Wall clock time and date at job start Thu Apr 9 2020 14:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47092 * 2 1 4 4 H 1.09005 * 109.46852 * 302.51734 * 3 2 1 5 5 C 1.50697 * 109.47089 * 182.52001 * 3 2 1 6 6 H 1.08008 * 119.99693 * 239.14695 * 5 3 2 7 7 C 1.37870 * 120.00212 * 59.14230 * 5 3 2 8 8 N 1.31516 * 120.00352 * 0.02562 * 7 5 3 9 9 Si 1.86811 * 120.00133 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.46832 * 89.99997 * 9 7 5 11 11 H 1.48498 * 109.47270 * 210.00345 * 9 7 5 12 12 H 1.48502 * 109.46867 * 330.00353 * 9 7 5 13 13 N 1.46904 * 109.47178 * 62.51709 * 3 2 1 14 14 C 1.46848 * 110.99733 * 168.92661 * 13 3 2 15 15 C 1.53038 * 109.51739 * 174.16103 * 14 13 3 16 16 H 1.08995 * 109.50611 * 299.23358 * 15 14 13 17 17 C 1.53009 * 109.49956 * 179.12174 * 15 14 13 18 18 N 1.46891 * 109.47390 * 64.99878 * 17 15 14 19 19 C 1.53119 * 109.28138 * 59.18042 * 15 14 13 20 20 H 1.09002 * 109.52302 * 62.30913 * 19 15 14 21 21 C 1.53002 * 109.52486 * 182.43652 * 19 15 14 22 22 C 1.53115 * 109.15934 * 302.34559 * 19 15 14 23 23 C 1.46842 * 110.99697 * 44.71844 * 13 3 2 24 24 H 1.09000 * 109.46612 * 305.85254 * 23 13 3 25 25 C 1.52999 * 109.46782 * 65.82357 * 23 13 3 26 26 H 1.09002 * 109.47148 * 295.87271 * 1 2 3 27 27 H 1.09004 * 109.47069 * 55.87257 * 1 2 3 28 28 H 1.09001 * 109.47395 * 175.87673 * 1 2 3 29 29 H 1.09005 * 109.46924 * 239.99984 * 2 1 3 30 30 H 1.08995 * 109.47149 * 119.99761 * 2 1 3 31 31 H 0.96999 * 120.00166 * 179.97438 * 8 7 5 32 32 H 1.08998 * 109.46463 * 294.17337 * 14 13 3 33 33 H 1.08996 * 109.46104 * 54.15859 * 14 13 3 34 34 H 1.08996 * 109.46695 * 185.00412 * 17 15 14 35 35 H 1.09004 * 109.46731 * 304.99483 * 17 15 14 36 36 H 1.00910 * 111.00108 * 56.04418 * 18 17 15 37 37 H 1.00894 * 111.00307 * 180.02562 * 18 17 15 38 38 H 1.08997 * 109.46985 * 59.99811 * 21 19 15 39 39 H 1.08999 * 109.47051 * 180.02562 * 21 19 15 40 40 H 1.08999 * 109.46794 * 300.00357 * 21 19 15 41 41 H 1.08995 * 109.50473 * 177.59368 * 22 19 15 42 42 H 1.09002 * 109.50147 * 297.67156 * 22 19 15 43 43 H 1.09001 * 109.46663 * 51.71800 * 25 23 13 44 44 H 1.08994 * 109.47857 * 171.72340 * 25 23 13 45 45 H 1.08999 * 109.46653 * 291.72691 * 25 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6402 1.9692 -0.8666 5 6 3.5457 1.4430 -0.0625 6 1 4.1186 1.9110 0.7244 7 6 4.1918 0.8459 -1.1240 8 7 3.4942 0.2763 -2.0824 9 14 6.0583 0.8458 -1.2010 10 1 6.5817 -0.3666 -0.5219 11 1 6.4952 0.8458 -2.6203 12 1 6.5817 2.0584 -0.5220 13 7 1.6006 2.1172 1.2287 14 6 2.2814 3.4080 1.3925 15 6 1.6959 4.1455 2.5989 16 1 0.6338 4.3269 2.4342 17 6 2.4204 5.4806 2.7822 18 7 2.1491 6.3476 1.6280 19 6 1.8795 3.2876 3.8538 20 1 2.9430 3.1395 4.0414 21 6 1.2421 3.9925 5.0529 22 6 1.2029 1.9310 3.6386 23 6 1.8026 1.2577 2.4020 24 1 1.3130 0.2978 2.2378 25 6 3.3007 1.0350 2.6191 26 1 -0.3633 0.4485 0.9247 27 1 -0.3633 0.5766 -0.8507 28 1 -0.3634 -1.0250 -0.0739 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.9488 -0.1435 -2.8294 32 1 3.3464 3.2393 1.5518 33 1 2.1393 4.0100 0.4950 34 1 2.0652 5.9647 3.6919 35 1 3.4933 5.3041 2.8599 36 1 1.1567 6.4740 1.4960 37 1 2.6172 7.2361 1.7251 38 1 0.1783 4.1382 4.8653 39 1 1.3737 3.3813 5.9457 40 1 1.7206 4.9605 5.2017 41 1 1.3667 1.3000 4.5120 42 1 0.1329 2.0775 3.4910 43 1 3.8123 1.9973 2.6362 44 1 3.4582 0.5228 3.5682 45 1 3.6988 0.4263 1.8072 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397299524.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:23:16 Heat of formation + Delta-G solvation = -3.666343 kcal Electronic energy + Delta-G solvation = -21251.566427 eV Core-core repulsion = 18496.481660 eV Total energy + Delta-G solvation = -2755.084767 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.55579 -36.11597 -33.93086 -32.27345 -31.16495 -30.53825 -27.85810 -26.84979 -25.42331 -24.20241 -22.51941 -21.23666 -20.93850 -19.19692 -17.70384 -16.48395 -15.70190 -15.28942 -14.83658 -14.45872 -14.11635 -13.92033 -13.14917 -12.92553 -12.74806 -12.71592 -12.61634 -11.92246 -11.76339 -11.58785 -11.50553 -11.22132 -11.05838 -11.01897 -10.84934 -10.72503 -10.52759 -10.25152 -10.02529 -9.88832 -9.78026 -9.49513 -9.35535 -9.04426 -8.75050 -8.35845 -8.23532 -6.93723 -5.88401 -3.98369 3.30900 3.38684 3.41743 4.46553 4.72812 4.99798 5.18143 5.30529 5.31796 5.36406 5.49711 5.72515 5.84158 5.89105 6.01288 6.03893 6.07176 6.22310 6.27791 6.29713 6.42144 6.43002 6.47426 6.50977 6.57403 6.70132 6.71098 6.77379 6.93738 7.00750 7.12680 7.19730 7.26988 7.34420 7.41147 7.48291 7.61745 7.79138 7.86042 8.14091 8.29763 8.52456 8.61752 9.09675 9.65300 11.09712 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.019382 B = 0.008274 C = 0.007151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.256539 B = 3383.345946 C = 3914.347261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.120 4.120 3 C 0.216 3.784 4 H 0.037 0.963 5 C -0.535 4.535 6 H 0.068 0.932 7 C 0.065 3.935 8 N -0.887 5.887 9 Si 0.881 3.119 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.276 1.276 13 N -0.531 5.531 14 C 0.078 3.922 15 C -0.077 4.077 16 H 0.066 0.934 17 C 0.067 3.933 18 N -0.845 5.845 19 C -0.087 4.087 20 H 0.066 0.934 21 C -0.146 4.146 22 C -0.103 4.103 23 C 0.083 3.917 24 H 0.079 0.921 25 C -0.185 4.185 26 H 0.045 0.955 27 H 0.040 0.960 28 H 0.024 0.976 29 H 0.093 0.907 30 H 0.037 0.963 31 H 0.259 0.741 32 H 0.041 0.959 33 H 0.073 0.927 34 H 0.022 0.978 35 H 0.066 0.934 36 H 0.338 0.662 37 H 0.334 0.666 38 H 0.050 0.950 39 H 0.048 0.952 40 H 0.049 0.951 41 H 0.052 0.948 42 H 0.059 0.941 43 H 0.051 0.949 44 H 0.025 0.975 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.086 6.358 10.671 13.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.159 4.159 3 C 0.109 3.891 4 H 0.055 0.945 5 C -0.574 4.574 6 H 0.086 0.914 7 C -0.137 4.137 8 N -0.526 5.526 9 Si 0.709 3.291 10 H -0.209 1.209 11 H -0.213 1.213 12 H -0.201 1.201 13 N -0.254 5.254 14 C -0.051 4.051 15 C -0.097 4.097 16 H 0.084 0.916 17 C -0.064 4.064 18 N -0.374 5.374 19 C -0.106 4.106 20 H 0.085 0.915 21 C -0.204 4.204 22 C -0.141 4.141 23 C -0.027 4.027 24 H 0.097 0.903 25 C -0.243 4.243 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.043 0.957 29 H 0.111 0.889 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.091 0.909 34 H 0.040 0.960 35 H 0.084 0.916 36 H 0.150 0.850 37 H 0.146 0.854 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.078 0.922 43 H 0.069 0.931 44 H 0.044 0.956 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.212 5.782 10.007 12.300 hybrid contribution 1.596 0.440 0.675 1.788 sum -2.615 6.222 10.681 12.635 Atomic orbital electron populations 1.21746 0.98987 0.98292 1.00617 1.21772 0.92090 0.99674 1.02321 1.19236 0.92657 0.90420 0.86759 0.94497 1.22041 0.92902 1.35625 1.06875 0.91378 1.24912 0.97512 0.95593 0.95661 1.69871 1.34701 1.37476 1.10598 0.86770 0.86880 0.78256 0.77159 1.20917 1.21345 1.20066 1.62565 1.56611 1.03258 1.02957 1.21802 0.96396 0.90536 0.96319 1.21262 0.99733 0.93125 0.95552 0.91553 1.21892 1.00477 0.93688 0.90333 1.58600 1.15785 1.18830 1.44202 1.21162 0.99914 0.95439 0.94050 0.91537 1.21899 1.00557 0.99908 0.97999 1.21664 0.99778 0.95198 0.97484 1.21555 0.94187 0.96725 0.90185 0.90286 1.22831 0.98619 1.01962 1.00892 0.93627 0.94041 0.95706 0.88865 0.94461 0.93120 0.94073 0.90868 0.96011 0.91557 0.84958 0.85413 0.93062 0.93289 0.93178 0.92964 0.92206 0.93060 0.95632 0.88997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 9.50 37.16 0.35 -2.47 16 2 C -0.12 -2.81 4.63 -26.73 -0.12 -2.93 16 3 C 0.22 5.23 2.02 -68.86 -0.14 5.09 16 4 H 0.04 1.03 8.14 -51.93 -0.42 0.60 16 5 C -0.54 -13.90 5.35 -34.44 -0.18 -14.08 16 6 H 0.07 1.77 4.13 -52.48 -0.22 1.55 16 7 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 8 N -0.89 -24.91 11.24 55.43 0.62 -24.29 16 9 Si 0.88 21.22 29.54 -169.99 -5.02 16.20 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 N -0.53 -10.99 4.25 -220.14 -0.94 -11.92 16 14 C 0.08 1.53 3.76 -3.83 -0.01 1.52 16 15 C -0.08 -1.20 1.99 -90.53 -0.18 -1.38 16 16 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 17 C 0.07 0.91 6.00 -3.82 -0.02 0.89 16 18 N -0.85 -10.94 9.10 -10.37 -0.09 -11.03 16 19 C -0.09 -1.26 1.98 -90.50 -0.18 -1.44 16 20 H 0.07 1.03 6.76 -51.93 -0.35 0.68 16 21 C -0.15 -1.74 8.91 37.16 0.33 -1.41 16 22 C -0.10 -1.62 4.89 -26.65 -0.13 -1.75 16 23 C 0.08 1.55 2.11 -67.72 -0.14 1.41 16 24 H 0.08 1.56 5.04 -51.93 -0.26 1.30 16 25 C -0.18 -3.62 6.82 37.16 0.25 -3.36 16 26 H 0.04 0.88 6.98 -51.93 -0.36 0.52 16 27 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.09 2.46 5.94 -51.93 -0.31 2.15 16 30 H 0.04 0.85 5.49 -51.93 -0.29 0.57 16 31 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.04 0.90 4.44 -51.93 -0.23 0.67 16 33 H 0.07 1.59 7.76 -51.93 -0.40 1.19 16 34 H 0.02 0.26 6.27 -51.93 -0.33 -0.07 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.34 3.99 8.99 -39.29 -0.35 3.64 16 37 H 0.33 3.57 9.08 -39.30 -0.36 3.21 16 38 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.05 0.55 6.40 -51.93 -0.33 0.22 16 41 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.05 1.02 4.42 -51.93 -0.23 0.79 16 44 H 0.02 0.44 8.13 -51.93 -0.42 0.02 16 45 H 0.09 2.08 5.21 -51.93 -0.27 1.81 16 LS Contribution 315.35 15.07 4.75 4.75 Total: -1.00 -26.84 315.35 -8.60 -35.44 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -7.65 Total: 9.11 kcal Atomic # 6 Polarization: -17.98 SS G_CDS: -0.27 Total: -18.26 kcal Atomic # 7 Polarization: -46.84 SS G_CDS: -0.41 Total: -47.24 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -26.84 -8.60 -35.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397299524.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.777 kcal (2) G-P(sol) polarization free energy of solvation -26.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds