Wall clock time and date at job start Thu Apr 9 2020 14:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47255 * 2 1 4 4 H 1.08998 * 109.46816 * 303.18310 * 3 2 1 5 5 C 1.50700 * 109.47113 * 183.17780 * 3 2 1 6 6 H 1.07999 * 119.99356 * 239.99666 * 5 3 2 7 7 C 1.37876 * 120.00103 * 59.99852 * 5 3 2 8 8 N 1.31517 * 119.99821 * 0.02562 * 7 5 3 9 9 Si 1.86792 * 119.99980 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47270 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47119 * 120.00191 * 9 7 5 12 12 H 1.48503 * 109.47421 * 240.00231 * 9 7 5 13 13 N 1.46907 * 109.47002 * 63.17867 * 3 2 1 14 14 C 1.46844 * 111.00135 * 65.45182 * 13 3 2 15 15 C 1.53030 * 109.52044 * 185.83985 * 14 13 3 16 16 C 1.53123 * 109.31101 * 300.83936 * 15 14 13 17 17 C 1.53119 * 109.15872 * 57.60121 * 16 15 14 18 18 H 1.09002 * 109.50555 * 62.35776 * 17 16 15 19 19 C 1.52994 * 109.50631 * 182.44486 * 17 16 15 20 20 N 1.46899 * 109.46978 * 294.92013 * 19 17 16 21 21 C 1.46903 * 111.00068 * 170.00180 * 20 19 17 22 22 C 1.46900 * 111.00136 * 293.95090 * 20 19 17 23 23 C 1.46846 * 110.99538 * 189.66823 * 13 3 2 24 24 H 1.09000 * 109.46957 * 300.00271 * 1 2 3 25 25 H 1.08998 * 109.46733 * 59.99961 * 1 2 3 26 26 H 1.09001 * 109.46908 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46957 * 239.99729 * 2 1 3 28 28 H 1.09000 * 109.47184 * 119.99795 * 2 1 3 29 29 H 0.96997 * 119.99717 * 179.97438 * 8 7 5 30 30 H 1.08995 * 109.46057 * 305.85874 * 14 13 3 31 31 H 1.08994 * 109.45826 * 65.82395 * 14 13 3 32 32 H 1.08998 * 109.50873 * 60.76538 * 15 14 13 33 33 H 1.09008 * 109.50353 * 180.84507 * 15 14 13 34 34 H 1.09001 * 109.49626 * 297.71009 * 16 15 14 35 35 H 1.09008 * 109.55972 * 177.52209 * 16 15 14 36 36 H 1.08995 * 109.47629 * 174.91921 * 19 17 16 37 37 H 1.09002 * 109.47416 * 54.91853 * 19 17 16 38 38 H 1.09005 * 109.47087 * 180.02562 * 21 20 19 39 39 H 1.08998 * 109.47537 * 59.99917 * 21 20 19 40 40 H 1.08996 * 109.47009 * 299.99426 * 21 20 19 41 41 H 1.09007 * 109.47388 * 296.05311 * 22 20 19 42 42 H 1.09006 * 109.47088 * 56.04237 * 22 20 19 43 43 H 1.09002 * 109.47825 * 176.04267 * 22 20 19 44 44 H 1.08994 * 109.47143 * 54.13867 * 23 13 3 45 45 H 1.09006 * 109.45965 * 294.16813 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6309 1.9725 -0.8601 5 6 3.5450 1.4432 -0.0788 6 1 4.1267 1.8961 0.7104 7 6 4.1791 0.8657 -1.1583 8 7 3.4706 0.3146 -2.1195 9 14 6.0445 0.8672 -1.2562 10 1 6.6025 1.5448 -0.0585 11 1 6.5386 -0.5322 -1.3078 12 1 6.4754 1.5897 -2.4800 13 7 1.6141 2.1125 1.2361 14 6 2.2509 1.5038 2.4109 15 6 1.6760 2.1273 3.6847 16 6 1.9295 3.6373 3.6684 17 6 1.2984 4.2392 2.4098 18 1 0.2196 4.0851 2.4343 19 6 1.5992 5.7383 2.3544 20 7 0.9371 6.4124 3.4792 21 6 1.3904 7.8046 3.5991 22 6 -0.5244 6.3442 3.3474 23 6 1.8842 3.5545 1.1728 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.9167 -0.0913 -2.8791 30 1 2.0589 0.4309 2.4130 31 1 3.3259 1.6802 2.3734 32 1 0.6032 1.9394 3.7297 33 1 2.1596 1.6860 4.5563 34 1 3.0030 3.8259 3.6635 35 1 1.4830 4.0919 4.5528 36 1 1.2282 6.1489 1.4154 37 1 2.6758 5.8955 2.4194 38 1 0.8850 8.2802 4.4397 39 1 1.1554 8.3437 2.6813 40 1 2.4674 7.8230 3.7657 41 1 -0.8348 6.8908 2.4568 42 1 -0.8331 5.3025 3.2602 43 1 -0.9898 6.7887 4.2272 44 1 1.4260 3.9710 0.2759 45 1 2.9610 3.7212 1.1413 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405100621.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:23:51 Heat of formation + Delta-G solvation = -6.803231 kcal Electronic energy + Delta-G solvation = -20420.413926 eV Core-core repulsion = 17665.193133 eV Total energy + Delta-G solvation = -2755.220793 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -38.90722 -37.08327 -34.48618 -31.91271 -30.87961 -30.56774 -27.59129 -26.57420 -26.04722 -23.79214 -22.57893 -21.93712 -20.87033 -19.10036 -18.80062 -16.24930 -15.48437 -15.37768 -15.17011 -14.61075 -14.30478 -13.87771 -13.42246 -13.19330 -13.16272 -12.62986 -12.61036 -12.36929 -11.97362 -11.71074 -11.70477 -11.45496 -11.24404 -11.21945 -11.03811 -10.84104 -10.62669 -10.37304 -10.20871 -9.97596 -9.93375 -9.62986 -9.52738 -9.16818 -8.98904 -8.33644 -8.28551 -7.02839 -5.95787 -4.08971 3.26421 3.35232 3.38602 4.00719 4.41481 4.93381 5.15314 5.23448 5.28906 5.29116 5.38908 5.49134 5.57497 5.58762 5.76739 5.79902 5.85180 5.91074 6.05664 6.08642 6.22416 6.29351 6.37341 6.43478 6.51480 6.58625 6.62449 6.66875 6.72922 6.85555 6.88563 7.01622 7.09433 7.12818 7.17230 7.23846 7.42454 7.66111 7.80882 8.05056 8.21748 8.39914 8.54675 9.02381 9.58493 11.03049 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.022186 B = 0.006048 C = 0.005397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.764883 B = 4628.571378 C = 5186.939848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.110 4.110 3 C 0.214 3.786 4 H 0.036 0.964 5 C -0.540 4.540 6 H 0.057 0.943 7 C 0.067 3.933 8 N -0.886 5.886 9 Si 0.885 3.115 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.285 1.285 13 N -0.533 5.533 14 C 0.062 3.938 15 C -0.119 4.119 16 C -0.100 4.100 17 C -0.080 4.080 18 H 0.072 0.928 19 C 0.060 3.940 20 N -0.544 5.544 21 C 0.025 3.975 22 C 0.021 3.979 23 C 0.071 3.929 24 H 0.048 0.952 25 H 0.037 0.963 26 H 0.024 0.976 27 H 0.091 0.909 28 H 0.032 0.968 29 H 0.260 0.740 30 H 0.066 0.934 31 H 0.035 0.965 32 H 0.059 0.941 33 H 0.052 0.948 34 H 0.050 0.950 35 H 0.062 0.938 36 H 0.032 0.968 37 H 0.072 0.928 38 H 0.064 0.936 39 H 0.022 0.978 40 H 0.066 0.934 41 H 0.022 0.978 42 H 0.075 0.925 43 H 0.062 0.938 44 H 0.058 0.942 45 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.331 8.958 9.519 14.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.148 4.148 3 C 0.107 3.893 4 H 0.054 0.946 5 C -0.579 4.579 6 H 0.075 0.925 7 C -0.135 4.135 8 N -0.525 5.525 9 Si 0.713 3.287 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.256 5.256 14 C -0.067 4.067 15 C -0.157 4.157 16 C -0.137 4.137 17 C -0.099 4.099 18 H 0.090 0.910 19 C -0.068 4.068 20 N -0.268 5.268 21 C -0.123 4.123 22 C -0.127 4.127 23 C -0.058 4.058 24 H 0.067 0.933 25 H 0.056 0.944 26 H 0.043 0.957 27 H 0.109 0.891 28 H 0.051 0.949 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.053 0.947 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.051 0.949 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.040 0.960 40 H 0.085 0.915 41 H 0.041 0.959 42 H 0.093 0.907 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -5.687 8.553 9.811 14.204 hybrid contribution 1.800 0.527 -1.066 2.157 sum -3.887 9.080 8.745 13.192 Atomic orbital electron populations 1.21703 0.98913 0.98298 1.00573 1.21588 0.92171 0.99208 1.01870 1.19261 0.92712 0.91055 0.86231 0.94630 1.21799 0.92850 1.37248 1.05989 0.92515 1.24907 0.97791 0.95138 0.95622 1.69889 1.34758 1.38086 1.09752 0.86652 0.86439 0.77710 0.77875 1.19982 1.21016 1.21089 1.62338 1.57694 1.01367 1.04246 1.21895 0.96678 0.98544 0.89538 1.21658 1.00934 0.95542 0.97523 1.21437 0.99808 0.95082 0.97411 1.21232 1.00749 0.91956 0.95986 0.90962 1.22190 0.98972 0.94885 0.90796 1.61968 1.06196 1.14832 1.43776 1.22359 1.01195 0.88747 1.00041 1.22436 0.87887 1.02552 0.99810 1.21797 0.98362 0.90038 0.95597 0.93278 0.94367 0.95717 0.89125 0.94880 0.93026 0.91519 0.94666 0.92239 0.92955 0.93120 0.91918 0.94931 0.90993 0.91742 0.95956 0.91537 0.95939 0.90674 0.91894 0.92346 0.94842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 9.79 37.16 0.36 -2.46 16 2 C -0.11 -2.61 5.11 -26.73 -0.14 -2.75 16 3 C 0.21 5.25 1.73 -68.86 -0.12 5.13 16 4 H 0.04 0.98 7.99 -51.93 -0.42 0.56 16 5 C -0.54 -14.38 7.23 -34.44 -0.25 -14.63 16 6 H 0.06 1.54 5.84 -52.49 -0.31 1.23 16 7 C 0.07 1.84 5.30 -17.82 -0.09 1.74 16 8 N -0.89 -24.92 11.30 55.43 0.63 -24.30 16 9 Si 0.89 21.19 29.54 -169.99 -5.02 16.16 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 13 N -0.53 -11.17 3.98 -228.08 -0.91 -12.08 16 14 C 0.06 1.22 4.79 -3.84 -0.02 1.20 16 15 C -0.12 -1.92 6.09 -26.65 -0.16 -2.08 16 16 C -0.10 -1.53 5.15 -26.61 -0.14 -1.67 16 17 C -0.08 -1.25 2.27 -90.54 -0.21 -1.45 16 18 H 0.07 1.15 6.26 -51.93 -0.33 0.82 16 19 C 0.06 0.82 4.35 -3.83 -0.02 0.81 16 20 N -0.54 -6.73 4.53 -251.26 -1.14 -7.87 16 21 C 0.03 0.26 9.57 60.07 0.57 0.83 16 22 C 0.02 0.24 9.41 60.06 0.57 0.80 16 23 C 0.07 1.37 4.47 -3.83 -0.02 1.35 16 24 H 0.05 0.97 7.70 -51.93 -0.40 0.57 16 25 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.09 2.41 5.99 -51.93 -0.31 2.10 16 28 H 0.03 0.78 6.28 -51.93 -0.33 0.45 16 29 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.07 1.37 6.14 -51.93 -0.32 1.05 16 31 H 0.04 0.77 6.39 -51.93 -0.33 0.43 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.05 0.77 8.14 -51.92 -0.42 0.35 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.91 7.83 -51.92 -0.41 0.50 16 36 H 0.03 0.45 8.12 -51.93 -0.42 0.03 16 37 H 0.07 1.01 8.06 -51.93 -0.42 0.59 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 40 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 41 H 0.02 0.24 8.14 -51.92 -0.42 -0.18 16 42 H 0.07 0.88 6.21 -51.93 -0.32 0.56 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.06 1.15 8.02 -51.93 -0.42 0.73 16 45 H 0.03 0.70 7.27 -51.93 -0.38 0.33 16 LS Contribution 333.72 15.07 5.03 5.03 Total: -1.00 -27.18 333.72 -9.52 -36.70 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -8.46 Total: -0.49 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: 0.35 Total: -13.17 kcal Atomic # 7 Polarization: -42.82 SS G_CDS: -1.42 Total: -44.24 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -27.18 -9.52 -36.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405100621.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.902 kcal (2) G-P(sol) polarization free energy of solvation -27.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds