Wall clock time and date at job start Thu Apr 9 2020 14:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31004 * 1 3 3 Si 1.86803 * 120.00285 * 2 1 4 4 H 1.48494 * 109.47317 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47176 * 300.00531 * 3 2 1 6 6 H 1.48504 * 109.46862 * 59.99744 * 3 2 1 7 7 C 1.39584 * 120.00181 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00467 * 180.02562 * 7 2 1 9 9 N 1.36122 * 119.99853 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99793 * 180.02562 * 9 7 2 11 11 O 1.21503 * 120.00347 * 359.97438 * 10 9 7 12 12 C 1.48832 * 119.99758 * 179.97438 * 10 9 7 13 13 O 1.21440 * 120.00115 * 353.38835 * 12 10 9 14 14 N 1.34777 * 120.00035 * 173.39569 * 12 10 9 15 15 C 1.47002 * 121.21077 * 172.59813 * 14 12 10 16 16 C 1.50759 * 108.49549 * 130.66383 * 15 14 12 17 17 O 1.21219 * 119.35565 * 204.24444 * 16 15 14 18 18 N 1.34070 * 121.27882 * 23.96280 * 16 15 14 19 19 C 1.34072 * 123.29564 * 358.03490 * 18 16 15 20 20 O 1.21229 * 119.35375 * 182.26708 * 19 18 16 21 21 C 1.47223 * 121.34683 * 352.39226 * 14 12 10 22 22 H 0.97003 * 120.00040 * 359.97438 * 1 2 3 23 23 H 0.96993 * 119.99961 * 359.97438 * 9 7 2 24 24 H 1.08999 * 109.76465 * 10.82101 * 15 14 12 25 25 H 1.09000 * 109.47811 * 250.33687 * 15 14 12 26 26 H 0.97001 * 118.34892 * 178.00691 * 18 16 15 27 27 H 1.08998 * 109.68879 * 109.81510 * 21 14 12 28 28 H 1.08999 * 109.68150 * 349.25739 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 14 2.2441 1.6177 0.0000 4 1 3.7041 1.3464 -0.0006 5 1 1.8853 2.3965 -1.2124 6 1 1.8853 2.3964 1.2125 7 6 2.0080 -1.2088 -0.0005 8 1 3.0881 -1.2089 -0.0001 9 7 1.3274 -2.3877 -0.0005 10 6 2.0013 -3.5548 -0.0005 11 8 3.2164 -3.5549 -0.0010 12 6 1.2572 -4.8438 0.0000 13 8 0.0489 -4.8473 0.1216 14 7 1.9243 -6.0071 -0.1342 15 6 1.2414 -7.2994 0.0231 16 6 1.5925 -8.1723 -1.1549 17 8 0.8414 -9.0681 -1.4754 18 7 2.7165 -7.9735 -1.8581 19 6 3.5800 -6.9807 -1.6005 20 8 4.5543 -6.8419 -2.3083 21 6 3.3624 -6.0335 -0.4481 22 1 -0.4850 0.8401 0.0004 23 1 0.3575 -2.3877 0.0002 24 1 0.1630 -7.1446 0.0569 25 1 1.5736 -7.7761 0.9453 26 1 2.9152 -8.5786 -2.5897 27 1 3.9218 -6.3786 0.4215 28 1 3.6958 -5.0338 -0.7266 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097270517.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:23:49 Heat of formation + Delta-G solvation = -142.150423 kcal Electronic energy + Delta-G solvation = -18711.889081 eV Core-core repulsion = 15342.040905 eV Total energy + Delta-G solvation = -3369.848177 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.073 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.75365 -41.19672 -40.10812 -39.18258 -37.36085 -36.26493 -35.40691 -33.48847 -30.60458 -29.13414 -27.55249 -24.77822 -24.25093 -21.39722 -20.77088 -20.17362 -19.37453 -18.87962 -17.83573 -17.75169 -17.61923 -16.84119 -16.66087 -16.13973 -15.78349 -15.66223 -15.62775 -14.98555 -14.64568 -14.48484 -13.86330 -13.67409 -13.24305 -12.94477 -12.54518 -12.43836 -12.20465 -12.06007 -11.64992 -11.52428 -11.50397 -10.31216 -10.14958 -10.03105 -8.67443 -6.10491 0.25374 0.44014 1.12647 1.44734 1.46625 1.57116 1.61151 1.74632 2.25209 2.29419 2.60492 2.89240 3.13986 3.48367 3.86621 4.03808 4.23614 4.31295 4.58442 4.84438 5.00691 5.27864 5.55867 5.62966 5.75440 6.08846 6.27551 6.59506 6.61679 6.90562 7.24579 7.76433 8.47774 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.036513 B = 0.005423 C = 0.004903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.674678 B = 5162.386316 C = 5709.529271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C -0.002 4.002 3 Si 1.007 2.993 4 H -0.261 1.261 5 H -0.270 1.270 6 H -0.268 1.268 7 C -0.338 4.338 8 H 0.106 0.894 9 N -0.502 5.502 10 C 0.386 3.614 11 O -0.595 6.595 12 C 0.533 3.467 13 O -0.545 6.545 14 N -0.595 5.595 15 C 0.092 3.908 16 C 0.533 3.467 17 O -0.520 6.520 18 N -0.666 5.666 19 C 0.529 3.471 20 O -0.521 6.521 21 C 0.068 3.932 22 H 0.289 0.711 23 H 0.401 0.599 24 H 0.137 0.863 25 H 0.162 0.838 26 H 0.416 0.584 27 H 0.151 0.849 28 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.599 -10.402 1.272 11.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.207 4.207 3 Si 0.828 3.172 4 H -0.185 1.185 5 H -0.195 1.195 6 H -0.193 1.193 7 C -0.468 4.468 8 H 0.124 0.876 9 N -0.135 5.135 10 C 0.172 3.828 11 O -0.486 6.486 12 C 0.319 3.681 13 O -0.422 6.422 14 N -0.333 5.333 15 C -0.031 4.031 16 C 0.322 3.678 17 O -0.393 6.393 18 N -0.331 5.331 19 C 0.318 3.682 20 O -0.394 6.394 21 C -0.056 4.056 22 H 0.100 0.900 23 H 0.236 0.764 24 H 0.154 0.846 25 H 0.179 0.821 26 H 0.257 0.743 27 H 0.168 0.832 28 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 3.605 -10.508 0.972 11.152 hybrid contribution -0.298 0.322 -0.464 0.639 sum 3.307 -10.186 0.508 10.721 Atomic orbital electron populations 1.69538 1.07838 1.30879 1.44589 1.26508 0.96418 1.03494 0.94311 0.84669 0.78528 0.75461 0.78518 1.18465 1.19490 1.19279 1.20083 0.93946 0.82718 1.50095 0.87585 1.41680 1.10368 1.04796 1.56614 1.19275 0.87893 0.84733 0.90928 1.90331 1.13251 1.85575 1.59438 1.20124 0.86637 0.85209 0.76135 1.90733 1.14428 1.87354 1.49693 1.47773 1.10198 1.04791 1.70508 1.22269 1.02655 0.80978 0.97246 1.21276 0.79097 0.83885 0.83562 1.90813 1.48264 1.33026 1.67215 1.44856 1.22499 1.30960 1.34830 1.21543 0.81018 0.79934 0.85704 1.90804 1.29261 1.71274 1.48054 1.23257 0.81096 1.04261 0.96941 0.90044 0.76384 0.84552 0.82085 0.74319 0.83183 0.81980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -45.04 13.03 21.76 0.28 -44.76 15 2 C 0.00 -0.10 5.51 85.14 0.47 0.37 15 3 Si 1.01 38.28 29.56 68.60 2.03 40.30 15 4 H -0.26 -9.79 7.11 99.48 0.71 -9.08 15 5 H -0.27 -9.93 7.11 99.48 0.71 -9.22 15 6 H -0.27 -9.77 7.11 99.48 0.71 -9.07 15 7 C -0.34 -17.44 9.67 84.35 0.82 -16.62 15 8 H 0.11 5.57 7.15 -2.91 -0.02 5.55 15 9 N -0.50 -24.86 5.24 -308.87 -1.62 -26.48 15 10 C 0.39 17.24 7.68 87.08 0.67 17.91 15 11 O -0.60 -27.32 12.79 -3.72 -0.05 -27.37 15 12 C 0.53 19.85 7.74 87.08 0.67 20.53 15 13 O -0.55 -22.20 15.99 -3.53 -0.06 -22.26 15 14 N -0.60 -16.40 3.03 -829.42 -2.51 -18.91 15 15 C 0.09 1.88 6.58 85.56 0.56 2.44 15 16 C 0.53 11.76 7.89 87.79 0.69 12.45 15 17 O -0.52 -14.10 17.87 -2.84 -0.05 -14.15 15 18 N -0.67 -14.16 5.06 -428.47 -2.17 -16.33 15 19 C 0.53 13.25 7.89 87.78 0.69 13.95 15 20 O -0.52 -16.26 17.87 -2.87 -0.05 -16.31 15 21 C 0.07 1.74 6.05 85.51 0.52 2.26 15 22 H 0.29 13.43 8.30 -92.71 -0.77 12.66 15 23 H 0.40 20.26 7.37 -92.71 -0.68 19.58 15 24 H 0.14 3.06 7.10 -2.39 -0.02 3.04 15 25 H 0.16 1.93 8.14 -2.39 -0.02 1.91 15 26 H 0.42 7.82 8.76 -92.71 -0.81 7.01 15 27 H 0.15 2.76 8.14 -2.39 -0.02 2.74 15 28 H 0.16 5.43 4.58 -28.51 -0.13 5.30 15 Total: -1.00 -63.11 260.31 0.55 -62.56 By element: Atomic # 1 Polarization: 30.77 SS G_CDS: -0.35 Total: 30.42 kcal Atomic # 6 Polarization: 48.18 SS G_CDS: 5.09 Total: 53.28 kcal Atomic # 7 Polarization: -100.46 SS G_CDS: -6.02 Total: -106.48 kcal Atomic # 8 Polarization: -79.88 SS G_CDS: -0.21 Total: -80.08 kcal Atomic # 14 Polarization: 38.28 SS G_CDS: 2.03 Total: 40.30 kcal Total: -63.11 0.55 -62.56 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097270517.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.586 kcal (2) G-P(sol) polarization free energy of solvation -63.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds