Wall clock time and date at job start Thu Apr 9 2020 14:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 N 1.46499 * 109.46799 * 120.00100 * 2 1 3 5 5 S 1.65605 * 119.99754 * 264.99661 * 4 2 1 6 6 O 1.42101 * 106.40144 * 178.54162 * 5 4 2 7 7 O 1.42100 * 106.40424 * 311.46264 * 5 4 2 8 8 C 1.76206 * 107.21435 * 65.00457 * 5 4 2 9 9 H 1.07995 * 119.99926 * 359.97438 * 8 5 4 10 10 C 1.37878 * 119.99879 * 179.97438 * 8 5 4 11 11 N 1.31520 * 120.00156 * 0.02562 * 10 8 5 12 12 Si 1.86798 * 120.00141 * 179.97438 * 10 8 5 13 13 H 1.48505 * 109.47052 * 90.00060 * 12 10 8 14 14 H 1.48499 * 109.47092 * 210.00273 * 12 10 8 15 15 H 1.48496 * 109.47074 * 330.00335 * 12 10 8 16 16 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 17 17 N 1.30524 * 126.34467 * 284.69658 * 16 2 1 18 18 N 1.28594 * 109.67157 * 179.82680 * 17 16 2 19 19 C 1.30527 * 109.67379 * 0.43851 * 18 17 16 20 20 N 1.35493 * 126.34641 * 104.99831 * 16 2 1 21 21 C 1.46500 * 126.98068 * 0.02562 * 20 16 2 22 22 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 23 23 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 24 24 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 25 25 H 0.97000 * 120.00636 * 85.00048 * 4 2 1 26 26 H 0.96996 * 120.00209 * 180.02562 * 11 10 8 27 27 H 1.07990 * 126.34825 * 179.73477 * 19 18 17 28 28 H 1.08998 * 109.47522 * 89.99553 * 21 20 16 29 29 H 1.08999 * 109.46666 * 210.00202 * 21 20 16 30 30 H 1.09003 * 109.46786 * 329.98926 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 16 2.4122 0.1772 2.5505 6 8 2.8123 -0.7697 3.5315 7 8 3.2436 1.2443 2.1156 8 6 0.9273 0.9148 3.1474 9 1 -0.0046 0.7493 2.6274 10 6 0.9554 1.7031 4.2782 11 7 2.0905 1.9050 4.9111 12 14 -0.6185 2.4856 4.9106 13 1 -1.2780 1.5646 5.8708 14 1 -0.2959 3.7644 5.5931 15 1 -1.5327 2.7498 3.7706 16 6 2.0324 -0.7104 -1.2304 17 7 2.0389 -2.0002 -1.4305 18 7 2.5344 -2.2560 -2.5892 19 6 2.8753 -1.1417 -3.1772 20 7 2.5664 -0.1290 -2.3316 21 6 2.7692 1.3036 -2.5612 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 2.1109 -1.6562 1.1950 26 1 2.1102 2.4593 5.7068 27 1 3.3209 -1.0447 -4.1561 28 1 3.7553 1.5938 -2.1987 29 1 2.6978 1.5142 -3.6283 30 1 2.0050 1.8688 -2.0275 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050420140.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:45:48 Heat of formation + Delta-G solvation = -12.366419 kcal Electronic energy + Delta-G solvation = -17942.434353 eV Core-core repulsion = 14900.918036 eV Total energy + Delta-G solvation = -3041.516317 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 260.073 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.03628 -36.14603 -35.18195 -34.91662 -34.00993 -33.14469 -30.37679 -28.86626 -27.66892 -26.17704 -23.72770 -22.29545 -20.39440 -19.07349 -17.59619 -17.26230 -16.33531 -16.25851 -15.60566 -15.10582 -14.63830 -14.13122 -13.92088 -13.59940 -13.47810 -12.94302 -12.88750 -12.22634 -12.02446 -11.51088 -11.36741 -11.25001 -10.90611 -10.61222 -10.51973 -10.35154 -10.28934 -10.21264 -10.15251 -9.28715 -9.27175 -9.02146 -8.65574 -6.74434 -5.37182 1.80629 2.23161 2.55453 2.98886 3.04165 3.11719 3.16416 4.01958 4.27733 4.50437 4.57428 4.60324 4.69722 4.94784 5.07379 5.27063 5.39304 5.50825 5.69932 5.82796 5.89254 6.07922 6.17395 6.39578 6.53068 6.74011 6.88625 7.29991 7.84408 7.94421 8.82494 8.84619 10.19941 Molecular weight = 260.07amu Principal moments of inertia in cm(-1) A = 0.033030 B = 0.006507 C = 0.006223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.513812 B = 4302.110427 C = 4498.206567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.247 3.753 3 H 0.105 0.895 4 N -1.123 6.123 5 S 2.712 3.288 6 O -1.000 7.000 7 O -1.008 7.008 8 C -1.020 5.020 9 H 0.108 0.892 10 C 0.133 3.867 11 N -0.844 5.844 12 Si 0.920 3.080 13 H -0.267 1.267 14 H -0.275 1.275 15 H -0.262 1.262 16 C 0.184 3.816 17 N -0.286 5.286 18 N -0.300 5.300 19 C 0.140 3.860 20 N -0.474 5.474 21 C 0.066 3.934 22 H 0.090 0.910 23 H 0.058 0.942 24 H 0.069 0.931 25 H 0.412 0.588 26 H 0.291 0.709 27 H 0.217 0.783 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.343 2.086 -14.009 14.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.135 3.865 3 H 0.123 0.877 4 N -0.877 5.877 5 S 2.812 3.188 6 O -0.991 6.991 7 O -0.998 6.998 8 C -1.153 5.153 9 H 0.126 0.874 10 C -0.085 4.085 11 N -0.474 5.474 12 Si 0.744 3.256 13 H -0.192 1.192 14 H -0.200 1.200 15 H -0.186 1.186 16 C -0.086 4.086 17 N -0.126 5.126 18 N -0.139 5.139 19 C -0.147 4.147 20 N -0.165 5.165 21 C -0.077 4.077 22 H 0.109 0.891 23 H 0.077 0.923 24 H 0.088 0.912 25 H 0.245 0.755 26 H 0.102 0.898 27 H 0.233 0.767 28 H 0.107 0.893 29 H 0.111 0.889 30 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.530 0.965 -13.291 13.413 hybrid contribution -1.035 1.548 -0.092 1.864 sum -2.565 2.513 -13.383 13.856 Atomic orbital electron populations 1.22443 0.93406 1.03803 1.03346 1.18773 0.94309 0.94659 0.78742 0.87727 1.56100 1.84531 1.19819 1.27272 1.00552 0.75738 0.72375 0.70118 1.93390 1.84172 1.64140 1.57353 1.93347 1.68909 1.55799 1.81778 1.30620 1.16304 1.45814 1.22610 0.87409 1.24750 0.98031 0.92175 0.93542 1.69899 1.26345 1.33398 1.17747 0.86163 0.81351 0.78628 0.79420 1.19153 1.20045 1.18618 1.25264 1.00423 0.91272 0.91605 1.74184 1.17942 1.10840 1.09672 1.74234 1.14459 1.23122 1.02124 1.26383 1.05042 0.83740 0.99555 1.46217 1.45900 1.09590 1.14768 1.22219 1.04833 0.76585 1.04013 0.89110 0.92329 0.91158 0.75521 0.89840 0.76658 0.89343 0.88901 0.88530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.53 9.50 37.16 0.35 -2.18 16 2 C 0.25 4.20 3.22 -69.08 -0.22 3.98 16 3 H 0.10 1.72 6.59 -51.93 -0.34 1.38 16 4 N -1.12 -22.81 5.46 -5.88 -0.03 -22.84 16 5 S 2.71 70.10 5.00 -107.50 -0.54 69.56 16 6 O -1.00 -29.31 18.02 -57.17 -1.03 -30.34 16 7 O -1.01 -28.10 17.36 -57.17 -0.99 -29.09 16 8 C -1.02 -26.52 9.57 30.60 0.29 -26.23 16 9 H 0.11 2.49 5.61 -52.49 -0.29 2.19 16 10 C 0.13 3.57 5.46 -17.82 -0.10 3.47 16 11 N -0.84 -24.13 13.19 55.43 0.73 -23.40 16 12 Si 0.92 19.71 29.54 -169.99 -5.02 14.69 16 13 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 14 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 15 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 16 C 0.18 2.99 6.85 -154.98 -1.06 1.92 16 17 N -0.29 -5.20 11.97 32.80 0.39 -4.81 16 18 N -0.30 -4.97 12.21 29.69 0.36 -4.61 16 19 C 0.14 1.71 12.74 -89.94 -1.15 0.56 16 20 N -0.47 -5.94 3.15 -122.69 -0.39 -6.32 16 21 C 0.07 0.53 10.84 59.85 0.65 1.18 16 22 H 0.09 1.43 5.74 -51.93 -0.30 1.13 16 23 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.41 8.03 8.63 -34.47 -0.30 7.73 16 26 H 0.29 7.48 8.31 -40.82 -0.34 7.14 16 27 H 0.22 1.48 8.06 -52.49 -0.42 1.05 16 28 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.10 0.72 7.46 -51.93 -0.39 0.33 16 LS Contribution 278.38 15.07 4.20 4.20 Total: -1.00 -37.13 278.38 -6.42 -43.55 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -2.87 Total: 6.72 kcal Atomic # 6 Polarization: -16.06 SS G_CDS: -1.23 Total: -17.30 kcal Atomic # 7 Polarization: -63.04 SS G_CDS: 1.07 Total: -61.97 kcal Atomic # 8 Polarization: -57.41 SS G_CDS: -2.02 Total: -59.43 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.69 kcal Atomic # 16 Polarization: 70.10 SS G_CDS: -0.54 Total: 69.56 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -37.13 -6.42 -43.55 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050420140.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.181 kcal (2) G-P(sol) polarization free energy of solvation -37.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds