Wall clock time and date at job start Thu Apr 9 2020 14:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31581 * 1 3 3 Si 1.86800 * 120.00232 * 2 1 4 4 H 1.48507 * 109.46619 * 270.00027 * 3 2 1 5 5 H 1.48497 * 109.47185 * 29.99357 * 3 2 1 6 6 H 1.48493 * 109.47263 * 149.99896 * 3 2 1 7 7 C 1.38775 * 119.99837 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00232 * 359.97438 * 7 2 1 9 9 S 1.76206 * 120.00007 * 180.02562 * 7 2 1 10 10 C 1.76202 * 99.99929 * 174.64573 * 9 7 2 11 11 C 1.39635 * 120.88040 * 350.87346 * 10 9 7 12 12 C 1.37869 * 119.04693 * 179.97438 * 11 10 9 13 13 N 1.32016 * 120.86109 * 359.72460 * 12 11 10 14 14 C 1.31987 * 121.94285 * 0.56965 * 13 12 11 15 15 C 1.37907 * 120.85711 * 359.42808 * 14 13 12 16 16 S 1.76198 * 120.47638 * 180.29674 * 15 14 13 17 17 N 1.65602 * 107.21948 * 115.00269 * 16 15 14 18 18 O 1.42102 * 106.40257 * 228.54050 * 16 15 14 19 19 O 1.42101 * 106.40271 * 1.46234 * 16 15 14 20 20 H 0.96995 * 120.00329 * 359.97438 * 1 2 3 21 21 H 1.07998 * 120.47495 * 359.96209 * 11 10 9 22 22 H 1.07997 * 119.56715 * 179.97438 * 12 11 10 23 23 H 1.08003 * 119.57126 * 179.70877 * 14 13 12 24 24 H 0.96995 * 120.00327 * 149.99828 * 17 16 15 25 25 H 0.97005 * 119.99551 * 330.00469 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 2.4973 2.0463 -1.4002 5 1 1.4473 2.6527 0.6999 6 1 3.5474 1.4401 0.7000 7 6 2.0097 -1.2018 0.0005 8 1 1.4697 -2.1372 0.0014 9 16 3.7717 -1.2019 0.0012 10 6 4.0776 -2.9296 0.1636 11 6 3.0366 -3.8190 0.4377 12 6 3.3186 -5.1633 0.5566 13 7 4.5513 -5.6122 0.4094 14 6 5.5633 -4.8038 0.1554 15 6 5.3669 -3.4454 0.0212 16 16 6.7239 -2.3763 -0.3256 17 7 6.4637 -1.7247 -1.8257 18 8 6.6345 -1.3015 0.5996 19 8 7.8702 -3.2079 -0.4426 20 1 -0.4850 0.8400 0.0004 21 1 2.0252 -3.4590 0.5551 22 1 2.5199 -5.8586 0.7689 23 1 6.5573 -5.2119 0.0468 24 1 6.8018 -0.8402 -2.0356 25 1 5.9731 -2.2278 -2.4945 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049807828.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:45:42 Heat of formation + Delta-G solvation = -66.091748 kcal Electronic energy + Delta-G solvation = -15193.192827 eV Core-core repulsion = 12423.973830 eV Total energy + Delta-G solvation = -2769.218997 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 260.008 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.88351 -38.18719 -36.89978 -34.94809 -34.08038 -33.56659 -32.56104 -28.20961 -25.18413 -24.79994 -20.89478 -20.29188 -19.02815 -18.40337 -18.29106 -17.68972 -17.27020 -16.90518 -16.04323 -15.74602 -15.47525 -15.10592 -14.65228 -13.68743 -13.53908 -13.33704 -13.20303 -13.17787 -13.14995 -12.91153 -12.41767 -12.01094 -11.93737 -11.33322 -11.23517 -11.00309 -10.58535 -10.42891 -9.16298 -8.68447 -6.51886 -0.60185 -0.36246 0.08357 0.70842 1.24474 1.37315 1.44717 2.06141 2.16447 2.27393 2.45219 2.69117 2.78565 3.43277 3.44504 3.88129 4.19335 4.27584 4.56802 4.70838 4.90631 5.32299 5.51887 5.57524 6.06189 6.41172 6.70400 6.81030 8.41275 Molecular weight = 260.01amu Principal moments of inertia in cm(-1) A = 0.024007 B = 0.009560 C = 0.007183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.025326 B = 2928.134535 C = 3897.363893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.891 3.109 4 H -0.246 1.246 5 H -0.255 1.255 6 H -0.227 1.227 7 C -0.573 4.573 8 H 0.094 0.906 9 S 0.036 5.964 10 C 0.031 3.969 11 C -0.221 4.221 12 C 0.164 3.836 13 N -0.530 5.530 14 C 0.210 3.790 15 C -0.752 4.752 16 S 2.727 3.273 17 N -1.228 6.228 18 O -0.983 6.983 19 O -0.981 6.981 20 H 0.284 0.716 21 H 0.143 0.857 22 H 0.191 0.809 23 H 0.195 0.805 24 H 0.431 0.569 25 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.524 -3.716 -3.661 10.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.148 4.148 3 Si 0.711 3.289 4 H -0.170 1.170 5 H -0.178 1.178 6 H -0.151 1.151 7 C -0.719 4.719 8 H 0.111 0.889 9 S 0.291 5.709 10 C -0.094 4.094 11 C -0.249 4.249 12 C 0.009 3.991 13 N -0.243 5.243 14 C 0.049 3.951 15 C -0.852 4.852 16 S 2.813 3.187 17 N -0.908 5.908 18 O -0.972 6.972 19 O -0.970 6.970 20 H 0.094 0.906 21 H 0.160 0.840 22 H 0.208 0.792 23 H 0.212 0.788 24 H 0.264 0.736 25 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 10.845 -3.232 -2.950 11.695 hybrid contribution -2.290 0.390 -0.303 2.343 sum 8.555 -2.842 -3.253 9.584 Atomic orbital electron populations 1.69947 1.07402 1.29878 1.45339 1.25571 0.95352 1.02129 0.91724 0.86244 0.81373 0.79829 0.81449 1.16989 1.17847 1.15067 1.23060 0.89978 0.98388 1.60487 0.88866 1.83306 1.08004 0.98232 1.81406 1.22389 0.94971 1.00155 0.91917 1.22515 1.00691 0.95375 1.06332 1.23350 0.94549 0.93166 0.88052 1.67938 1.00341 1.38991 1.17026 1.22870 0.99473 0.87031 0.85764 1.31162 1.14177 1.11936 1.27883 1.00642 0.72401 0.72625 0.73052 1.52620 1.74522 1.32060 1.31565 1.93586 1.86519 1.54359 1.62761 1.93555 1.46949 1.69882 1.86636 0.90572 0.83980 0.79192 0.78842 0.73558 0.74204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -48.77 13.97 21.64 0.30 -48.47 15 2 C 0.06 3.20 5.50 84.86 0.47 3.67 15 3 Si 0.89 38.18 27.74 68.60 1.90 40.08 15 4 H -0.25 -9.93 7.11 99.48 0.71 -9.22 15 5 H -0.25 -10.45 7.11 99.48 0.71 -9.74 15 6 H -0.23 -9.63 6.74 99.48 0.67 -8.96 15 7 C -0.57 -29.48 9.55 67.95 0.65 -28.83 15 8 H 0.09 5.05 5.33 -2.91 -0.02 5.03 15 9 S 0.04 1.60 17.20 -56.49 -0.97 0.62 15 10 C 0.03 1.20 6.12 22.94 0.14 1.34 15 11 C -0.22 -8.39 9.27 22.52 0.21 -8.18 15 12 C 0.16 5.16 11.17 84.58 0.94 6.11 15 13 N -0.53 -16.95 10.36 -196.16 -2.03 -18.99 15 14 C 0.21 6.50 10.70 84.59 0.91 7.41 15 15 C -0.75 -25.29 5.95 22.52 0.13 -25.15 15 16 S 2.73 82.38 5.62 -56.49 -0.32 82.06 15 17 N -1.23 -27.21 9.32 37.02 0.35 -26.87 15 18 O -0.98 -36.74 16.49 -128.00 -2.11 -38.85 15 19 O -0.98 -30.92 17.00 -128.00 -2.18 -33.09 15 20 H 0.28 14.32 8.31 -92.71 -0.77 13.55 15 21 H 0.14 5.86 5.26 -2.91 -0.02 5.84 15 22 H 0.19 4.50 8.06 -2.91 -0.02 4.48 15 23 H 0.19 4.86 7.34 -2.91 -0.02 4.84 15 24 H 0.43 7.63 8.96 -96.75 -0.87 6.77 15 25 H 0.43 7.72 8.96 -96.74 -0.87 6.85 15 Total: -1.00 -65.57 249.12 -2.11 -67.68 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: -0.50 Total: 19.44 kcal Atomic # 6 Polarization: -47.08 SS G_CDS: 3.45 Total: -43.63 kcal Atomic # 7 Polarization: -92.94 SS G_CDS: -1.38 Total: -94.32 kcal Atomic # 8 Polarization: -67.65 SS G_CDS: -4.29 Total: -71.94 kcal Atomic # 14 Polarization: 38.18 SS G_CDS: 1.90 Total: 40.08 kcal Atomic # 16 Polarization: 83.98 SS G_CDS: -1.29 Total: 82.69 kcal Total: -65.57 -2.11 -67.68 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049807828.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.587 kcal (2) G-P(sol) polarization free energy of solvation -65.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds