Wall clock time and date at job start Thu Apr 9 2020 14:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47277 * 104.14534 * 3 2 1 5 5 C 1.37097 * 120.00182 * 264.23327 * 4 3 2 6 6 H 1.07998 * 120.00262 * 197.72257 * 5 4 3 7 7 C 1.38955 * 119.99904 * 17.71886 * 5 4 3 8 8 N 1.31416 * 120.00041 * 21.41685 * 7 5 4 9 9 Si 1.86795 * 120.00012 * 201.42183 * 7 5 4 10 10 H 1.48501 * 109.47163 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47467 * 119.99679 * 9 7 5 12 12 H 1.48502 * 109.47017 * 239.99946 * 9 7 5 13 13 C 1.34776 * 119.99936 * 84.22850 * 4 3 2 14 14 O 1.21294 * 119.99890 * 180.02562 * 13 4 3 15 15 C 1.50706 * 119.99836 * 0.02562 * 13 4 3 16 16 C 1.50701 * 109.46743 * 179.97438 * 15 13 4 17 17 C 1.38282 * 119.97339 * 270.02023 * 16 15 13 18 18 C 1.38247 * 120.11313 * 180.02562 * 17 16 15 19 19 C 1.38168 * 120.05502 * 359.67666 * 18 17 16 20 20 C 1.38709 * 119.94119 * 0.57376 * 19 18 17 21 21 O 1.35899 * 120.05698 * 179.71977 * 20 19 18 22 22 C 1.38129 * 119.97239 * 89.99716 * 16 15 13 23 23 H 1.08997 * 109.46754 * 344.14291 * 3 2 1 24 24 H 1.08999 * 109.46519 * 224.14920 * 3 2 1 25 25 H 0.97000 * 120.00110 * 180.02562 * 8 7 5 26 26 H 1.08992 * 109.47321 * 59.99536 * 15 13 4 27 27 H 1.09000 * 109.46978 * 299.99280 * 15 13 4 28 28 H 1.07999 * 119.94636 * 359.97438 * 17 16 15 29 29 H 1.07998 * 119.97294 * 179.97438 * 18 17 16 30 30 H 1.07994 * 120.03048 * 180.30106 * 19 18 17 31 31 H 0.96696 * 114.00452 * 269.73049 * 21 20 19 32 32 H 1.08004 * 120.02432 * 0.02562 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0962 0.3384 -1.3393 5 6 3.4377 -0.6587 -2.2161 6 1 4.0539 -0.4354 -3.0745 7 6 2.9909 -1.9566 -2.0005 8 7 1.9374 -2.1719 -1.2449 9 14 3.8878 -3.3955 -2.7843 10 1 5.0330 -2.8893 -3.5827 11 1 4.3878 -4.3051 -1.7223 12 1 2.9552 -4.1359 -3.6717 13 6 3.2096 1.6294 -1.7095 14 8 3.6134 1.9090 -2.8186 15 6 2.8347 2.7254 -0.7455 16 6 3.0525 4.0656 -1.3993 17 6 4.2761 4.6995 -1.2849 18 6 4.4789 5.9292 -1.8831 19 6 3.4609 6.5249 -2.6027 20 6 2.2309 5.8935 -2.7147 21 8 1.2262 6.4800 -3.4171 22 6 2.0298 4.6596 -2.1129 23 1 2.9717 -0.9877 0.2808 24 1 2.9709 0.7382 0.7158 25 1 1.6257 -3.0780 -1.0941 26 1 3.4555 2.6520 0.1474 27 1 1.7857 2.6222 -0.4682 28 1 5.0745 4.2335 -0.7265 29 1 5.4353 6.4225 -1.7919 30 1 3.6213 7.4833 -3.0739 31 1 0.6572 7.0534 -2.8856 32 1 1.0742 4.1641 -2.2020 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042417954.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:45:20 Heat of formation + Delta-G solvation = -36.670822 kcal Electronic energy + Delta-G solvation = -18669.449292 eV Core-core repulsion = 15594.975449 eV Total energy + Delta-G solvation = -3074.473843 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 260.095 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.05767 -40.15197 -37.87051 -37.38707 -36.15098 -33.95311 -33.24709 -30.80287 -29.34682 -28.66603 -26.30302 -23.49645 -22.87803 -20.87135 -19.76140 -18.86528 -18.21179 -17.90720 -17.27836 -16.76631 -16.49759 -16.15978 -15.78813 -15.38968 -14.73492 -14.67357 -14.53649 -14.05036 -13.87504 -13.43248 -13.29300 -13.13752 -12.96934 -12.91313 -12.57213 -12.36809 -12.33319 -12.09330 -12.03300 -11.38309 -11.12101 -10.49114 -9.91575 -9.73088 -9.45947 -8.40321 -5.95722 0.36380 0.43188 1.38001 1.48267 1.60507 1.82489 2.07170 2.26114 2.36243 2.71524 3.00155 3.21092 3.33965 3.61044 3.79479 3.98437 4.14665 4.24353 4.39011 4.44790 4.59938 4.66265 4.74986 4.92561 5.04736 5.09513 5.49150 5.49328 5.50886 5.68681 5.97019 6.06985 6.41377 6.88210 7.01081 7.13731 7.36548 7.94414 8.63524 Molecular weight = 260.09amu Principal moments of inertia in cm(-1) A = 0.026874 B = 0.005443 C = 0.005051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.638767 B = 5142.643507 C = 5542.616742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C 0.257 3.743 3 C 0.220 3.780 4 N -0.457 5.457 5 C -0.339 4.339 6 H 0.080 0.920 7 C 0.005 3.995 8 N -0.894 5.894 9 Si 0.985 3.015 10 H -0.272 1.272 11 H -0.261 1.261 12 H -0.291 1.291 13 C 0.453 3.547 14 O -0.612 6.612 15 C -0.093 4.093 16 C -0.052 4.052 17 C -0.123 4.123 18 C -0.100 4.100 19 C -0.155 4.155 20 C 0.092 3.908 21 O -0.513 6.513 22 C -0.160 4.160 23 H 0.125 0.875 24 H 0.144 0.856 25 H 0.274 0.726 26 H 0.138 0.862 27 H 0.091 0.909 28 H 0.143 0.857 29 H 0.159 0.841 30 H 0.148 0.852 31 H 0.408 0.592 32 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.377 12.536 6.904 15.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.191 5.191 2 C -0.060 4.060 3 C 0.094 3.906 4 N -0.177 5.177 5 C -0.466 4.466 6 H 0.097 0.903 7 C -0.197 4.197 8 N -0.533 5.533 9 Si 0.810 3.190 10 H -0.197 1.197 11 H -0.185 1.185 12 H -0.218 1.218 13 C 0.244 3.756 14 O -0.497 6.497 15 C -0.132 4.132 16 C -0.052 4.052 17 C -0.141 4.141 18 C -0.118 4.118 19 C -0.173 4.173 20 C 0.048 3.952 21 O -0.326 6.326 22 C -0.179 4.179 23 H 0.142 0.858 24 H 0.162 0.838 25 H 0.084 0.916 26 H 0.156 0.844 27 H 0.110 0.890 28 H 0.161 0.839 29 H 0.176 0.824 30 H 0.166 0.834 31 H 0.266 0.734 32 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 4.034 12.190 5.955 14.154 hybrid contribution -0.121 -0.999 -0.472 1.111 sum 3.913 11.192 5.484 13.063 Atomic orbital electron populations 1.80901 1.14871 1.13136 1.10203 1.29847 0.95905 0.89347 0.90914 1.19142 0.79959 1.05951 0.85592 1.43831 1.56876 1.04615 1.12385 1.19622 1.30720 0.87499 1.08799 0.90258 1.25864 0.95196 1.00634 0.97985 1.69945 1.20379 1.22902 1.40032 0.85001 0.78072 0.77721 0.78249 1.19689 1.18508 1.21752 1.20899 0.82388 0.83824 0.88512 1.90547 1.51485 1.83092 1.24541 1.20711 1.04146 0.89515 0.98851 1.19391 0.94302 0.94346 0.97170 1.21325 0.96050 0.95760 1.00982 1.21355 0.99653 0.94922 0.95881 1.21625 0.92983 1.01847 1.00878 1.18558 0.89626 0.92614 0.94377 1.84782 1.43432 1.65970 1.38368 1.21358 1.00178 0.96836 0.99478 0.85752 0.83838 0.91586 0.84399 0.89026 0.83899 0.82368 0.83404 0.73383 0.87485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -23.74 18.54 20.01 0.37 -23.37 16 2 C 0.26 10.88 12.95 89.45 1.16 12.04 16 3 C 0.22 8.03 4.91 84.58 0.42 8.45 16 4 N -0.46 -20.77 2.60 -645.40 -1.68 -22.45 16 5 C -0.34 -17.61 9.32 84.04 0.78 -16.83 16 6 H 0.08 4.51 7.39 -2.91 -0.02 4.49 16 7 C 0.01 0.25 4.87 84.93 0.41 0.67 16 8 N -0.89 -44.46 9.48 21.67 0.21 -44.25 16 9 Si 0.98 40.11 29.60 68.60 2.03 42.14 16 10 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 11 H -0.26 -9.81 7.11 99.48 0.71 -9.11 16 12 H -0.29 -12.19 7.11 99.48 0.71 -11.48 16 13 C 0.45 20.18 7.56 87.66 0.66 20.84 16 14 O -0.61 -33.01 15.68 -3.07 -0.05 -33.06 16 15 C -0.09 -2.97 4.43 29.10 0.13 -2.84 16 16 C -0.05 -1.66 4.37 -19.88 -0.09 -1.75 16 17 C -0.12 -3.34 9.70 22.28 0.22 -3.12 16 18 C -0.10 -2.33 10.04 22.26 0.22 -2.11 16 19 C -0.16 -3.83 9.99 22.37 0.22 -3.61 16 20 C 0.09 2.73 6.70 22.51 0.15 2.88 16 21 O -0.51 -13.50 13.50 -92.41 -1.25 -14.75 16 22 C -0.16 -5.40 9.64 22.37 0.22 -5.18 16 23 H 0.12 4.69 6.46 -2.39 -0.02 4.68 16 24 H 0.14 3.48 6.68 -2.39 -0.02 3.46 16 25 H 0.27 13.13 8.31 -92.71 -0.77 12.36 16 26 H 0.14 3.12 7.36 -2.39 -0.02 3.10 16 27 H 0.09 2.89 7.45 -2.39 -0.02 2.87 16 28 H 0.14 3.20 8.06 -2.91 -0.02 3.17 16 29 H 0.16 2.51 8.06 -2.91 -0.02 2.48 16 30 H 0.15 2.83 8.06 -2.91 -0.02 2.80 16 31 H 0.41 6.02 9.06 -74.06 -0.67 5.35 16 32 H 0.11 3.81 8.06 -2.91 -0.02 3.79 16 Total: -1.00 -73.49 290.16 4.63 -68.85 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: 0.50 Total: 17.44 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: 4.50 Total: 9.44 kcal Atomic # 7 Polarization: -88.97 SS G_CDS: -1.10 Total: -90.07 kcal Atomic # 8 Polarization: -46.51 SS G_CDS: -1.30 Total: -47.80 kcal Atomic # 14 Polarization: 40.11 SS G_CDS: 2.03 Total: 42.14 kcal Total: -73.49 4.63 -68.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042417954.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.183 kcal (2) G-P(sol) polarization free energy of solvation -73.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds