Wall clock time and date at job start Thu Apr 9 2020 14:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31004 * 1 3 3 Si 1.86803 * 120.00285 * 2 1 4 4 H 1.48494 * 109.47317 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47176 * 300.00531 * 3 2 1 6 6 H 1.48504 * 109.46862 * 59.99744 * 3 2 1 7 7 C 1.39584 * 120.00181 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00467 * 180.02562 * 7 2 1 9 9 N 1.36122 * 119.99853 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99793 * 180.02562 * 9 7 2 11 11 O 1.21503 * 120.00347 * 359.97438 * 10 9 7 12 12 C 1.48832 * 119.99758 * 179.97438 * 10 9 7 13 13 O 1.21440 * 120.00115 * 353.38835 * 12 10 9 14 14 N 1.34777 * 120.00035 * 173.39569 * 12 10 9 15 15 C 1.47002 * 121.21077 * 172.59813 * 14 12 10 16 16 C 1.50759 * 108.49549 * 130.66383 * 15 14 12 17 17 O 1.21219 * 119.35565 * 204.24444 * 16 15 14 18 18 N 1.34070 * 121.27882 * 23.96280 * 16 15 14 19 19 C 1.34072 * 123.29564 * 358.03490 * 18 16 15 20 20 O 1.21229 * 119.35375 * 182.26708 * 19 18 16 21 21 C 1.47223 * 121.34683 * 352.39226 * 14 12 10 22 22 H 0.97003 * 120.00040 * 359.97438 * 1 2 3 23 23 H 0.96993 * 119.99961 * 359.97438 * 9 7 2 24 24 H 1.08999 * 109.76465 * 10.82101 * 15 14 12 25 25 H 1.09000 * 109.47811 * 250.33687 * 15 14 12 26 26 H 0.97001 * 118.34892 * 178.00691 * 18 16 15 27 27 H 1.08998 * 109.68879 * 109.81510 * 21 14 12 28 28 H 1.08999 * 109.68150 * 349.25739 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 14 2.2441 1.6177 0.0000 4 1 3.7041 1.3464 -0.0006 5 1 1.8853 2.3965 -1.2124 6 1 1.8853 2.3964 1.2125 7 6 2.0080 -1.2088 -0.0005 8 1 3.0881 -1.2089 -0.0001 9 7 1.3274 -2.3877 -0.0005 10 6 2.0013 -3.5548 -0.0005 11 8 3.2164 -3.5549 -0.0010 12 6 1.2572 -4.8438 0.0000 13 8 0.0489 -4.8473 0.1216 14 7 1.9243 -6.0071 -0.1342 15 6 1.2414 -7.2994 0.0231 16 6 1.5925 -8.1723 -1.1549 17 8 0.8414 -9.0681 -1.4754 18 7 2.7165 -7.9735 -1.8581 19 6 3.5800 -6.9807 -1.6005 20 8 4.5543 -6.8419 -2.3083 21 6 3.3624 -6.0335 -0.4481 22 1 -0.4850 0.8401 0.0004 23 1 0.3575 -2.3877 0.0002 24 1 0.1630 -7.1446 0.0569 25 1 1.5736 -7.7761 0.9453 26 1 2.9152 -8.5786 -2.5897 27 1 3.9218 -6.3786 0.4215 28 1 3.6958 -5.0338 -0.7266 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097270517.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:23:49 Heat of formation + Delta-G solvation = -117.384252 kcal Electronic energy + Delta-G solvation = -18710.815139 eV Core-core repulsion = 15342.040905 eV Total energy + Delta-G solvation = -3368.774235 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.073 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.56665 -39.64681 -38.93911 -37.49101 -35.96342 -34.71627 -34.04459 -31.67211 -29.46128 -27.76622 -25.83324 -23.55244 -22.76494 -19.97666 -19.45411 -18.54961 -18.05547 -17.57965 -16.58519 -16.35796 -16.12791 -15.35461 -15.19547 -14.75540 -14.46888 -14.33800 -14.08137 -13.50264 -13.21837 -12.98399 -12.52313 -12.13323 -11.87588 -11.35942 -11.20669 -10.69347 -10.55722 -10.51850 -10.38553 -10.35640 -9.91763 -8.90718 -8.46835 -8.31795 -6.88870 -4.20219 1.35089 2.03994 2.39696 2.64367 2.88690 3.02578 3.08291 3.15296 3.71824 3.86836 3.97058 4.43810 4.61562 4.95297 4.99507 5.27272 5.31608 5.61551 5.78752 5.84527 6.30752 6.71006 7.06384 7.11595 7.17598 7.53766 7.68094 8.00290 8.24910 8.72284 9.05858 9.59056 10.24698 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.036513 B = 0.005423 C = 0.004903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.674678 B = 5162.386316 C = 5709.529271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.034 3.966 3 Si 0.942 3.058 4 H -0.261 1.261 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.304 4.304 8 H 0.119 0.881 9 N -0.482 5.482 10 C 0.381 3.619 11 O -0.588 6.588 12 C 0.525 3.475 13 O -0.529 6.529 14 N -0.608 5.608 15 C 0.091 3.909 16 C 0.523 3.477 17 O -0.501 6.501 18 N -0.676 5.676 19 C 0.515 3.485 20 O -0.495 6.495 21 C 0.067 3.933 22 H 0.284 0.716 23 H 0.406 0.594 24 H 0.140 0.860 25 H 0.115 0.885 26 H 0.407 0.593 27 H 0.112 0.888 28 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.054 -9.318 0.826 9.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.175 4.175 3 Si 0.766 3.234 4 H -0.184 1.184 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.435 4.435 8 H 0.137 0.863 9 N -0.114 5.114 10 C 0.167 3.833 11 O -0.480 6.480 12 C 0.312 3.688 13 O -0.404 6.404 14 N -0.347 5.347 15 C -0.035 4.035 16 C 0.310 3.690 17 O -0.373 6.373 18 N -0.341 5.341 19 C 0.303 3.697 20 O -0.366 6.366 21 C -0.057 4.057 22 H 0.095 0.905 23 H 0.242 0.758 24 H 0.157 0.843 25 H 0.133 0.867 26 H 0.246 0.754 27 H 0.130 0.870 28 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 3.039 -9.379 0.533 9.874 hybrid contribution -0.183 0.222 -0.307 0.421 sum 2.856 -9.157 0.226 9.595 Atomic orbital electron populations 1.69478 1.06687 1.29853 1.43452 1.25687 0.95673 1.00851 0.95286 0.85611 0.79977 0.79511 0.78261 1.18439 1.20097 1.20088 1.20052 0.94286 0.81573 1.47552 0.86345 1.41604 1.10664 1.04269 1.54841 1.18609 0.87719 0.83821 0.93158 1.90300 1.12707 1.84691 1.60274 1.20807 0.87131 0.85110 0.75703 1.90728 1.13987 1.87073 1.48631 1.47895 1.09747 1.04756 1.72315 1.21952 1.02968 0.82949 0.95583 1.21293 0.79536 0.84308 0.83847 1.90796 1.47720 1.31998 1.66821 1.45015 1.23023 1.31334 1.34755 1.21794 0.81404 0.80025 0.86451 1.90795 1.27981 1.70499 1.47280 1.23360 0.81596 1.05518 0.95270 0.90539 0.75815 0.84261 0.86747 0.75353 0.87022 0.79094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -21.32 13.03 55.53 0.72 -20.60 15 2 C 0.03 0.81 5.51 -17.40 -0.10 0.72 15 3 Si 0.94 18.61 29.56 -169.99 -5.02 13.59 15 4 H -0.26 -5.12 7.11 56.52 0.40 -4.71 15 5 H -0.28 -5.39 7.11 56.52 0.40 -4.99 15 6 H -0.28 -5.37 7.11 56.52 0.40 -4.96 15 7 C -0.30 -7.64 9.67 -15.15 -0.15 -7.78 15 8 H 0.12 3.02 7.15 -52.48 -0.38 2.65 15 9 N -0.48 -11.66 5.24 -11.59 -0.06 -11.72 15 10 C 0.38 8.49 7.68 -11.87 -0.09 8.40 15 11 O -0.59 -13.52 12.79 5.36 0.07 -13.45 15 12 C 0.52 10.07 7.74 -11.87 -0.09 9.98 15 13 O -0.53 -11.01 15.99 5.42 0.09 -10.92 15 14 N -0.61 -9.14 3.03 -176.11 -0.53 -9.68 15 15 C 0.09 1.09 6.58 -4.89 -0.03 1.05 15 16 C 0.52 6.56 7.89 -11.27 -0.09 6.47 15 17 O -0.50 -7.46 17.87 5.61 0.10 -7.36 15 18 N -0.68 -8.09 5.06 -11.68 -0.06 -8.15 15 19 C 0.51 7.05 7.89 -11.28 -0.09 6.96 15 20 O -0.49 -8.11 17.87 5.60 0.10 -8.01 15 21 C 0.07 0.93 6.05 -4.77 -0.03 0.90 15 22 H 0.28 6.53 8.30 -40.82 -0.34 6.19 15 23 H 0.41 9.95 7.37 -40.82 -0.30 9.64 15 24 H 0.14 1.77 7.10 -51.93 -0.37 1.40 15 25 H 0.11 0.98 8.14 -51.93 -0.42 0.56 15 26 H 0.41 4.32 8.76 -40.82 -0.36 3.96 15 27 H 0.11 1.24 8.14 -51.93 -0.42 0.82 15 28 H 0.19 3.32 4.58 -53.58 -0.25 3.07 15 LS Contribution 260.31 15.07 3.92 3.92 Total: -1.00 -29.08 260.31 -2.97 -32.05 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -1.63 Total: 13.63 kcal Atomic # 6 Polarization: 27.36 SS G_CDS: -0.66 Total: 26.70 kcal Atomic # 7 Polarization: -50.21 SS G_CDS: 0.07 Total: -50.14 kcal Atomic # 8 Polarization: -40.10 SS G_CDS: 0.36 Total: -39.75 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.02 Total: 13.59 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -29.08 -2.97 -32.05 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097270517.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.333 kcal (2) G-P(sol) polarization free energy of solvation -29.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds