Wall clock time and date at job start Thu Apr 9 2020 14:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86806 * 120.00275 * 2 1 4 4 H 1.48505 * 109.46986 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47087 * 299.99964 * 3 2 1 6 6 H 1.48495 * 109.46808 * 60.00113 * 3 2 1 7 7 C 1.37879 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00470 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99682 * 0.02562 * 7 2 1 10 10 C 1.53498 * 114.20537 * 179.97438 * 9 7 2 11 11 N 1.47066 * 87.98345 * 139.85203 * 10 9 7 12 12 C 1.34778 * 136.05587 * 152.84348 * 11 10 9 13 13 O 1.21275 * 120.00295 * 4.47480 * 12 11 10 14 14 C 1.50708 * 120.00072 * 184.47602 * 12 11 10 15 15 O 1.42895 * 108.73356 * 181.88010 * 14 12 11 16 16 C 1.52938 * 108.88704 * 300.38975 * 14 12 11 17 17 C 1.55150 * 108.96366 * 150.89141 * 16 14 12 18 18 S 1.83995 * 100.90804 * 318.56314 * 17 16 14 19 19 C 1.53709 * 108.88540 * 63.37134 * 14 12 11 20 20 C 1.47069 * 87.88624 * 333.10323 * 11 10 9 21 21 H 0.97002 * 120.00049 * 359.97438 * 1 2 3 22 22 H 1.08999 * 113.28427 * 46.93588 * 9 7 2 23 23 H 1.09004 * 113.46726 * 25.08001 * 10 9 7 24 24 H 1.09003 * 113.52544 * 254.64194 * 10 9 7 25 25 H 0.96701 * 113.99953 * 297.84819 * 15 14 12 26 26 H 1.09010 * 109.60296 * 30.96219 * 16 14 12 27 27 H 1.08999 * 109.60465 * 270.82528 * 16 14 12 28 28 H 1.08997 * 111.13200 * 200.65027 * 17 16 14 29 29 H 1.09004 * 111.12937 * 76.47134 * 17 16 14 30 30 H 1.08995 * 110.34481 * 117.51154 * 19 14 12 31 31 H 1.08993 * 110.34105 * 355.25107 * 19 14 12 32 32 H 1.09000 * 113.46449 * 141.67950 * 20 11 10 33 33 H 1.08996 * 113.46789 * 272.11347 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0017 10 6 2.1486 -3.7442 -0.0028 11 7 1.2071 -4.3601 0.9443 12 6 0.8308 -5.6150 1.2610 13 8 1.3833 -6.5626 0.7438 14 6 -0.2766 -5.8406 2.2580 15 8 -0.4463 -7.2470 2.4450 16 6 0.1220 -5.2083 3.5923 17 6 -1.1614 -4.7703 4.3461 18 16 -2.1503 -4.0602 2.9665 19 6 -1.5804 -5.2526 1.6949 20 6 0.8521 -3.0040 1.3890 21 1 -0.4850 0.8401 0.0004 22 1 0.4437 -2.5299 -0.7335 23 1 3.1371 -3.5671 0.4212 24 1 2.1884 -4.2511 -0.9670 25 1 -0.7103 -7.7212 1.6446 26 1 0.7541 -4.3389 3.4107 27 1 0.6686 -5.9354 4.1927 28 1 -0.9366 -4.0141 5.0982 29 1 -1.6671 -5.6270 4.7917 30 1 -2.3214 -6.0395 1.5544 31 1 -1.3886 -4.7390 0.7529 32 1 -0.2093 -2.8822 1.6056 33 1 1.4915 -2.6277 2.1874 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598030607.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:43:35 Heat of formation + Delta-G solvation = -46.354191 kcal Electronic energy + Delta-G solvation = -17795.532738 eV Core-core repulsion = 14948.820334 eV Total energy + Delta-G solvation = -2846.712404 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 257.087 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.25245 -38.03323 -36.45809 -33.70674 -32.65709 -29.99661 -28.74163 -25.91538 -25.07140 -24.61775 -21.86896 -20.18721 -18.82257 -17.27525 -16.98037 -16.63104 -16.06587 -15.40011 -14.82982 -14.63039 -14.37099 -14.04969 -13.36052 -13.10170 -12.86195 -12.46444 -12.24290 -11.96231 -11.76641 -11.62710 -11.45555 -11.25778 -10.98333 -10.96238 -10.80938 -10.38767 -10.02870 -9.49931 -9.26069 -8.93321 -8.60847 -8.03108 -7.51199 -6.19336 -4.25530 1.80126 2.23819 2.89097 3.21826 3.30469 3.32840 3.38703 4.02201 4.31563 4.34924 4.52256 4.75253 4.95000 5.06424 5.13341 5.35673 5.45413 5.61978 5.72396 5.88372 5.99533 6.10795 6.18381 6.36982 6.49853 6.60813 6.84950 7.42405 7.50644 7.77155 8.14645 8.32648 8.54243 8.78272 9.41520 10.89993 Molecular weight = 257.09amu Principal moments of inertia in cm(-1) A = 0.026288 B = 0.006865 C = 0.005907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.880549 B = 4077.497887 C = 4739.231966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.070 3.930 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.520 4.520 8 H 0.064 0.936 9 C 0.036 3.964 10 C 0.098 3.902 11 N -0.636 5.636 12 C 0.509 3.491 13 O -0.555 6.555 14 C 0.126 3.874 15 O -0.536 6.536 16 C -0.115 4.115 17 C -0.069 4.069 18 S -0.256 6.256 19 C -0.101 4.101 20 C 0.087 3.913 21 H 0.264 0.736 22 H 0.067 0.933 23 H 0.075 0.925 24 H 0.057 0.943 25 H 0.384 0.616 26 H 0.101 0.899 27 H 0.096 0.904 28 H 0.112 0.888 29 H 0.094 0.906 30 H 0.103 0.897 31 H 0.112 0.888 32 H 0.081 0.919 33 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.126 -7.631 6.410 10.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.134 4.134 3 Si 0.721 3.279 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.558 4.558 8 H 0.082 0.918 9 C 0.017 3.983 10 C -0.023 4.023 11 N -0.370 5.370 12 C 0.296 3.704 13 O -0.435 6.435 14 C 0.080 3.920 15 O -0.342 6.342 16 C -0.154 4.154 17 C -0.217 4.217 18 S -0.029 6.029 19 C -0.249 4.249 20 C -0.035 4.035 21 H 0.074 0.926 22 H 0.085 0.915 23 H 0.093 0.907 24 H 0.075 0.925 25 H 0.233 0.767 26 H 0.119 0.881 27 H 0.114 0.886 28 H 0.130 0.870 29 H 0.112 0.888 30 H 0.121 0.879 31 H 0.130 0.870 32 H 0.100 0.900 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.687 -7.138 6.757 10.497 hybrid contribution 1.001 -0.200 -0.491 1.133 sum -2.686 -7.338 6.266 10.016 Atomic orbital electron populations 1.69955 1.05983 1.27068 1.48666 1.25014 0.94855 0.99333 0.94193 0.86508 0.80186 0.83430 0.77748 1.19605 1.20874 1.20860 1.20900 0.92994 0.89453 1.52413 0.91817 1.20275 0.94565 0.91117 0.92315 1.23438 0.94497 0.93120 0.91289 1.50090 1.41832 1.04863 1.40208 1.20614 0.84823 0.81976 0.82955 1.90660 1.56976 1.40912 1.54941 1.21670 0.91890 0.83422 0.94978 1.86555 1.91409 1.17215 1.38993 1.22364 0.98321 1.01922 0.92764 1.24362 0.96027 1.03264 0.98092 1.88075 1.63371 1.44273 1.07204 1.24776 0.97813 1.00859 1.01495 1.23856 1.01585 0.76008 1.02085 0.92626 0.91491 0.90727 0.92452 0.76669 0.88089 0.88558 0.86954 0.88769 0.87897 0.86966 0.90040 0.90793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.54 13.26 55.43 0.74 -22.80 16 2 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.89 19.79 29.54 -169.99 -5.02 14.77 16 4 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.52 -12.93 8.84 -34.44 -0.30 -13.23 16 8 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 9 C 0.04 0.83 3.76 -91.39 -0.34 0.49 16 10 C 0.10 2.00 8.19 -8.50 -0.07 1.93 16 11 N -0.64 -12.37 3.34 -185.38 -0.62 -12.99 16 12 C 0.51 9.61 6.42 -10.98 -0.07 9.54 16 13 O -0.55 -12.05 17.10 -14.72 -0.25 -12.30 16 14 C 0.13 1.92 1.00 -91.43 -0.09 1.83 16 15 O -0.54 -7.71 12.33 -55.52 -0.68 -8.39 16 16 C -0.11 -1.58 5.33 -25.63 -0.14 -1.71 16 17 C -0.07 -0.83 7.52 38.30 0.29 -0.54 16 18 S -0.26 -3.81 21.78 -107.50 -2.34 -6.15 16 19 C -0.10 -1.45 5.98 37.53 0.22 -1.23 16 20 C 0.09 1.75 6.05 -8.64 -0.05 1.70 16 21 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 22 H 0.07 1.66 8.11 -51.93 -0.42 1.24 16 23 H 0.07 1.46 8.10 -51.93 -0.42 1.04 16 24 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 25 H 0.38 4.53 8.78 45.56 0.40 4.93 16 26 H 0.10 1.49 5.79 -51.92 -0.30 1.19 16 27 H 0.10 1.24 8.05 -51.93 -0.42 0.82 16 28 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.10 1.25 7.89 -51.93 -0.41 0.84 16 31 H 0.11 1.81 7.41 -51.93 -0.38 1.42 16 32 H 0.08 1.66 5.98 -51.93 -0.31 1.35 16 33 H 0.07 1.48 7.94 -51.93 -0.41 1.07 16 LS Contribution 285.84 15.07 4.31 4.31 Total: -1.00 -28.84 285.84 -8.02 -36.86 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -3.49 Total: 6.24 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -0.65 Total: 0.45 kcal Atomic # 7 Polarization: -35.90 SS G_CDS: 0.12 Total: -35.79 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: -0.94 Total: -20.69 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Atomic # 16 Polarization: -3.81 SS G_CDS: -2.34 Total: -6.15 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -28.84 -8.02 -36.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598030607.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.491 kcal (2) G-P(sol) polarization free energy of solvation -28.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds