Wall clock time and date at job start Thu Apr 9 2020 14:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99946 * 2 1 4 4 H 1.48503 * 109.46960 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46980 * 300.00156 * 3 2 1 6 6 H 1.48503 * 109.46718 * 59.99943 * 3 2 1 7 7 C 1.37881 * 119.99864 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99753 * 180.02562 * 7 2 1 9 9 S 1.76196 * 120.00061 * 0.02562 * 7 2 1 10 10 O 1.42097 * 106.40607 * 66.45923 * 9 7 2 11 11 O 1.42105 * 106.40287 * 293.53681 * 9 7 2 12 12 N 1.65598 * 107.21599 * 180.02562 * 9 7 2 13 13 C 1.46498 * 120.00298 * 64.99801 * 12 9 7 14 14 H 1.08996 * 110.65203 * 357.81444 * 13 12 9 15 15 C 1.55159 * 110.88513 * 121.09008 * 13 12 9 16 16 C 1.54832 * 101.66186 * 82.27088 * 15 13 12 17 17 N 1.49488 * 105.11614 * 37.06049 * 16 15 13 18 18 C 1.47953 * 109.59322 * 219.01659 * 17 16 15 19 19 C 1.55315 * 105.10843 * 139.91000 * 18 17 16 20 20 C 1.55164 * 101.44190 * 323.35759 * 19 18 17 21 21 C 1.47861 * 107.55349 * 336.63112 * 17 16 15 22 22 H 1.09007 * 110.77289 * 121.28103 * 21 17 16 23 23 H 0.96993 * 120.00173 * 359.97438 * 1 2 3 24 24 H 0.97004 * 120.00019 * 244.99710 * 12 9 7 25 25 H 1.09001 * 110.99203 * 200.36292 * 15 13 12 26 26 H 1.08999 * 110.99265 * 324.13405 * 15 13 12 27 27 H 1.09005 * 110.33006 * 155.57199 * 16 15 13 28 28 H 1.09005 * 110.32335 * 277.77274 * 16 15 13 29 29 H 1.08995 * 110.32325 * 258.80856 * 18 17 16 30 30 H 1.09002 * 110.31751 * 20.90926 * 18 17 16 31 31 H 1.09008 * 111.17945 * 205.30273 * 19 18 17 32 32 H 1.09001 * 111.00871 * 81.34332 * 19 18 17 33 33 H 1.08996 * 110.73347 * 277.71084 * 20 19 18 34 34 H 1.09002 * 110.72716 * 154.58628 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 16 1.1236 -2.7200 -0.0019 10 8 0.4519 -2.7945 -1.2519 11 8 0.4510 -2.7962 1.2476 12 7 2.2483 -3.9354 -0.0016 13 6 3.1386 -4.1093 1.1488 14 1 2.9563 -3.3371 1.8962 15 6 2.9730 -5.5225 1.7676 16 6 3.8728 -6.3770 0.8416 17 7 5.0421 -5.5032 0.5196 18 6 5.4275 -5.6918 -0.8963 19 6 5.7775 -4.2697 -1.4135 20 6 4.7282 -3.4039 -0.6672 21 6 4.6141 -4.0998 0.7032 22 1 5.2379 -3.5991 1.4438 23 1 -0.4850 0.8400 0.0004 24 1 2.3178 -4.5322 -0.7631 25 1 3.3376 -5.5442 2.7946 26 1 1.9352 -5.8518 1.7170 27 1 4.2100 -7.2730 1.3628 28 1 3.3335 -6.6468 -0.0664 29 1 6.2970 -6.3450 -0.9682 30 1 4.5945 -6.1077 -1.4631 31 1 5.6448 -4.1996 -2.4932 32 1 6.7909 -3.9882 -1.1271 33 1 3.7717 -3.4212 -1.1896 34 1 5.0846 -2.3803 -0.5516 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044510018.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:45:32 Heat of formation + Delta-G solvation = -82.347654 kcal Electronic energy + Delta-G solvation = -18877.240111 eV Core-core repulsion = 15936.229524 eV Total energy + Delta-G solvation = -2941.010588 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 260.098 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.95112 -35.27565 -34.49698 -33.97511 -33.10185 -32.66233 -29.15099 -27.73915 -26.14638 -24.96813 -21.18077 -20.52772 -19.40698 -19.15592 -17.65036 -16.46024 -16.20400 -15.62825 -14.98265 -14.43073 -14.18832 -13.85018 -13.69985 -13.26993 -12.98470 -12.81084 -12.04741 -11.62592 -11.48871 -11.31904 -11.25924 -11.23878 -10.91300 -10.84149 -10.60769 -10.55513 -10.33428 -10.26343 -10.23244 -10.17249 -9.27643 -9.07620 -8.58900 -8.25485 -6.72279 -5.33910 2.29699 3.03939 3.12789 3.19266 4.03904 4.16153 4.61921 4.64975 4.68778 4.79771 5.14732 5.20614 5.27291 5.33605 5.50796 5.65889 5.71693 5.76788 5.85610 5.95099 5.99633 6.03156 6.11216 6.18959 6.29400 6.38895 6.54129 6.59506 6.86088 7.00170 7.08363 7.30967 7.82454 7.96799 8.87600 10.22061 Molecular weight = 260.10amu Principal moments of inertia in cm(-1) A = 0.025624 B = 0.008305 C = 0.007144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.447422 B = 3370.518857 C = 3918.449617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.133 3.867 3 Si 0.919 3.081 4 H -0.262 1.262 5 H -0.272 1.272 6 H -0.271 1.271 7 C -1.017 5.017 8 H 0.105 0.895 9 S 2.711 3.289 10 O -1.008 7.008 11 O -1.006 7.006 12 N -1.123 6.123 13 C 0.145 3.855 14 H 0.107 0.893 15 C -0.142 4.142 16 C 0.030 3.970 17 N -0.506 5.506 18 C 0.031 3.969 19 C -0.132 4.132 20 C -0.147 4.147 21 C 0.046 3.954 22 H 0.097 0.903 23 H 0.290 0.710 24 H 0.399 0.601 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.050 0.950 29 H 0.074 0.926 30 H 0.048 0.952 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.092 0.908 34 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.165 -8.023 0.132 12.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.085 4.085 3 Si 0.743 3.257 4 H -0.186 1.186 5 H -0.197 1.197 6 H -0.197 1.197 7 C -1.151 5.151 8 H 0.124 0.876 9 S 2.811 3.189 10 O -0.998 6.998 11 O -0.996 6.996 12 N -0.875 5.875 13 C 0.035 3.965 14 H 0.125 0.875 15 C -0.182 4.182 16 C -0.098 4.098 17 N -0.230 5.230 18 C -0.097 4.097 19 C -0.170 4.170 20 C -0.186 4.186 21 C -0.064 4.064 22 H 0.115 0.885 23 H 0.100 0.900 24 H 0.230 0.770 25 H 0.100 0.900 26 H 0.099 0.901 27 H 0.095 0.905 28 H 0.068 0.932 29 H 0.093 0.907 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.110 0.890 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 9.475 -8.111 0.653 12.490 hybrid contribution 0.349 1.142 -0.890 1.489 sum 9.824 -6.969 -0.237 12.048 Atomic orbital electron populations 1.69906 1.06819 1.30628 1.40196 1.24743 0.94413 1.00819 0.88493 0.86149 0.80488 0.80507 0.78525 1.18551 1.19703 1.19657 1.30581 1.06213 1.11545 1.66737 0.87633 1.00559 0.72099 0.73357 0.72858 1.93376 1.73109 1.87660 1.45661 1.93368 1.72779 1.87497 1.45915 1.56151 1.54868 1.50610 1.25910 1.21672 0.88874 0.97972 0.88028 0.87487 1.23130 1.00364 0.95357 0.99329 1.23555 0.90624 0.96790 0.98832 1.66158 1.32148 1.04368 1.20296 1.23346 1.00220 0.97506 0.88610 1.22843 0.99576 0.94669 0.99953 1.23078 1.00618 0.99412 0.95515 1.23385 0.95418 0.89311 0.98287 0.88520 0.89956 0.76962 0.90010 0.90071 0.90539 0.93180 0.90730 0.93325 0.91080 0.91225 0.88996 0.90591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.56 13.19 55.43 0.73 -23.82 16 2 C 0.13 3.63 5.46 -17.82 -0.10 3.53 16 3 Si 0.92 20.20 29.54 -169.99 -5.02 15.17 16 4 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 5 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 6 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 7 C -1.02 -26.82 9.72 30.60 0.30 -26.52 16 8 H 0.11 2.52 7.48 -52.49 -0.39 2.12 16 9 S 2.71 69.51 4.91 -107.50 -0.53 68.99 16 10 O -1.01 -28.97 18.02 -57.17 -1.03 -30.00 16 11 O -1.01 -28.70 17.66 -57.17 -1.01 -29.71 16 12 N -1.12 -21.29 3.59 -3.42 -0.01 -21.30 16 13 C 0.14 2.41 3.45 -66.20 -0.23 2.18 16 14 H 0.11 1.91 7.79 -51.93 -0.40 1.51 16 15 C -0.14 -2.00 6.76 -24.62 -0.17 -2.17 16 16 C 0.03 0.38 6.72 -1.41 -0.01 0.37 16 17 N -0.51 -6.81 5.83 -218.65 -1.27 -8.08 16 18 C 0.03 0.38 6.76 -2.02 -0.01 0.37 16 19 C -0.13 -1.64 7.11 -24.36 -0.17 -1.81 16 20 C -0.15 -2.22 5.99 -25.00 -0.15 -2.37 16 21 C 0.05 0.68 4.00 -66.00 -0.26 0.42 16 22 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 23 H 0.29 7.57 8.31 -40.82 -0.34 7.23 16 24 H 0.40 6.76 8.21 -34.47 -0.28 6.47 16 25 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 26 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 27 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.05 0.62 7.14 -51.93 -0.37 0.25 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.05 0.58 7.11 -51.93 -0.37 0.21 16 31 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.09 1.53 5.44 -51.93 -0.28 1.24 16 34 H 0.08 1.16 8.10 -51.93 -0.42 0.74 16 LS Contribution 286.60 15.07 4.32 4.32 Total: -1.00 -33.38 286.60 -9.25 -42.63 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -4.62 Total: 7.80 kcal Atomic # 6 Polarization: -25.19 SS G_CDS: -0.81 Total: -25.99 kcal Atomic # 7 Polarization: -52.65 SS G_CDS: -0.56 Total: -53.20 kcal Atomic # 8 Polarization: -57.67 SS G_CDS: -2.04 Total: -59.71 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.17 kcal Atomic # 16 Polarization: 69.51 SS G_CDS: -0.53 Total: 68.99 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -33.38 -9.25 -42.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044510018.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.722 kcal (2) G-P(sol) polarization free energy of solvation -33.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds