Wall clock time and date at job start Thu Apr 9 2020 14:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47039 * 2 1 4 4 H 1.08998 * 109.46963 * 307.04291 * 3 2 1 5 5 C 1.50700 * 109.47097 * 187.04150 * 3 2 1 6 6 H 1.07999 * 119.99858 * 245.96260 * 5 3 2 7 7 C 1.37875 * 120.00014 * 65.97278 * 5 3 2 8 8 N 1.31516 * 120.00228 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99973 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47275 * 359.97438 * 9 7 5 11 11 H 1.48508 * 109.47001 * 119.99596 * 9 7 5 12 12 H 1.48501 * 109.47169 * 239.99260 * 9 7 5 13 13 N 1.46906 * 109.46995 * 67.03869 * 3 2 1 14 14 C 1.46265 * 111.33171 * 277.75773 * 13 3 2 15 15 C 1.52813 * 109.25235 * 171.73094 * 14 13 3 16 16 H 1.09351 * 109.17829 * 299.42873 * 15 14 13 17 17 C 1.53206 * 109.34438 * 180.42713 * 15 14 13 18 18 N 1.46894 * 109.46896 * 63.89473 * 17 15 14 19 19 C 1.52436 * 110.37781 * 59.80379 * 15 14 13 20 20 H 1.10861 * 107.35722 * 191.04336 * 19 15 14 21 21 C 1.52845 * 110.56046 * 74.63422 * 19 15 14 22 22 C 1.51827 * 112.41137 * 309.32768 * 19 15 14 23 23 C 1.45804 * 111.58522 * 149.95278 * 13 3 2 24 24 H 1.11071 * 107.06149 * 297.23806 * 23 13 3 25 25 C 1.52874 * 110.79456 * 53.17569 * 23 13 3 26 26 H 1.08998 * 109.46466 * 161.91971 * 1 2 3 27 27 H 1.09003 * 109.47116 * 281.91646 * 1 2 3 28 28 H 1.08998 * 109.47342 * 41.92375 * 1 2 3 29 29 H 1.09001 * 109.47682 * 240.00212 * 2 1 3 30 30 H 1.09000 * 109.47381 * 119.99612 * 2 1 3 31 31 H 0.96998 * 120.00264 * 179.97438 * 8 7 5 32 32 H 1.09611 * 108.98755 * 52.96507 * 14 13 3 33 33 H 1.08612 * 110.88853 * 293.68023 * 14 13 3 34 34 H 1.08996 * 109.47137 * 183.89968 * 17 15 14 35 35 H 1.09007 * 109.46831 * 303.89717 * 17 15 14 36 36 H 1.00895 * 111.00131 * 56.05325 * 18 17 15 37 37 H 1.00908 * 111.00014 * 180.02562 * 18 17 15 38 38 H 1.08997 * 109.47181 * 60.00338 * 21 19 15 39 39 H 1.09001 * 109.47449 * 300.00152 * 21 19 15 40 40 H 1.08999 * 109.46936 * 179.97438 * 21 19 15 41 41 H 1.10103 * 108.87119 * 164.57363 * 22 19 15 42 42 H 1.10159 * 108.78774 * 280.04912 * 22 19 15 43 43 H 1.09005 * 109.47589 * 52.88115 * 25 23 13 44 44 H 1.09001 * 109.47557 * 172.87506 * 25 23 13 45 45 H 1.08997 * 109.47535 * 292.88272 * 25 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5774 1.9914 -0.8203 5 6 3.5369 1.4461 -0.1742 6 1 4.1729 1.7932 0.6267 7 6 4.0944 1.0066 -1.3561 8 7 3.3200 0.5837 -2.3313 9 14 5.9499 1.0117 -1.5722 10 1 6.5907 1.5313 -0.3374 11 1 6.4219 -0.3724 -1.8306 12 1 6.3120 1.8807 -2.7207 13 7 1.6938 2.0843 1.2753 14 6 0.3161 2.5756 1.2670 15 6 -0.0600 3.0446 2.6719 16 1 0.0183 2.2024 3.3648 17 6 -1.5064 3.5498 2.6680 18 7 -2.4122 2.4387 2.3474 19 6 0.8708 4.1636 3.1249 20 1 0.6907 4.3261 4.2066 21 6 0.5250 5.4709 2.4124 22 6 2.3356 3.8048 2.9491 23 6 2.6694 3.1026 1.6456 24 1 3.6422 2.5857 1.7874 25 6 2.8670 4.1042 0.5077 26 1 -0.3632 -0.9769 -0.3189 27 1 -0.3633 0.2122 1.0055 28 1 -0.3634 0.7646 -0.6866 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.7122 0.2748 -3.1629 32 1 -0.3527 1.7570 0.9770 33 1 0.1979 3.3850 0.5526 34 1 -1.7546 3.9488 3.6514 35 1 -1.6151 4.3347 1.9194 36 1 -2.2844 1.6711 2.9896 37 1 -3.3731 2.7466 2.3382 38 1 -0.5026 5.7504 2.6445 39 1 0.6309 5.3371 1.3358 40 1 1.2000 6.2577 2.7492 41 1 2.9385 4.7231 3.0231 42 1 2.6465 3.1618 3.7877 43 1 1.8989 4.4987 0.1986 44 1 3.5002 4.9228 0.8499 45 1 3.3425 3.6056 -0.3368 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397299522.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:23:12 Heat of formation + Delta-G solvation = -2.035084 kcal Electronic energy + Delta-G solvation = -21249.289487 eV Core-core repulsion = 18494.275456 eV Total energy + Delta-G solvation = -2755.014030 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.37534 -35.98260 -34.16017 -32.22965 -31.74326 -30.06144 -27.77557 -26.80200 -26.23971 -23.80438 -22.82334 -21.74089 -20.57807 -19.10924 -17.45944 -16.21854 -15.77621 -15.33769 -14.76032 -14.56160 -14.11510 -14.01915 -13.35103 -13.27706 -12.86288 -12.52312 -12.47356 -12.14767 -11.76272 -11.71077 -11.51228 -11.17471 -10.94578 -10.83562 -10.81767 -10.72943 -10.50959 -10.30987 -9.99214 -9.90469 -9.86032 -9.59527 -9.35438 -8.88686 -8.46337 -8.41209 -8.33115 -6.79421 -5.97296 -3.98278 3.31069 3.39761 3.42922 4.44687 4.66054 4.92445 5.16916 5.24906 5.33730 5.37986 5.42333 5.66065 5.77598 5.87613 5.92199 6.02196 6.13171 6.14849 6.28134 6.36121 6.40196 6.43899 6.45695 6.53869 6.57291 6.63132 6.66617 6.77603 6.89391 6.95309 7.08548 7.18102 7.26283 7.29083 7.47290 7.52621 7.56560 7.74557 7.90520 8.00766 8.31153 8.51000 8.86987 9.10715 9.64145 11.10331 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.024547 B = 0.007798 C = 0.006365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.416489 B = 3589.670706 C = 4398.193923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.103 4.103 3 C 0.226 3.774 4 H 0.007 0.993 5 C -0.511 4.511 6 H 0.070 0.930 7 C 0.060 3.940 8 N -0.888 5.888 9 Si 0.887 3.113 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.286 1.286 13 N -0.539 5.539 14 C 0.056 3.944 15 C -0.074 4.074 16 H 0.068 0.932 17 C 0.067 3.933 18 N -0.847 5.847 19 C -0.076 4.076 20 H 0.047 0.953 21 C -0.149 4.149 22 C -0.101 4.101 23 C 0.098 3.902 24 H 0.082 0.918 25 C -0.180 4.180 26 H 0.027 0.973 27 H 0.051 0.949 28 H 0.041 0.959 29 H 0.079 0.921 30 H 0.038 0.962 31 H 0.259 0.741 32 H 0.100 0.900 33 H 0.015 0.985 34 H 0.018 0.982 35 H 0.071 0.929 36 H 0.339 0.661 37 H 0.335 0.665 38 H 0.048 0.952 39 H 0.060 0.940 40 H 0.047 0.953 41 H 0.052 0.948 42 H 0.051 0.949 43 H 0.035 0.965 44 H 0.031 0.969 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.407 5.926 9.372 13.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.142 4.142 3 C 0.120 3.880 4 H 0.024 0.976 5 C -0.549 4.549 6 H 0.088 0.912 7 C -0.142 4.142 8 N -0.527 5.527 9 Si 0.715 3.285 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.213 1.213 13 N -0.263 5.263 14 C -0.072 4.072 15 C -0.093 4.093 16 H 0.086 0.914 17 C -0.064 4.064 18 N -0.376 5.376 19 C -0.095 4.095 20 H 0.066 0.934 21 C -0.206 4.206 22 C -0.139 4.139 23 C -0.011 4.011 24 H 0.100 0.900 25 C -0.239 4.239 26 H 0.046 0.954 27 H 0.070 0.930 28 H 0.060 0.940 29 H 0.098 0.902 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.117 0.883 33 H 0.033 0.967 34 H 0.036 0.964 35 H 0.089 0.911 36 H 0.151 0.849 37 H 0.147 0.853 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.054 0.946 44 H 0.050 0.950 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.966 5.483 8.841 12.520 hybrid contribution 0.559 0.869 0.145 1.043 sum -6.407 6.352 8.986 12.734 Atomic orbital electron populations 1.22033 0.99333 0.98924 0.99975 1.21497 0.91723 0.99689 1.01255 1.19158 0.94759 0.90377 0.83720 0.97558 1.21531 0.91597 1.41994 0.99785 0.91218 1.24944 0.97578 0.95518 0.96122 1.69954 1.34324 1.43377 1.05042 0.86615 0.86250 0.77611 0.78005 1.19781 1.21115 1.21258 1.60751 0.99905 1.29721 1.35947 1.22180 0.92102 0.99625 0.93296 1.21043 0.91925 0.97073 0.99254 0.91392 1.21962 0.93101 0.93367 0.97985 1.58645 1.08776 1.10713 1.59429 1.20792 0.95564 0.94614 0.98512 0.93435 1.21958 1.00175 0.96702 1.01732 1.21392 0.94473 0.99510 0.98492 1.21118 0.97250 0.91058 0.91658 0.90023 1.22620 1.00165 0.98846 1.02243 0.95432 0.93041 0.93995 0.90240 0.94269 0.93155 0.88261 0.96705 0.96377 0.91106 0.84862 0.85332 0.93276 0.92061 0.93351 0.92886 0.92997 0.94566 0.94963 0.88984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.99 8.28 37.16 0.31 -2.68 16 2 C -0.10 -2.47 5.50 -26.73 -0.15 -2.62 16 3 C 0.23 5.55 1.11 -68.86 -0.08 5.47 16 4 H 0.01 0.19 7.76 -51.93 -0.40 -0.22 16 5 C -0.51 -13.41 5.63 -34.44 -0.19 -13.61 16 6 H 0.07 1.82 5.07 -52.49 -0.27 1.56 16 7 C 0.06 1.62 5.29 -17.82 -0.09 1.53 16 8 N -0.89 -25.10 11.76 55.43 0.65 -24.44 16 9 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 10 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 13 N -0.54 -11.38 4.28 -221.39 -0.95 -12.32 16 14 C 0.06 1.04 3.93 -4.26 -0.02 1.03 16 15 C -0.07 -1.12 2.31 -90.90 -0.21 -1.33 16 16 H 0.07 1.08 8.17 -51.73 -0.42 0.66 16 17 C 0.07 0.85 5.21 -3.72 -0.02 0.83 16 18 N -0.85 -10.06 9.01 -10.28 -0.09 -10.15 16 19 C -0.08 -1.10 2.37 -91.58 -0.22 -1.31 16 20 H 0.05 0.63 8.28 -50.86 -0.42 0.21 16 21 C -0.15 -2.00 8.20 37.08 0.30 -1.69 16 22 C -0.10 -1.64 4.92 -27.95 -0.14 -1.78 16 23 C 0.10 1.94 2.13 -68.99 -0.15 1.79 16 24 H 0.08 1.80 5.74 -50.74 -0.29 1.51 16 25 C -0.18 -3.63 8.30 37.09 0.31 -3.32 16 26 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.99 6.33 -51.93 -0.33 0.66 16 28 H 0.04 0.88 7.50 -51.93 -0.39 0.49 16 29 H 0.08 2.12 6.43 -51.93 -0.33 1.79 16 30 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.10 1.91 3.24 -51.58 -0.17 1.74 16 33 H 0.01 0.30 6.17 -52.15 -0.32 -0.02 16 34 H 0.02 0.21 8.14 -51.93 -0.42 -0.22 16 35 H 0.07 0.94 6.75 -51.92 -0.35 0.59 16 36 H 0.34 3.74 8.99 -39.29 -0.35 3.39 16 37 H 0.33 3.22 9.08 -39.29 -0.36 2.86 16 38 H 0.05 0.58 6.53 -51.93 -0.34 0.24 16 39 H 0.06 0.94 5.28 -51.93 -0.27 0.66 16 40 H 0.05 0.60 8.07 -51.93 -0.42 0.18 16 41 H 0.05 0.80 7.70 -51.30 -0.40 0.40 16 42 H 0.05 0.83 8.24 -51.27 -0.42 0.41 16 43 H 0.04 0.72 5.19 -51.93 -0.27 0.45 16 44 H 0.03 0.57 7.88 -51.93 -0.41 0.16 16 45 H 0.09 2.16 5.64 -51.93 -0.29 1.87 16 LS Contribution 315.86 15.07 4.76 4.76 Total: -1.00 -27.33 315.86 -8.62 -35.95 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -7.63 Total: 7.85 kcal Atomic # 6 Polarization: -17.35 SS G_CDS: -0.34 Total: -17.69 kcal Atomic # 7 Polarization: -46.53 SS G_CDS: -0.39 Total: -46.92 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -27.33 -8.62 -35.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397299522.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.917 kcal (2) G-P(sol) polarization free energy of solvation -27.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds