 0.936 44 H 0.054 0.946 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.132 2.965 12.565 15.258 hybrid contribution 0.873 -0.466 0.052 0.991 sum -7.259 2.499 12.617 14.769 Atomic orbital electron populations 1.22063 0.96855 1.00247 1.00597 1.22041 0.94027 1.01622 1.00655 1.19157 0.93617 0.88793 0.87229 0.96161 1.21465 0.93033 1.35255 1.04258 0.93684 1.25592 1.01783 0.95622 0.95784 1.70009 1.35858 1.40313 1.09937 0.85624 0.81540 0.77414 0.77728 1.19660 1.20959 1.20808 1.62151 1.20605 1.39667 1.03627 1.21726 0.99498 0.93026 0.89568 1.21206 0.96846 0.97412 0.93990 0.92438 1.21784 0.89597 0.98179 0.96003 1.58601 1.05964 1.22900 1.51945 1.21119 0.93720 0.96695 0.98379 0.89714 1.22013 0.99167 0.98031 1.01595 1.21627 1.01257 0.97715 0.93169 1.22034 0.90235 0.97319 0.95390 0.92793 1.21860 1.01267 0.99354 0.97229 0.92028 0.93711 0.93868 0.92109 0.95135 0.93338 0.96098 0.93447 0.93946 0.91362 0.84465 0.83862 0.93958 0.91771 0.91484 0.90166 0.92545 0.93619 0.94610 0.90674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.62 8.15 71.98 0.59 -5.03 16 2 C -0.14 -7.04 4.72 30.59 0.14 -6.90 16 3 C 0.22 11.16 1.71 44.17 0.08 11.24 16 4 H 0.02 1.15 5.25 -2.39 -0.01 1.14 16 5 C -0.50 -28.65 8.13 25.60 0.21 -28.45 16 6 H 0.04 2.65 7.81 -2.91 -0.02 2.63 16 7 C 0.01 0.55 5.29 84.65 0.45 1.00 16 8 N -0.92 -54.24 11.29 21.45 0.24 -54.00 16 9 Si 0.95 45.78 29.54 68.60 2.03 47.80 16 10 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 11 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 12 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 13 N -0.54 -22.80 4.35 -850.41 -3.70 -26.50 16 14 C 0.09 3.49 3.04 86.33 0.26 3.75 16 15 C -0.08 -2.22 2.27 -10.74 -0.02 -2.25 16 16 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 17 C 0.08 1.83 5.60 86.30 0.48 2.32 16 18 N -0.86 -21.76 9.11 -186.71 -1.70 -23.46 16 19 C -0.08 -1.98 2.77 -10.71 -0.03 -2.01 16 20 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 21 C -0.15 -3.46 8.20 71.98 0.59 -2.87 16 22 C -0.10 -2.75 4.87 30.65 0.15 -2.61 16 23 C 0.06 2.03 1.53 44.94 0.07 2.10 16 24 H 0.05 1.88 3.00 -2.39 -0.01 1.87 16 25 C -0.14 -4.92 8.44 71.98 0.61 -4.32 16 26 H 0.06 2.21 3.64 -2.38 -0.01 2.20 16 27 H 0.04 1.79 6.37 -2.39 -0.02 1.77 16 28 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.06 3.41 5.95 -2.39 -0.01 3.40 16 30 H 0.03 1.51 6.13 -2.39 -0.01 1.49 16 31 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 32 H 0.02 0.83 3.97 -2.39 -0.01 0.82 16 33 H 0.05 2.19 7.22 -2.38 -0.02 2.17 16 34 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.07 1.69 6.69 -2.39 -0.02 1.68 16 36 H 0.34 8.27 8.99 -89.70 -0.81 7.46 16 37 H 0.35 6.93 9.08 -89.70 -0.81 6.12 16 38 H 0.04 1.17 3.46 -2.39 -0.01 1.16 16 39 H 0.06 1.30 6.52 -2.39 -0.02 1.28 16 40 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.03 1.43 5.52 -2.39 -0.01 1.41 16 45 H 0.07 2.10 8.13 -2.39 -0.02 2.08 16 Total: -1.00 -62.75 311.52 -0.18 -62.93 By element: Atomic # 1 Polarization: 27.86 SS G_CDS: -0.62 Total: 27.24 kcal Atomic # 6 Polarization: -37.59 SS G_CDS: 3.57 Total: -34.02 kcal Atomic # 7 Polarization: -98.80 SS G_CDS: -5.15 Total: -103.95 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.80 kcal Total: -62.75 -0.18 -62.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397299521.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.578 kcal (2) G-P(sol) polarization free energy of solvation -62.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds