Wall clock time and date at job start Thu Apr 9 2020 14:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47347 * 2 1 4 4 H 1.08994 * 109.47215 * 302.50714 * 3 2 1 5 5 C 1.50703 * 109.46971 * 182.51360 * 3 2 1 6 6 H 1.07998 * 120.00080 * 239.99739 * 5 3 2 7 7 C 1.37878 * 120.00391 * 60.00044 * 5 3 2 8 8 N 1.31514 * 119.99351 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 120.00148 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47151 * 60.00031 * 9 7 5 11 11 H 1.48505 * 109.47114 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47379 * 300.00001 * 9 7 5 13 13 N 1.46902 * 109.47298 * 62.51352 * 3 2 1 14 14 C 1.46841 * 110.99807 * 42.74830 * 13 3 2 15 15 C 1.53038 * 109.52235 * 174.16082 * 14 13 3 16 16 H 1.09003 * 109.50314 * 299.19886 * 15 14 13 17 17 C 1.53005 * 109.50321 * 179.12108 * 15 14 13 18 18 N 1.46895 * 109.47236 * 65.08281 * 17 15 14 19 19 C 1.53118 * 109.30882 * 59.16204 * 15 14 13 20 20 H 1.08994 * 109.52451 * 62.27342 * 19 15 14 21 21 C 1.53006 * 109.52071 * 182.46081 * 19 15 14 22 22 C 1.53125 * 109.15834 * 302.40345 * 19 15 14 23 23 C 1.46845 * 110.99954 * 278.54038 * 13 3 2 24 24 H 1.08999 * 109.45872 * 65.83117 * 23 13 3 25 25 C 1.53002 * 109.46057 * 305.85825 * 23 13 3 26 26 H 1.09004 * 109.46829 * 281.43493 * 1 2 3 27 27 H 1.09001 * 109.46875 * 41.42988 * 1 2 3 28 28 H 1.08997 * 109.47041 * 161.43334 * 1 2 3 29 29 H 1.09001 * 109.47425 * 239.99845 * 2 1 3 30 30 H 1.09002 * 109.47421 * 119.99860 * 2 1 3 31 31 H 0.97006 * 119.99675 * 180.02562 * 8 7 5 32 32 H 1.09008 * 109.46718 * 54.14947 * 14 13 3 33 33 H 1.08995 * 109.46810 * 294.18084 * 14 13 3 34 34 H 1.08994 * 109.47048 * 305.08051 * 17 15 14 35 35 H 1.09002 * 109.46988 * 185.07678 * 17 15 14 36 36 H 1.00897 * 111.00494 * 179.97438 * 18 17 15 37 37 H 1.00904 * 110.99725 * 303.95261 * 18 17 15 38 38 H 1.09001 * 109.47060 * 60.00022 * 21 19 15 39 39 H 1.09004 * 109.46948 * 179.97438 * 21 19 15 40 40 H 1.08999 * 109.46907 * 299.99670 * 21 19 15 41 41 H 1.09004 * 109.46834 * 297.65641 * 22 19 15 42 42 H 1.09000 * 109.50694 * 177.55640 * 22 19 15 43 43 H 1.08998 * 109.47727 * 69.25115 * 25 23 13 44 44 H 1.09001 * 109.47157 * 189.25628 * 25 23 13 45 45 H 1.09009 * 109.46859 * 309.24740 * 25 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6405 1.9691 -0.8666 5 6 3.5458 1.4428 -0.0623 6 1 4.1190 1.8987 0.7314 7 6 4.1917 0.8612 -1.1326 8 7 3.4936 0.3056 -2.0989 9 14 6.0580 0.8623 -1.2101 10 1 6.6029 0.1451 -0.0295 11 1 6.5023 0.1795 -2.4518 12 1 6.5526 2.2625 -1.2105 13 7 1.6006 2.1173 1.2287 14 6 1.7591 1.2406 2.3959 15 6 1.4310 2.0217 3.6704 16 1 2.1167 2.8633 3.7681 17 6 1.5750 1.1018 4.8846 18 7 2.9800 0.6984 5.0294 19 6 -0.0073 2.5407 3.5900 20 1 -0.6960 1.6979 3.5323 21 6 -0.3204 3.3741 4.8344 22 6 -0.1584 3.4107 2.3391 23 6 0.2158 2.5894 1.1033 24 1 -0.4536 1.7332 1.0200 25 6 0.0858 3.4616 -0.1471 26 1 -0.3633 0.2037 1.0073 27 1 -0.3633 0.7705 -0.6800 28 1 -0.3633 -0.9742 -0.3272 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.9480 -0.1040 -2.8517 32 1 2.7874 0.8823 2.4442 33 1 1.0825 0.3907 2.3065 34 1 0.9552 0.2162 4.7450 35 1 1.2548 1.6316 5.7818 36 1 3.1015 0.0902 5.8253 37 1 3.3197 0.2621 4.1854 38 1 0.3674 4.2179 4.8890 39 1 -1.3443 3.7435 4.7761 40 1 -0.2073 2.7549 5.7243 41 1 0.5019 4.2747 2.4155 42 1 -1.1914 3.7479 2.2528 43 1 0.1900 2.8399 -1.0363 44 1 -0.8915 3.9441 -0.1535 45 1 0.8665 4.2224 -0.1421 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397299523.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:23:14 Heat of formation + Delta-G solvation = -5.478285 kcal Electronic energy + Delta-G solvation = -21132.678023 eV Core-core repulsion = 18377.514684 eV Total energy + Delta-G solvation = -2755.163339 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.53892 -36.16458 -34.13472 -32.47961 -31.27058 -30.54619 -28.11453 -26.79243 -25.91941 -23.78461 -22.93547 -21.62156 -19.97637 -19.40848 -18.70959 -16.30384 -15.73319 -15.35292 -14.82997 -14.45653 -14.20025 -13.87639 -13.52218 -13.35389 -13.14773 -12.52834 -12.34398 -12.29155 -11.96461 -11.61499 -11.49031 -11.24567 -11.12607 -10.96572 -10.91886 -10.71725 -10.69191 -10.36208 -10.19818 -10.15329 -10.00926 -9.66365 -9.51801 -9.18253 -8.80891 -8.47163 -8.24304 -6.89871 -5.94700 -3.96850 3.36628 3.40568 3.44644 4.46515 4.73644 4.92744 5.10737 5.16154 5.24649 5.35583 5.49402 5.67917 5.73997 5.81934 5.83488 5.90849 5.97810 6.07182 6.08978 6.17804 6.18659 6.20291 6.30311 6.35305 6.41588 6.46122 6.51230 6.61562 6.71638 6.79002 6.84488 6.85854 7.01110 7.06668 7.32462 7.36918 7.59548 7.63802 7.77629 7.94621 8.31031 8.50288 8.71350 9.10745 9.67721 11.11819 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.020067 B = 0.007880 C = 0.006633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.021656 B = 3552.586566 C = 4220.600690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.151 4.151 3 C 0.212 3.788 4 H 0.048 0.952 5 C -0.492 4.492 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.894 3.106 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.278 1.278 13 N -0.520 5.520 14 C 0.070 3.930 15 C -0.081 4.081 16 H 0.082 0.918 17 C 0.068 3.932 18 N -0.851 5.851 19 C -0.085 4.085 20 H 0.059 0.941 21 C -0.145 4.145 22 C -0.103 4.103 23 C 0.060 3.940 24 H 0.051 0.949 25 C -0.143 4.143 26 H 0.041 0.959 27 H 0.047 0.953 28 H 0.030 0.970 29 H 0.096 0.904 30 H 0.036 0.964 31 H 0.259 0.741 32 H 0.076 0.924 33 H 0.022 0.978 34 H 0.019 0.981 35 H 0.068 0.932 36 H 0.333 0.667 37 H 0.346 0.654 38 H 0.054 0.946 39 H 0.048 0.952 40 H 0.051 0.949 41 H 0.065 0.935 42 H 0.053 0.947 43 H 0.060 0.940 44 H 0.042 0.958 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.676 1.756 10.134 12.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.191 4.191 3 C 0.106 3.894 4 H 0.065 0.935 5 C -0.531 4.531 6 H 0.079 0.921 7 C -0.144 4.144 8 N -0.537 5.537 9 Si 0.722 3.278 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.203 1.203 13 N -0.245 5.245 14 C -0.059 4.059 15 C -0.101 4.101 16 H 0.101 0.899 17 C -0.064 4.064 18 N -0.382 5.382 19 C -0.105 4.105 20 H 0.077 0.923 21 C -0.202 4.202 22 C -0.141 4.141 23 C -0.048 4.048 24 H 0.068 0.932 25 C -0.200 4.200 26 H 0.059 0.941 27 H 0.066 0.934 28 H 0.049 0.951 29 H 0.114 0.886 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.095 0.905 33 H 0.040 0.960 34 H 0.037 0.963 35 H 0.087 0.913 36 H 0.144 0.856 37 H 0.161 0.839 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.084 0.916 42 H 0.072 0.928 43 H 0.079 0.921 44 H 0.061 0.939 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.201 2.864 10.107 12.736 hybrid contribution 0.120 -1.827 -0.399 1.874 sum -7.080 1.037 9.708 12.060 Atomic orbital electron populations 1.22200 0.99802 0.99584 0.99396 1.22249 0.91338 1.02663 1.02838 1.19455 0.94997 0.88234 0.86736 0.93475 1.21141 0.90927 1.35159 1.05872 0.92081 1.24916 0.98074 0.95666 0.95722 1.69869 1.34928 1.38742 1.10159 0.86629 0.85963 0.78165 0.77026 1.20454 1.21587 1.20335 1.62223 1.17977 1.39747 1.04522 1.21965 1.00885 0.93419 0.89595 1.21305 0.96094 0.98767 0.93895 0.89925 1.21866 0.88485 0.97315 0.98693 1.58743 1.19729 1.50411 1.09274 1.21138 0.96591 0.97815 0.94910 0.92269 1.21866 1.00815 0.99985 0.97549 1.21669 0.99936 0.98627 0.93864 1.21953 0.91918 0.96960 0.94015 0.93191 1.21880 1.00151 1.00110 0.97853 0.94076 0.93363 0.95054 0.88591 0.94519 0.93119 0.90535 0.95961 0.96325 0.91348 0.85561 0.83933 0.92647 0.93299 0.92978 0.91582 0.92827 0.92102 0.93873 0.92025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 8.08 37.16 0.30 -2.69 16 2 C -0.15 -3.50 4.69 -26.73 -0.13 -3.63 16 3 C 0.21 5.11 1.73 -68.86 -0.12 4.99 16 4 H 0.05 1.24 5.36 -51.93 -0.28 0.97 16 5 C -0.49 -13.29 8.13 -34.44 -0.28 -13.57 16 6 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 7 C 0.06 1.54 5.30 -17.82 -0.09 1.45 16 8 N -0.90 -25.24 11.30 55.43 0.63 -24.61 16 9 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 N -0.52 -10.76 4.35 -220.15 -0.96 -11.72 16 14 C 0.07 1.31 3.15 -3.84 -0.01 1.30 16 15 C -0.08 -1.28 2.06 -90.54 -0.19 -1.46 16 16 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 17 C 0.07 0.92 6.07 -3.82 -0.02 0.89 16 18 N -0.85 -11.60 9.62 -10.37 -0.10 -11.70 16 19 C -0.09 -1.20 2.29 -90.49 -0.21 -1.41 16 20 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 21 C -0.14 -1.70 8.92 37.16 0.33 -1.36 16 22 C -0.10 -1.56 4.65 -26.65 -0.12 -1.68 16 23 C 0.06 1.07 1.77 -67.73 -0.12 0.95 16 24 H 0.05 0.91 4.02 -51.93 -0.21 0.70 16 25 C -0.14 -2.51 8.40 37.16 0.31 -2.20 16 26 H 0.04 0.75 4.94 -51.93 -0.26 0.50 16 27 H 0.05 0.94 6.45 -51.93 -0.33 0.61 16 28 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.10 2.52 6.01 -51.93 -0.31 2.21 16 30 H 0.04 0.84 6.31 -51.93 -0.33 0.51 16 31 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 32 H 0.08 1.58 6.15 -51.92 -0.32 1.26 16 33 H 0.02 0.43 5.25 -51.93 -0.27 0.15 16 34 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.07 0.85 6.27 -51.93 -0.33 0.53 16 36 H 0.33 3.70 9.08 -39.29 -0.36 3.35 16 37 H 0.35 5.07 7.27 -39.29 -0.29 4.78 16 38 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.05 0.56 6.40 -51.93 -0.33 0.23 16 41 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.06 1.17 5.68 -51.93 -0.29 0.88 16 44 H 0.04 0.64 8.12 -51.93 -0.42 0.21 16 45 H 0.06 1.14 8.14 -51.92 -0.42 0.72 16 LS Contribution 318.04 15.07 4.79 4.79 Total: -1.00 -27.31 318.04 -8.68 -36.00 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -7.68 Total: 9.23 kcal Atomic # 6 Polarization: -18.08 SS G_CDS: -0.35 Total: -18.43 kcal Atomic # 7 Polarization: -47.60 SS G_CDS: -0.43 Total: -48.03 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -27.31 -8.68 -36.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397299523.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.517 kcal (2) G-P(sol) polarization free energy of solvation -27.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds