Wall clock time and date at job start Thu Apr 9 2020 14:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50702 * 110.56256 * 2 1 4 4 O 1.21288 * 119.99847 * 118.77795 * 3 2 1 5 5 N 1.34777 * 119.99884 * 298.77115 * 3 2 1 6 6 C 1.46504 * 119.99779 * 180.02562 * 5 3 2 7 7 C 1.52995 * 109.46847 * 180.02562 * 6 5 3 8 8 C 1.53001 * 109.47264 * 180.02562 * 7 6 5 9 9 C 1.50700 * 109.47510 * 179.97438 * 8 7 6 10 10 H 1.07998 * 119.99657 * 0.02562 * 9 8 7 11 11 C 1.37874 * 119.99841 * 180.02562 * 9 8 7 12 12 N 1.31506 * 120.00436 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99579 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47335 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.47073 * 119.99934 * 13 11 9 16 16 H 1.48501 * 109.47496 * 239.99588 * 13 11 9 17 17 C 1.54475 * 110.51164 * 237.32015 * 2 1 3 18 18 O 1.44426 * 104.80234 * 217.37276 * 17 2 1 19 19 C 1.44427 * 105.27356 * 40.51337 * 18 17 2 20 20 C 1.54474 * 104.80458 * 319.48632 * 19 18 17 21 21 H 1.08999 * 110.50826 * 265.33142 * 20 19 18 22 22 N 1.46895 * 110.62653 * 142.68079 * 20 19 18 23 23 H 1.09001 * 109.46675 * 181.22740 * 1 2 3 24 24 H 1.09005 * 109.47168 * 301.22131 * 1 2 3 25 25 H 1.08999 * 109.47233 * 61.22896 * 1 2 3 26 26 H 0.96999 * 120.00114 * 0.02562 * 5 3 2 27 27 H 1.08996 * 109.46921 * 300.00028 * 6 5 3 28 28 H 1.09000 * 109.46762 * 60.00211 * 6 5 3 29 29 H 1.09002 * 109.46885 * 299.99929 * 7 6 5 30 30 H 1.09004 * 109.47621 * 59.99752 * 7 6 5 31 31 H 1.09000 * 109.46930 * 300.00252 * 8 7 6 32 32 H 1.09004 * 109.47131 * 59.99297 * 8 7 6 33 33 H 0.96997 * 120.00279 * 179.97438 * 12 11 9 34 34 H 1.08996 * 110.37353 * 98.54616 * 17 2 1 35 35 H 1.08994 * 110.37405 * 336.20714 * 17 2 1 36 36 H 1.09006 * 110.37325 * 78.32267 * 19 18 17 37 37 H 1.09004 * 110.37134 * 200.64830 * 19 18 17 38 38 H 1.00901 * 111.00155 * 65.29355 * 22 20 19 39 39 H 1.00903 * 110.99540 * 189.24038 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0593 1.4110 0.0000 4 8 2.7457 1.8012 0.9207 5 7 1.7700 2.2393 -1.0231 6 6 2.2850 3.6108 -1.0234 7 6 1.8134 4.3323 -2.2874 8 6 2.3518 5.7645 -2.2881 9 6 1.8879 6.4751 -3.5334 10 1 1.2704 5.9571 -4.2523 11 6 2.2517 7.7864 -3.7549 12 7 3.0032 8.4172 -2.8793 13 14 1.6772 8.6669 -5.2990 14 1 0.8492 7.7438 -6.1162 15 1 0.8680 9.8530 -4.9203 16 1 2.8571 9.1040 -6.0877 17 6 2.0713 -0.7812 -1.2178 18 8 3.2399 -1.4713 -0.7238 19 6 2.8757 -1.9421 0.5922 20 6 2.0714 -0.7813 1.2181 21 1 2.7219 -0.1471 1.8203 22 7 0.9632 -1.2992 2.0314 23 1 -0.3633 -1.0275 0.0220 24 1 -0.3634 0.5327 0.8789 25 1 -0.3634 0.4946 -0.9008 26 1 1.2208 1.9273 -1.7593 27 1 1.9142 4.1383 -0.1446 28 1 3.3746 3.5897 -1.0017 29 1 2.1839 3.8049 -3.1664 30 1 0.7238 4.3534 -2.3088 31 1 1.9818 6.2921 -1.4090 32 1 3.4414 5.7431 -2.2669 33 1 3.2595 9.3396 -3.0354 34 1 2.3464 -0.0939 -2.0177 35 1 1.3286 -1.4969 -1.5701 36 1 2.2564 -2.8360 0.5175 37 1 3.7689 -2.1467 1.1826 38 1 1.3086 -1.8110 2.8295 39 1 0.3468 -0.5539 2.3191 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085395607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:30:35 Heat of formation + Delta-G solvation = -96.196265 kcal Electronic energy + Delta-G solvation = -19311.234440 eV Core-core repulsion = 16253.159607 eV Total energy + Delta-G solvation = -3058.074833 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 256.157 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.90644 -38.51518 -35.55217 -34.93454 -33.50793 -32.38635 -30.88619 -28.02182 -26.89460 -26.57473 -23.91142 -22.95656 -21.25981 -20.65069 -19.09241 -17.63028 -16.45147 -16.39183 -16.08138 -15.93187 -15.37346 -15.20849 -14.89953 -14.45667 -14.35008 -13.77514 -13.36556 -12.94364 -12.51362 -12.31833 -12.19454 -11.90074 -11.85887 -11.76890 -11.34768 -11.08989 -10.93554 -10.76354 -10.59458 -10.20594 -9.90375 -9.78161 -9.38014 -9.12417 -9.01584 -8.84439 -8.39567 -6.03812 -4.07046 2.64774 3.21954 3.28736 3.36407 3.39917 3.69131 4.02082 4.22843 4.42644 4.47638 4.64300 4.84499 5.02201 5.08497 5.29247 5.31302 5.32142 5.46344 5.51309 5.60577 5.69039 5.71916 5.73502 5.93146 6.11884 6.41269 6.42410 6.55813 6.76966 6.78975 6.96643 7.04335 7.61155 7.62084 7.73149 7.94729 8.28356 8.36203 8.99822 9.57415 11.07526 Molecular weight = 256.16amu Principal moments of inertia in cm(-1) A = 0.044752 B = 0.003488 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.524489 B = 8024.910774 C = 8104.080043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.115 4.115 3 C 0.522 3.478 4 O -0.541 6.541 5 N -0.721 5.721 6 C 0.116 3.884 7 C -0.121 4.121 8 C 0.023 3.977 9 C -0.522 4.522 10 H 0.056 0.944 11 C 0.056 3.944 12 N -0.894 5.894 13 Si 0.893 3.107 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.284 1.284 17 C 0.060 3.940 18 O -0.368 6.368 19 C 0.052 3.948 20 C 0.065 3.935 21 H 0.079 0.921 22 N -0.837 5.837 23 H 0.083 0.917 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.398 0.602 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.019 0.981 32 H 0.019 0.981 33 H 0.261 0.739 34 H 0.096 0.904 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.091 0.909 38 H 0.343 0.657 39 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.418 -20.801 6.839 22.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.119 4.119 3 C 0.307 3.693 4 O -0.418 6.418 5 N -0.371 5.371 6 C -0.007 4.007 7 C -0.159 4.159 8 C -0.014 4.014 9 C -0.560 4.560 10 H 0.074 0.926 11 C -0.145 4.145 12 N -0.533 5.533 13 Si 0.721 3.279 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.210 1.210 17 C -0.017 4.017 18 O -0.286 6.286 19 C -0.025 4.025 20 C -0.047 4.047 21 H 0.096 0.904 22 N -0.369 5.369 23 H 0.102 0.898 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.232 0.768 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.037 0.963 32 H 0.037 0.963 33 H 0.070 0.930 34 H 0.114 0.886 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.109 0.891 38 H 0.155 0.845 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -4.812 -20.760 6.764 22.358 hybrid contribution -0.321 1.192 -0.294 1.269 sum -5.133 -19.569 6.469 21.240 Atomic orbital electron populations 1.21630 0.90652 1.03873 1.02185 1.22159 0.98689 0.93398 0.97623 1.20157 0.80140 0.86667 0.82361 1.90670 1.38563 1.76800 1.35811 1.46161 1.53539 1.14063 1.23365 1.21680 0.99094 0.79543 1.00344 1.21892 1.00355 0.99398 0.94221 1.19036 0.96586 0.88362 0.97445 1.21235 1.31938 0.96982 1.05891 0.92570 1.25032 0.95139 0.97630 0.96684 1.69971 1.36509 1.11518 1.35266 0.86523 0.78515 0.79650 0.83225 1.19736 1.20999 1.20977 1.23510 0.88307 0.94968 0.94921 1.89172 1.34897 1.73685 1.30812 1.23477 0.99011 0.96099 0.83923 1.22706 0.92477 0.95192 0.94327 0.90367 1.58904 1.19790 1.31244 1.27002 0.89813 0.91998 0.92063 0.76811 0.91759 0.91669 0.92662 0.92697 0.96293 0.96251 0.92962 0.88633 0.90695 0.91032 0.89089 0.84461 0.83868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.06 7.29 37.16 0.27 -0.79 16 2 C -0.11 -1.24 0.88 -154.09 -0.14 -1.38 16 3 C 0.52 7.68 6.49 -10.98 -0.07 7.61 16 4 O -0.54 -10.11 15.29 5.55 0.08 -10.02 16 5 N -0.72 -10.19 5.19 -60.29 -0.31 -10.50 16 6 C 0.12 2.03 5.67 -4.04 -0.02 2.01 16 7 C -0.12 -2.33 5.27 -26.73 -0.14 -2.47 16 8 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 9 C -0.52 -14.52 9.11 -34.44 -0.31 -14.84 16 10 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 11 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 12 N -0.89 -26.78 13.29 55.43 0.74 -26.05 16 13 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 14 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 15 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 17 C 0.06 0.63 6.70 37.93 0.25 0.88 16 18 O -0.37 -4.62 11.65 -35.23 -0.41 -5.03 16 19 C 0.05 0.52 7.36 37.93 0.28 0.80 16 20 C 0.07 0.68 3.82 -66.15 -0.25 0.42 16 21 H 0.08 1.02 6.51 -51.93 -0.34 0.68 16 22 N -0.84 -6.40 8.06 -3.34 -0.03 -6.42 16 23 H 0.08 0.64 7.69 -51.93 -0.40 0.24 16 24 H 0.06 0.53 7.11 -51.93 -0.37 0.16 16 25 H 0.06 0.46 7.78 -51.93 -0.40 0.06 16 26 H 0.40 4.50 7.88 -40.82 -0.32 4.18 16 27 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 34 H 0.10 0.98 7.44 -51.93 -0.39 0.59 16 35 H 0.07 0.62 7.87 -51.93 -0.41 0.21 16 36 H 0.07 0.62 8.06 -51.93 -0.42 0.20 16 37 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.34 2.06 9.08 -39.29 -0.36 1.70 16 39 H 0.35 2.57 7.39 -39.29 -0.29 2.28 16 LS Contribution 317.21 15.07 4.78 4.78 Total: -1.00 -32.81 317.21 -6.73 -39.54 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -6.19 Total: 3.11 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: -0.37 Total: -5.79 kcal Atomic # 7 Polarization: -43.37 SS G_CDS: 0.40 Total: -42.97 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: -0.33 Total: -15.05 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.81 -6.73 -39.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085395607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.654 kcal (2) G-P(sol) polarization free energy of solvation -32.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds