Wall clock time and date at job start Thu Apr 9 2020 14:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31581 * 1 3 3 Si 1.86800 * 120.00232 * 2 1 4 4 H 1.48507 * 109.46619 * 270.00027 * 3 2 1 5 5 H 1.48497 * 109.47185 * 29.99357 * 3 2 1 6 6 H 1.48493 * 109.47263 * 149.99896 * 3 2 1 7 7 C 1.38775 * 119.99837 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00232 * 359.97438 * 7 2 1 9 9 S 1.76206 * 120.00007 * 180.02562 * 7 2 1 10 10 C 1.76202 * 99.99929 * 174.64573 * 9 7 2 11 11 C 1.39635 * 120.88040 * 350.87346 * 10 9 7 12 12 C 1.37869 * 119.04693 * 179.97438 * 11 10 9 13 13 N 1.32016 * 120.86109 * 359.72460 * 12 11 10 14 14 C 1.31987 * 121.94285 * 0.56965 * 13 12 11 15 15 C 1.37907 * 120.85711 * 359.42808 * 14 13 12 16 16 S 1.76198 * 120.47638 * 180.29674 * 15 14 13 17 17 N 1.65602 * 107.21948 * 115.00269 * 16 15 14 18 18 O 1.42102 * 106.40257 * 228.54050 * 16 15 14 19 19 O 1.42101 * 106.40271 * 1.46234 * 16 15 14 20 20 H 0.96995 * 120.00329 * 359.97438 * 1 2 3 21 21 H 1.07998 * 120.47495 * 359.96209 * 11 10 9 22 22 H 1.07997 * 119.56715 * 179.97438 * 12 11 10 23 23 H 1.08003 * 119.57126 * 179.70877 * 14 13 12 24 24 H 0.96995 * 120.00327 * 149.99828 * 17 16 15 25 25 H 0.97005 * 119.99551 * 330.00469 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 2.4973 2.0463 -1.4002 5 1 1.4473 2.6527 0.6999 6 1 3.5474 1.4401 0.7000 7 6 2.0097 -1.2018 0.0005 8 1 1.4697 -2.1372 0.0014 9 16 3.7717 -1.2019 0.0012 10 6 4.0776 -2.9296 0.1636 11 6 3.0366 -3.8190 0.4377 12 6 3.3186 -5.1633 0.5566 13 7 4.5513 -5.6122 0.4094 14 6 5.5633 -4.8038 0.1554 15 6 5.3669 -3.4454 0.0212 16 16 6.7239 -2.3763 -0.3256 17 7 6.4637 -1.7247 -1.8257 18 8 6.6345 -1.3015 0.5996 19 8 7.8702 -3.2079 -0.4426 20 1 -0.4850 0.8400 0.0004 21 1 2.0252 -3.4590 0.5551 22 1 2.5199 -5.8586 0.7689 23 1 6.5573 -5.2119 0.0468 24 1 6.8018 -0.8402 -2.0356 25 1 5.9731 -2.2278 -2.4945 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049807828.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:45:43 Heat of formation + Delta-G solvation = -40.557274 kcal Electronic energy + Delta-G solvation = -15192.085569 eV Core-core repulsion = 12423.973830 eV Total energy + Delta-G solvation = -2768.111739 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 260.008 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.41170 -36.79331 -35.49677 -33.06444 -32.94687 -32.09232 -31.09825 -26.33040 -23.70956 -23.32294 -19.43264 -18.78458 -17.58866 -17.05814 -16.94942 -16.19521 -15.66350 -15.39396 -14.69251 -14.18398 -13.89907 -13.64131 -12.95501 -12.29504 -11.88447 -11.80819 -11.77036 -11.72620 -11.47708 -11.28002 -10.89558 -10.46441 -10.28110 -10.14728 -9.47111 -9.27148 -9.11007 -8.92374 -7.44068 -6.78833 -4.61419 0.73671 1.06528 1.59373 2.34882 2.97096 3.12923 3.13956 3.43594 3.81242 3.85148 4.06862 4.12062 4.63860 4.77105 4.85824 5.25658 5.62439 5.73942 6.00199 6.18469 6.24167 6.37547 6.99069 7.29187 7.43456 8.01064 8.25994 8.60258 10.27205 Molecular weight = 260.01amu Principal moments of inertia in cm(-1) A = 0.024007 B = 0.009560 C = 0.007183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.025326 B = 2928.134535 C = 3897.363893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.106 3.894 3 Si 0.843 3.157 4 H -0.259 1.259 5 H -0.262 1.262 6 H -0.228 1.228 7 C -0.560 4.560 8 H 0.115 0.885 9 S 0.054 5.946 10 C 0.041 3.959 11 C -0.204 4.204 12 C 0.150 3.850 13 N -0.532 5.532 14 C 0.212 3.788 15 C -0.755 4.755 16 S 2.706 3.294 17 N -1.243 6.243 18 O -0.952 6.952 19 O -0.976 6.976 20 H 0.281 0.719 21 H 0.157 0.843 22 H 0.154 0.846 23 H 0.166 0.834 24 H 0.419 0.581 25 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.856 -2.963 -3.205 8.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.107 4.107 3 Si 0.665 3.335 4 H -0.183 1.183 5 H -0.187 1.187 6 H -0.151 1.151 7 C -0.706 4.706 8 H 0.132 0.868 9 S 0.311 5.689 10 C -0.085 4.085 11 C -0.232 4.232 12 C -0.004 4.004 13 N -0.246 5.246 14 C 0.049 3.951 15 C -0.859 4.859 16 S 2.793 3.207 17 N -0.916 5.916 18 O -0.942 6.942 19 O -0.965 6.965 20 H 0.091 0.909 21 H 0.174 0.826 22 H 0.171 0.829 23 H 0.183 0.817 24 H 0.249 0.751 25 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 9.158 -2.433 -2.483 9.795 hybrid contribution -1.889 0.437 -0.431 1.986 sum 7.268 -1.996 -2.914 8.081 Atomic orbital electron populations 1.69871 1.06022 1.28926 1.43145 1.24818 0.94703 0.99177 0.92010 0.86974 0.82510 0.83234 0.80746 1.18342 1.18652 1.15131 1.22937 0.88009 0.98993 1.60658 0.86762 1.83564 1.10662 0.96196 1.78519 1.22311 0.93707 1.01155 0.91312 1.22469 1.01330 0.94191 1.05235 1.22815 0.93746 0.93633 0.90250 1.67806 1.00144 1.38945 1.17662 1.22325 0.98308 0.87436 0.86998 1.30843 1.14693 1.11088 1.29239 1.01317 0.73145 0.73426 0.72788 1.52974 1.74517 1.31227 1.32904 1.93619 1.86310 1.53400 1.60850 1.93557 1.47026 1.69667 1.86285 0.90899 0.82572 0.82874 0.81681 0.75136 0.75626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.58 13.97 55.49 0.77 -21.80 15 2 C 0.11 2.72 5.50 -17.46 -0.10 2.63 15 3 Si 0.84 18.55 27.74 -169.99 -4.71 13.83 15 4 H -0.26 -5.51 7.11 56.52 0.40 -5.11 15 5 H -0.26 -5.61 7.11 56.52 0.40 -5.21 15 6 H -0.23 -4.99 6.74 56.52 0.38 -4.61 15 7 C -0.56 -14.08 9.55 30.93 0.30 -13.78 15 8 H 0.11 2.96 5.33 -52.49 -0.28 2.68 15 9 S 0.05 1.19 17.20 -107.50 -1.85 -0.66 15 10 C 0.04 0.82 6.12 -38.55 -0.24 0.59 15 11 C -0.20 -3.94 9.27 -39.20 -0.36 -4.31 15 12 C 0.15 2.55 11.17 -17.61 -0.20 2.35 15 13 N -0.53 -9.34 10.36 -13.35 -0.14 -9.47 15 14 C 0.21 3.60 10.70 -17.61 -0.19 3.41 15 15 C -0.76 -13.49 5.95 -39.19 -0.23 -13.72 15 16 S 2.71 43.77 5.62 -107.50 -0.60 43.17 15 17 N -1.24 -15.22 9.32 60.35 0.56 -14.66 15 18 O -0.95 -18.49 16.49 -57.17 -0.94 -19.43 15 19 O -0.98 -16.76 17.00 -57.17 -0.97 -17.73 15 20 H 0.28 6.89 8.31 -40.82 -0.34 6.55 15 21 H 0.16 3.14 5.26 -52.49 -0.28 2.86 15 22 H 0.15 2.07 8.06 -52.49 -0.42 1.64 15 23 H 0.17 2.39 7.34 -52.48 -0.39 2.01 15 24 H 0.42 4.21 8.96 -34.47 -0.31 3.90 15 25 H 0.42 4.28 8.96 -34.47 -0.31 3.97 15 LS Contribution 249.12 15.07 3.75 3.75 Total: -1.00 -30.86 249.12 -6.28 -37.15 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -1.14 Total: 8.69 kcal Atomic # 6 Polarization: -21.81 SS G_CDS: -1.02 Total: -22.83 kcal Atomic # 7 Polarization: -47.14 SS G_CDS: 1.20 Total: -45.94 kcal Atomic # 8 Polarization: -35.25 SS G_CDS: -1.91 Total: -37.16 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -4.71 Total: 13.83 kcal Atomic # 16 Polarization: 44.96 SS G_CDS: -2.45 Total: 42.51 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -30.86 -6.28 -37.15 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049807828.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.409 kcal (2) G-P(sol) polarization free energy of solvation -30.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds