Wall clock time and date at job start Thu Apr 9 2020 14:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86806 * 120.00275 * 2 1 4 4 H 1.48505 * 109.46986 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47087 * 299.99964 * 3 2 1 6 6 H 1.48495 * 109.46808 * 60.00113 * 3 2 1 7 7 C 1.37879 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00470 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99682 * 0.02562 * 7 2 1 10 10 C 1.53498 * 114.20537 * 179.97438 * 9 7 2 11 11 N 1.47066 * 87.98345 * 139.85203 * 10 9 7 12 12 C 1.34778 * 136.05587 * 152.84348 * 11 10 9 13 13 O 1.21275 * 120.00295 * 4.47480 * 12 11 10 14 14 C 1.50708 * 120.00072 * 184.47602 * 12 11 10 15 15 O 1.42895 * 108.73356 * 181.88010 * 14 12 11 16 16 C 1.52938 * 108.88704 * 300.38975 * 14 12 11 17 17 C 1.55150 * 108.96366 * 150.89141 * 16 14 12 18 18 S 1.83995 * 100.90804 * 318.56314 * 17 16 14 19 19 C 1.53709 * 108.88540 * 63.37134 * 14 12 11 20 20 C 1.47069 * 87.88624 * 333.10323 * 11 10 9 21 21 H 0.97002 * 120.00049 * 359.97438 * 1 2 3 22 22 H 1.08999 * 113.28427 * 46.93588 * 9 7 2 23 23 H 1.09004 * 113.46726 * 25.08001 * 10 9 7 24 24 H 1.09003 * 113.52544 * 254.64194 * 10 9 7 25 25 H 0.96701 * 113.99953 * 297.84819 * 15 14 12 26 26 H 1.09010 * 109.60296 * 30.96219 * 16 14 12 27 27 H 1.08999 * 109.60465 * 270.82528 * 16 14 12 28 28 H 1.08997 * 111.13200 * 200.65027 * 17 16 14 29 29 H 1.09004 * 111.12937 * 76.47134 * 17 16 14 30 30 H 1.08995 * 110.34481 * 117.51154 * 19 14 12 31 31 H 1.08993 * 110.34105 * 355.25107 * 19 14 12 32 32 H 1.09000 * 113.46449 * 141.67950 * 20 11 10 33 33 H 1.08996 * 113.46789 * 272.11347 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0017 10 6 2.1486 -3.7442 -0.0028 11 7 1.2071 -4.3601 0.9443 12 6 0.8308 -5.6150 1.2610 13 8 1.3833 -6.5626 0.7438 14 6 -0.2766 -5.8406 2.2580 15 8 -0.4463 -7.2470 2.4450 16 6 0.1220 -5.2083 3.5923 17 6 -1.1614 -4.7703 4.3461 18 16 -2.1503 -4.0602 2.9665 19 6 -1.5804 -5.2526 1.6949 20 6 0.8521 -3.0040 1.3890 21 1 -0.4850 0.8401 0.0004 22 1 0.4437 -2.5299 -0.7335 23 1 3.1371 -3.5671 0.4212 24 1 2.1884 -4.2511 -0.9670 25 1 -0.7103 -7.7212 1.6446 26 1 0.7541 -4.3389 3.4107 27 1 0.6686 -5.9354 4.1927 28 1 -0.9366 -4.0141 5.0982 29 1 -1.6671 -5.6270 4.7917 30 1 -2.3214 -6.0395 1.5544 31 1 -1.3886 -4.7390 0.7529 32 1 -0.2093 -2.8822 1.6056 33 1 1.4915 -2.6277 2.1874 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598030607.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:43:34 Heat of formation + Delta-G solvation = -65.069746 kcal Electronic energy + Delta-G solvation = -17796.344306 eV Core-core repulsion = 14948.820334 eV Total energy + Delta-G solvation = -2847.523972 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 257.087 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.73941 -39.53680 -37.92635 -34.95396 -34.45254 -31.39422 -30.17138 -27.47259 -26.75482 -26.04935 -23.24972 -21.68897 -20.28715 -18.89128 -18.43355 -18.07460 -17.49579 -16.75112 -16.59561 -16.18784 -15.54352 -15.26889 -14.99029 -14.57371 -14.19728 -13.98465 -13.54304 -13.27168 -13.24119 -13.10938 -12.90025 -12.75134 -12.59860 -12.51696 -12.18057 -12.13438 -11.39590 -11.08436 -11.03122 -10.59048 -10.40757 -9.66441 -8.70014 -8.13934 -6.25164 0.68817 1.10903 1.45537 1.46915 1.50900 1.60650 1.86569 2.47410 2.87585 3.14394 3.18340 3.22592 3.59437 3.81094 4.02550 4.24814 4.27500 4.38775 4.41326 4.50108 4.64675 4.67990 4.69359 4.81415 4.85508 4.96445 5.15620 5.60425 5.82970 6.24547 6.37571 6.76186 6.83144 6.97792 7.44722 8.95530 Molecular weight = 257.09amu Principal moments of inertia in cm(-1) A = 0.026288 B = 0.006865 C = 0.005907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.880549 B = 4077.497887 C = 4739.231966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.024 3.976 3 Si 0.955 3.045 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.280 1.280 7 C -0.529 4.529 8 H 0.066 0.934 9 C 0.024 3.976 10 C 0.103 3.897 11 N -0.634 5.634 12 C 0.507 3.493 13 O -0.584 6.584 14 C 0.137 3.863 15 O -0.535 6.535 16 C -0.117 4.117 17 C -0.049 4.049 18 S -0.301 6.301 19 C -0.091 4.091 20 C 0.107 3.893 21 H 0.264 0.736 22 H 0.038 0.962 23 H 0.085 0.915 24 H 0.058 0.942 25 H 0.395 0.605 26 H 0.089 0.911 27 H 0.110 0.890 28 H 0.132 0.868 29 H 0.115 0.885 30 H 0.127 0.873 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.860 -8.009 7.810 11.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.176 4.176 3 Si 0.780 3.220 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.206 1.206 7 C -0.567 4.567 8 H 0.084 0.916 9 C 0.005 3.995 10 C -0.019 4.019 11 N -0.368 5.368 12 C 0.295 3.705 13 O -0.466 6.466 14 C 0.091 3.909 15 O -0.342 6.342 16 C -0.156 4.156 17 C -0.196 4.196 18 S -0.074 6.074 19 C -0.240 4.240 20 C -0.015 4.015 21 H 0.073 0.927 22 H 0.056 0.944 23 H 0.103 0.897 24 H 0.076 0.924 25 H 0.246 0.754 26 H 0.107 0.893 27 H 0.128 0.872 28 H 0.151 0.849 29 H 0.133 0.867 30 H 0.145 0.855 31 H 0.108 0.892 32 H 0.097 0.903 33 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.418 -7.531 8.158 11.617 hybrid contribution 0.931 -0.158 -0.961 1.347 sum -2.487 -7.689 7.197 10.822 Atomic orbital electron populations 1.70061 1.07281 1.27698 1.49972 1.25710 0.95517 1.02342 0.94072 0.85557 0.79257 0.79669 0.77475 1.18871 1.21058 1.20621 1.21197 0.93263 0.90432 1.51806 0.91613 1.20154 0.94432 0.91636 0.93286 1.23317 0.94681 0.92083 0.91866 1.50029 1.41638 1.05099 1.40002 1.21354 0.85137 0.80980 0.82982 1.90642 1.58226 1.41522 1.56235 1.21630 0.90549 0.84179 0.94566 1.86545 1.91272 1.16644 1.39789 1.22383 0.99211 1.01695 0.92281 1.24452 0.94118 1.04260 0.96788 1.88267 1.64297 1.45534 1.09342 1.24698 0.98010 1.01052 1.00237 1.23528 1.01441 0.76091 1.00485 0.92710 0.94367 0.89735 0.92380 0.75365 0.89291 0.87197 0.84946 0.86684 0.85479 0.89151 0.90273 0.90306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.30 13.26 21.45 0.28 -49.01 16 2 C 0.02 1.25 5.46 84.66 0.46 1.71 16 3 Si 0.95 40.36 29.54 68.60 2.03 42.39 16 4 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 5 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 6 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 7 C -0.53 -26.32 8.84 25.60 0.23 -26.10 16 8 H 0.07 3.18 7.81 -2.91 -0.02 3.16 16 9 C 0.02 1.12 3.76 -11.29 -0.04 1.07 16 10 C 0.10 4.16 8.19 83.18 0.68 4.84 16 11 N -0.63 -24.42 3.34 -858.80 -2.87 -27.29 16 12 C 0.51 18.66 6.42 87.66 0.56 19.22 16 13 O -0.58 -24.92 17.10 16.38 0.28 -24.63 16 14 C 0.14 3.92 1.00 -11.32 -0.01 3.91 16 15 O -0.54 -14.08 12.33 -129.58 -1.60 -15.67 16 16 C -0.12 -2.93 5.33 31.31 0.17 -2.76 16 17 C -0.05 -1.02 7.52 72.72 0.55 -0.47 16 18 S -0.30 -8.54 21.78 -56.49 -1.23 -9.77 16 19 C -0.09 -2.52 5.98 72.22 0.43 -2.09 16 20 C 0.11 4.30 6.05 83.09 0.50 4.80 16 21 H 0.26 13.62 8.31 -92.71 -0.77 12.85 16 22 H 0.04 1.97 8.11 -2.39 -0.02 1.95 16 23 H 0.08 3.25 8.10 -2.39 -0.02 3.23 16 24 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 25 H 0.40 8.46 8.78 -74.06 -0.65 7.81 16 26 H 0.09 2.46 5.79 -2.38 -0.01 2.45 16 27 H 0.11 2.49 8.05 -2.39 -0.02 2.47 16 28 H 0.13 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.11 1.99 8.14 -2.38 -0.02 1.97 16 30 H 0.13 2.85 7.89 -2.39 -0.02 2.83 16 31 H 0.09 2.91 7.41 -2.39 -0.02 2.90 16 32 H 0.08 3.24 5.98 -2.39 -0.01 3.23 16 33 H 0.08 3.10 7.94 -2.39 -0.02 3.08 16 Total: -1.00 -60.67 285.84 0.90 -59.77 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: 0.48 Total: 20.09 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: 3.53 Total: 4.13 kcal Atomic # 7 Polarization: -73.71 SS G_CDS: -2.59 Total: -76.30 kcal Atomic # 8 Polarization: -38.99 SS G_CDS: -1.32 Total: -40.31 kcal Atomic # 14 Polarization: 40.36 SS G_CDS: 2.03 Total: 42.39 kcal Atomic # 16 Polarization: -8.54 SS G_CDS: -1.23 Total: -9.77 kcal Total: -60.67 0.90 -59.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598030607.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.298 kcal (2) G-P(sol) polarization free energy of solvation -60.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds