Wall clock time and date at job start Thu Apr 9 2020 14:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.39724 * 120.43593 * 17.08769 * 3 2 1 5 5 C 1.39651 * 118.31874 * 179.97438 * 4 3 2 6 6 C 1.43204 * 120.44708 * 179.97438 * 5 4 3 7 7 N 5.93198 * 145.99465 * 17.08131 * 2 1 3 8 8 C 1.40960 * 119.10586 * 359.97438 * 5 4 3 9 9 S 1.76204 * 119.60332 * 179.97438 * 8 5 4 10 10 C 1.80999 * 99.99629 * 179.97438 * 9 8 5 11 11 C 1.50697 * 109.47003 * 179.97438 * 10 9 8 12 12 H 1.08000 * 120.00165 * 359.97438 * 11 10 9 13 13 C 1.37878 * 120.00415 * 180.02562 * 11 10 9 14 14 N 1.31518 * 119.99655 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00443 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47081 * 59.99537 * 15 13 11 17 17 H 1.48498 * 109.47352 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.46776 * 299.99715 * 15 13 11 19 19 N 1.32439 * 120.78581 * 359.74819 * 8 5 4 20 20 C 1.32330 * 121.84605 * 0.52402 * 19 8 5 21 21 N 1.38025 * 119.59305 * 179.75270 * 20 19 8 22 22 H 1.08007 * 120.84083 * 359.97438 * 4 3 2 23 23 H 1.08996 * 109.47373 * 299.99911 * 10 9 8 24 24 H 1.08996 * 109.47221 * 60.00199 * 10 9 8 25 25 H 0.96999 * 120.00314 * 179.97438 * 14 13 11 26 26 H 0.96996 * 120.00314 * 179.72714 * 21 20 19 27 27 H 0.97009 * 120.00077 * 359.45141 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2764 -1.1506 -0.3540 5 6 4.6719 -1.1005 -0.3393 6 6 5.4432 -2.2539 -0.6935 7 7 6.0535 -3.1712 -0.9745 8 6 5.3111 0.1008 0.0287 9 16 7.0713 0.1784 0.0523 10 6 7.3030 1.8950 0.5775 11 6 8.7765 2.1972 0.6705 12 1 9.5007 1.4309 0.4368 13 6 9.2000 3.4517 1.0550 14 7 8.3181 4.3848 1.3400 15 14 11.0264 3.8266 1.1696 16 1 11.6571 3.6267 -0.1599 17 1 11.2166 5.2348 1.6005 18 1 11.6574 2.9162 2.1586 19 7 4.6044 1.1730 0.3527 20 6 3.2811 1.1624 0.3555 21 7 2.5911 2.3053 0.7059 22 1 2.7577 -2.0563 -0.6319 23 1 6.8399 2.5628 -0.1488 24 1 6.8401 2.0421 1.5532 25 1 8.6160 5.2673 1.6109 26 1 1.6211 2.3053 0.7061 27 1 3.0762 3.1073 0.9558 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039335014.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:45:16 Heat of formation + Delta-G solvation = 84.967723 kcal Electronic energy + Delta-G solvation = -15382.011053 eV Core-core repulsion = 12652.024381 eV Total energy + Delta-G solvation = -2729.986672 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 260.043 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.41671 -36.88265 -36.39323 -34.82428 -33.31600 -32.76400 -30.10432 -28.70623 -25.18832 -23.90609 -22.97397 -20.47433 -18.45484 -18.04293 -17.13521 -16.39643 -15.50477 -15.35074 -15.07962 -14.62584 -13.78360 -13.62631 -13.46956 -13.13604 -13.06297 -12.96310 -12.67573 -12.47040 -12.44846 -12.20099 -11.12189 -10.95447 -10.89351 -10.63119 -10.09188 -9.78098 -9.62228 -9.38961 -8.72845 -8.33776 -7.17408 -6.30325 -4.37554 0.51775 0.88581 1.89535 2.47557 2.70241 2.77763 3.09225 3.21406 3.25497 3.28363 3.29077 3.43676 3.76778 3.90341 4.13170 4.25943 4.45839 4.81443 5.07268 5.11993 5.48464 5.64042 5.94517 6.84307 6.99056 7.09196 7.10144 7.35080 7.59145 7.67691 7.83048 7.92867 8.63310 9.26992 10.79894 Molecular weight = 260.04amu Principal moments of inertia in cm(-1) A = 0.023680 B = 0.005523 C = 0.004489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.138862 B = 5068.318059 C = 6235.312753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C 0.271 3.729 3 C -0.190 4.190 4 C 0.082 3.918 5 C -0.145 4.145 6 C 0.272 3.728 7 N -0.419 5.419 8 C 0.246 3.754 9 S -0.049 6.049 10 C 0.070 3.930 11 C -0.531 4.531 12 H 0.066 0.934 13 C 0.073 3.927 14 N -0.884 5.884 15 Si 0.905 3.095 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.273 1.273 19 N -0.534 5.534 20 C 0.495 3.505 21 N -0.826 5.826 22 H 0.152 0.848 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.268 0.732 26 H 0.410 0.590 27 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.182 -4.525 -1.360 11.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.110 5.110 2 C -0.043 4.043 3 C -0.206 4.206 4 C 0.051 3.949 5 C -0.161 4.161 6 C -0.044 4.044 7 N -0.095 5.095 8 C -0.010 4.010 9 S 0.199 5.801 10 C -0.077 4.077 11 C -0.570 4.570 12 H 0.084 0.916 13 C -0.133 4.133 14 N -0.520 5.520 15 Si 0.732 3.268 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.198 1.198 19 N -0.257 5.257 20 C 0.245 3.755 21 N -0.366 5.366 22 H 0.169 0.831 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.240 0.760 27 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -9.559 -5.763 -1.751 11.298 hybrid contribution -0.451 1.307 0.409 1.441 sum -10.010 -4.456 -1.343 11.039 Atomic orbital electron populations 1.81286 1.11640 1.07004 1.11092 1.25213 0.91981 0.94185 0.92955 1.15840 0.85114 0.96371 1.23257 1.21161 0.91077 0.96136 0.86537 1.15981 0.91365 0.90436 1.18285 1.24981 0.93573 0.92460 0.93343 1.81246 1.07342 1.10803 1.10096 1.23820 1.01247 0.88169 0.87729 1.86195 0.90264 1.25602 1.78019 1.21408 1.01039 0.84276 1.00986 1.20634 0.89608 0.97901 1.48900 0.91561 1.24904 0.98520 0.95489 0.94346 1.69938 1.33948 1.03911 1.44241 0.86430 0.83980 0.77485 0.78913 1.19828 1.20951 1.19825 1.67976 1.04295 1.27765 1.25643 1.18287 0.88082 0.85111 0.84019 1.42302 1.09402 1.12352 1.72518 0.83076 0.92478 0.92496 0.92281 0.76001 0.75086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -5.43 18.54 41.84 0.78 -4.65 15 2 C 0.27 2.96 14.08 -22.47 -0.32 2.65 15 3 C -0.19 -2.06 5.77 -106.42 -0.61 -2.67 15 4 C 0.08 0.84 9.61 -38.50 -0.37 0.47 15 5 C -0.14 -1.93 5.77 -106.41 -0.61 -2.54 15 6 C 0.27 3.99 14.28 -22.44 -0.32 3.67 15 7 N -0.42 -6.85 18.54 41.88 0.78 -6.07 15 8 C 0.25 3.96 7.02 -16.26 -0.11 3.85 15 9 S -0.05 -0.95 20.95 -107.50 -2.25 -3.21 15 10 C 0.07 1.63 4.58 36.00 0.16 1.79 15 11 C -0.53 -13.72 9.13 -34.44 -0.31 -14.04 15 12 H 0.07 1.69 7.71 -52.49 -0.40 1.29 15 13 C 0.07 1.90 5.46 -17.82 -0.10 1.81 15 14 N -0.88 -23.89 13.29 55.43 0.74 -23.16 15 15 Si 0.91 20.11 29.54 -169.99 -5.02 15.09 15 16 H -0.27 -6.01 7.11 56.52 0.40 -5.60 15 17 H -0.28 -6.23 7.11 56.52 0.40 -5.82 15 18 H -0.27 -6.00 7.11 56.52 0.40 -5.60 15 19 N -0.53 -8.38 9.11 -10.62 -0.10 -8.48 15 20 C 0.49 6.13 7.75 -155.36 -1.20 4.93 15 21 N -0.83 -8.06 8.96 31.27 0.28 -7.78 15 22 H 0.15 1.09 8.06 -52.48 -0.42 0.67 15 23 H 0.06 1.40 8.12 -51.92 -0.42 0.98 15 24 H 0.06 1.40 8.12 -51.92 -0.42 0.98 15 25 H 0.27 6.85 8.31 -40.82 -0.34 6.51 15 26 H 0.41 3.21 7.63 -40.82 -0.31 2.90 15 27 H 0.42 3.99 8.95 -40.82 -0.37 3.62 15 LS Contribution 280.57 15.07 4.23 4.23 Total: -1.00 -28.35 280.57 -5.85 -34.21 By element: Atomic # 1 Polarization: 1.40 SS G_CDS: -1.48 Total: -0.09 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: -3.80 Total: -0.09 kcal Atomic # 7 Polarization: -52.61 SS G_CDS: 2.47 Total: -50.14 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Atomic # 16 Polarization: -0.95 SS G_CDS: -2.25 Total: -3.21 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -28.35 -5.85 -34.21 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039335014.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.173 kcal (2) G-P(sol) polarization free energy of solvation -28.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds