Wall clock time and date at job start Thu Apr 9 2020 14:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86802 * 120.00382 * 2 1 4 4 H 1.48501 * 109.47282 * 270.00090 * 3 2 1 5 5 H 1.48502 * 109.46653 * 29.99998 * 3 2 1 6 6 H 1.48501 * 109.47443 * 149.99949 * 3 2 1 7 7 C 1.37880 * 120.00033 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00046 * 179.97438 * 7 2 1 9 9 S 1.76198 * 120.00031 * 0.02562 * 7 2 1 10 10 O 1.42097 * 106.40280 * 66.46098 * 9 7 2 11 11 O 1.42103 * 106.40314 * 293.54109 * 9 7 2 12 12 N 1.65596 * 107.22092 * 180.02562 * 9 7 2 13 13 C 1.46501 * 120.00241 * 64.99599 * 12 9 7 14 14 H 1.09005 * 110.32584 * 22.91862 * 13 12 9 15 15 C 1.54567 * 110.28914 * 260.83396 * 13 12 9 16 16 C 1.54966 * 102.95057 * 219.44737 * 15 13 12 17 17 N 1.48354 * 103.13878 * 37.60460 * 16 15 13 18 18 C 1.46976 * 110.59780 * 203.70617 * 17 16 15 19 19 C 1.53666 * 107.86574 * 96.70809 * 18 17 16 20 20 C 1.53979 * 105.67516 * 0.21911 * 19 18 17 21 21 C 1.48461 * 105.72479 * 320.15557 * 17 16 15 22 22 H 1.08999 * 112.47378 * 149.02325 * 21 17 16 23 23 H 0.97003 * 119.99795 * 0.02562 * 1 2 3 24 24 H 0.97002 * 120.00050 * 245.00347 * 12 9 7 25 25 H 1.08999 * 110.71712 * 337.81088 * 15 13 12 26 26 H 1.09001 * 110.71821 * 101.08055 * 15 13 12 27 27 H 1.08995 * 110.68450 * 155.97763 * 16 15 13 28 28 H 1.08999 * 110.68738 * 279.16394 * 16 15 13 29 29 H 1.09002 * 109.79270 * 337.10052 * 18 17 16 30 30 H 1.09000 * 109.79093 * 216.31459 * 18 17 16 31 31 H 1.09001 * 110.20411 * 119.26364 * 19 18 17 32 32 H 1.08990 * 110.20920 * 241.16313 * 19 18 17 33 33 H 1.08998 * 110.39750 * 135.90599 * 20 19 18 34 34 H 1.08999 * 110.39249 * 258.18009 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 16 1.1235 -2.7200 -0.0019 10 8 0.4519 -2.7945 -1.2519 11 8 0.4508 -2.7961 1.2475 12 7 2.2482 -3.9354 -0.0016 13 6 3.1384 -4.1094 1.1488 14 1 2.6956 -3.6661 2.0408 15 6 4.5167 -3.4717 0.8612 16 6 5.5064 -4.4860 1.4884 17 7 4.8834 -5.7975 1.1836 18 6 5.3362 -6.8193 2.1381 19 6 4.2726 -6.9388 3.2407 20 6 3.1713 -5.9294 2.8676 21 6 3.4246 -5.6057 1.3816 22 1 2.8282 -6.2375 0.7234 23 1 -0.4850 0.8401 -0.0004 24 1 2.3176 -4.5322 -0.7632 25 1 4.6841 -3.3830 -0.2122 26 1 4.6009 -2.4997 1.3474 27 1 6.4869 -4.4078 1.0189 28 1 5.5808 -4.3357 2.5654 29 1 6.2888 -6.5198 2.5751 30 1 5.4487 -7.7762 1.6285 31 1 3.8651 -7.9495 3.2627 32 1 4.7039 -6.6848 4.2089 33 1 2.1860 -6.3774 2.9961 34 1 3.2602 -5.0286 3.4748 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044510016.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:45:27 Heat of formation + Delta-G solvation = -90.597152 kcal Electronic energy + Delta-G solvation = -18489.979686 eV Core-core repulsion = 15548.611374 eV Total energy + Delta-G solvation = -2941.368313 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 260.098 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.09060 -35.26018 -34.80558 -33.92226 -33.09109 -32.27772 -29.61487 -28.02822 -26.09657 -24.74604 -21.12872 -20.72139 -20.04110 -18.85920 -17.49392 -16.41963 -16.22318 -15.52401 -14.82206 -14.71945 -14.18774 -13.94029 -13.60626 -13.43118 -13.27852 -12.39367 -12.01461 -11.94874 -11.71441 -11.37017 -11.34225 -11.21118 -11.13695 -10.98959 -10.62126 -10.56560 -10.42369 -10.26706 -10.14925 -10.09638 -9.23332 -8.96440 -8.49163 -8.46505 -6.68404 -5.29689 2.37554 3.07312 3.14300 3.19990 4.06841 4.08333 4.52335 4.63821 4.66388 4.79631 4.98565 5.11075 5.17126 5.30708 5.46811 5.48542 5.64448 5.67191 5.81842 5.86897 5.90452 5.99186 6.03141 6.04153 6.24490 6.28674 6.45614 6.62717 6.84382 7.01349 7.05460 7.34311 7.94317 8.01795 8.91072 10.25842 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.030689 B = 0.006757 C = 0.006084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.145426 B = 4142.587117 C = 4600.880249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.133 3.867 3 Si 0.919 3.081 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.263 1.263 7 C -1.019 5.019 8 H 0.104 0.896 9 S 2.713 3.287 10 O -1.008 7.008 11 O -1.009 7.009 12 N -1.128 6.128 13 C 0.156 3.844 14 H 0.100 0.900 15 C -0.143 4.143 16 C 0.031 3.969 17 N -0.502 5.502 18 C 0.034 3.966 19 C -0.147 4.147 20 C -0.149 4.149 21 C 0.054 3.946 22 H 0.104 0.896 23 H 0.290 0.710 24 H 0.404 0.596 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.046 0.954 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.689 -9.228 5.017 14.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.085 4.085 3 Si 0.743 3.257 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.187 1.187 7 C -1.152 5.152 8 H 0.122 0.878 9 S 2.813 3.187 10 O -0.998 6.998 11 O -0.998 6.998 12 N -0.880 5.880 13 C 0.046 3.954 14 H 0.118 0.882 15 C -0.183 4.183 16 C -0.098 4.098 17 N -0.225 5.225 18 C -0.095 4.095 19 C -0.186 4.186 20 C -0.188 4.188 21 C -0.056 4.056 22 H 0.122 0.878 23 H 0.101 0.899 24 H 0.235 0.765 25 H 0.103 0.897 26 H 0.099 0.901 27 H 0.099 0.901 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.690 -9.346 4.612 14.231 hybrid contribution 0.859 1.208 0.551 1.582 sum 10.549 -8.137 5.162 14.288 Atomic orbital electron populations 1.69899 1.06794 1.30655 1.40231 1.24739 0.94422 1.00775 0.88545 0.86189 0.80145 0.80203 0.79155 1.19232 1.20061 1.18689 1.30591 1.06143 1.11776 1.66695 0.87808 1.00430 0.72111 0.73325 0.72807 1.93373 1.73187 1.87668 1.45585 1.93355 1.72892 1.87575 1.46024 1.56044 1.55002 1.50978 1.26008 1.21588 0.90373 0.93695 0.89719 0.88232 1.23150 0.94065 0.98413 1.02698 1.23306 0.98633 0.89130 0.98701 1.65904 1.04163 1.05861 1.46571 1.22776 0.97734 0.96954 0.91993 1.22587 0.96701 1.00017 0.99291 1.22901 0.99561 0.99639 0.96735 1.23564 0.89570 0.96860 0.95581 0.87831 0.89944 0.76521 0.89683 0.90071 0.90129 0.93516 0.91713 0.90583 0.91313 0.91587 0.90461 0.90873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.84 13.19 55.43 0.73 -24.11 16 2 C 0.13 3.68 5.46 -17.82 -0.10 3.58 16 3 Si 0.92 20.42 29.54 -169.99 -5.02 15.40 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 6 H -0.26 -5.59 7.11 56.52 0.40 -5.18 16 7 C -1.02 -27.51 9.72 30.60 0.30 -27.21 16 8 H 0.10 2.54 7.48 -52.49 -0.39 2.15 16 9 S 2.71 71.25 5.00 -107.50 -0.54 70.71 16 10 O -1.01 -29.60 18.02 -57.17 -1.03 -30.63 16 11 O -1.01 -29.11 17.39 -57.17 -0.99 -30.10 16 12 N -1.13 -22.21 5.44 -3.70 -0.02 -22.23 16 13 C 0.16 2.67 3.20 -66.53 -0.21 2.46 16 14 H 0.10 1.84 6.68 -51.93 -0.35 1.49 16 15 C -0.14 -2.20 6.45 -24.87 -0.16 -2.36 16 16 C 0.03 0.39 6.12 -1.98 -0.01 0.38 16 17 N -0.50 -6.60 5.79 -220.97 -1.28 -7.88 16 18 C 0.03 0.37 6.64 -3.44 -0.02 0.34 16 19 C -0.15 -1.51 6.91 -25.87 -0.18 -1.68 16 20 C -0.15 -1.89 6.16 -25.60 -0.16 -2.05 16 21 C 0.05 0.78 3.89 -65.65 -0.26 0.52 16 22 H 0.10 1.49 7.93 -51.93 -0.41 1.08 16 23 H 0.29 7.67 8.31 -40.82 -0.34 7.33 16 24 H 0.40 7.03 8.79 -34.47 -0.30 6.73 16 25 H 0.08 1.33 8.05 -51.93 -0.42 0.92 16 26 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 27 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.05 0.55 7.94 -51.93 -0.41 0.14 16 29 H 0.06 0.62 7.68 -51.93 -0.40 0.22 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.07 0.95 7.39 -51.93 -0.38 0.57 16 LS Contribution 289.34 15.07 4.36 4.36 Total: -1.00 -34.04 289.34 -9.33 -43.37 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -4.74 Total: 7.14 kcal Atomic # 6 Polarization: -25.22 SS G_CDS: -0.80 Total: -26.02 kcal Atomic # 7 Polarization: -53.66 SS G_CDS: -0.57 Total: -54.22 kcal Atomic # 8 Polarization: -58.71 SS G_CDS: -2.02 Total: -60.73 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 16 Polarization: 71.25 SS G_CDS: -0.54 Total: 70.71 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -34.04 -9.33 -43.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044510016.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.230 kcal (2) G-P(sol) polarization free energy of solvation -34.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds