Wall clock time and date at job start Thu Apr 9 2020 14:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30857 * 1 3 3 Si 1.86799 * 120.00609 * 2 1 4 4 H 1.48496 * 109.47251 * 240.00414 * 3 2 1 5 5 H 1.48504 * 109.46932 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46806 * 120.00160 * 3 2 1 7 7 C 1.39932 * 119.99426 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99421 * 197.77525 * 7 2 1 9 9 C 1.41143 * 120.00327 * 17.76668 * 7 2 1 10 10 C 1.40870 * 120.17125 * 204.47078 * 9 7 2 11 11 C 1.36387 * 119.82501 * 179.75207 * 10 9 7 12 12 C 1.39441 * 120.17299 * 0.26661 * 11 10 9 13 13 N 1.39487 * 119.82607 * 179.97438 * 12 11 10 14 14 C 1.34437 * 125.99413 * 359.70070 * 13 12 11 15 15 O 1.21528 * 124.45641 * 359.97438 * 14 13 12 16 16 N 1.34210 * 111.07102 * 179.80893 * 14 13 12 17 17 C 1.31090 * 109.62597 * 0.45815 * 16 14 13 18 18 O 1.34688 * 126.99596 * 179.75419 * 17 16 14 19 19 C 1.35176 * 125.98714 * 180.02562 * 13 12 11 20 20 O 1.21297 * 127.36259 * 0.02562 * 19 13 12 21 21 C 1.39441 * 120.34142 * 0.02562 * 12 11 10 22 22 C 1.36383 * 120.17593 * 359.97438 * 21 12 11 23 23 H 0.97001 * 119.99470 * 359.97438 * 1 2 3 24 24 H 1.08003 * 120.08434 * 0.02562 * 10 9 7 25 25 H 1.08000 * 119.91113 * 180.24869 * 11 10 9 26 26 H 0.96696 * 116.99740 * 359.97197 * 18 17 16 27 27 H 1.08001 * 119.90938 * 179.97438 * 21 12 11 28 28 H 1.07994 * 120.08765 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2427 1.6176 0.0000 4 1 3.0964 1.6963 -1.2125 5 1 1.2778 2.7464 0.0006 6 1 3.0965 1.6961 1.2125 7 6 2.0081 -1.2119 -0.0005 8 1 3.0495 -1.2344 0.2850 9 6 1.3528 -2.4049 -0.3740 10 6 1.8278 -3.6481 0.0879 11 6 1.1862 -4.7961 -0.2733 12 6 0.0661 -4.7419 -1.1021 13 7 -0.5842 -5.9206 -1.4674 14 6 -0.2329 -7.1643 -1.0971 15 8 0.7148 -7.4272 -0.3831 16 7 -1.0687 -8.0767 -1.6168 17 6 -1.9792 -7.4762 -2.3440 18 8 -2.9842 -8.0575 -3.0267 19 6 -1.6747 -6.0130 -2.2609 20 8 -2.2775 -5.1044 -2.7923 21 6 -0.4065 -3.5157 -1.5683 22 6 0.2243 -2.3590 -1.2160 23 1 -0.4849 0.8401 0.0004 24 1 2.6952 -3.6916 0.7299 25 1 1.5468 -5.7496 0.0833 26 1 -3.0466 -9.0213 -2.9802 27 1 -1.2744 -3.4819 -2.2102 28 1 -0.1427 -1.4102 -1.5782 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051601921.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:45:53 Heat of formation + Delta-G solvation = -6.464353 kcal Electronic energy + Delta-G solvation = -18438.003925 eV Core-core repulsion = 15229.006838 eV Total energy + Delta-G solvation = -3208.997086 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 260.063 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.00111 -39.06502 -38.63298 -37.56598 -36.40615 -34.53284 -33.00032 -29.76682 -29.26661 -26.32272 -25.46190 -22.85331 -22.33431 -20.86552 -20.33066 -18.85870 -17.50636 -17.25044 -17.23720 -16.38882 -15.62075 -15.32727 -14.70310 -14.64645 -14.19576 -14.10909 -13.33986 -12.88708 -12.68564 -12.31243 -12.04456 -11.73181 -11.45324 -11.18973 -10.98993 -10.69439 -10.50610 -10.28101 -10.07236 -9.78824 -9.28586 -9.12143 -7.74889 -7.31873 -6.94219 -4.49087 -0.27746 1.70550 2.13554 2.61979 2.80024 2.93860 2.96560 2.99281 3.02720 3.35287 3.80704 3.85883 4.33505 4.46453 5.32007 5.52653 5.78608 6.19643 6.29400 6.42110 6.82828 6.85308 6.93872 7.03295 7.13007 7.32505 7.43327 7.54060 7.84300 7.86502 7.98235 8.08543 8.42950 8.69157 8.76846 9.98772 Molecular weight = 260.06amu Principal moments of inertia in cm(-1) A = 0.041506 B = 0.005110 C = 0.004608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.436135 B = 5478.044647 C = 6075.513078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.780 5.780 2 C 0.074 3.926 3 Si 0.913 3.087 4 H -0.261 1.261 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.448 4.448 8 H 0.083 0.917 9 C 0.112 3.888 10 C -0.214 4.214 11 C -0.085 4.085 12 C -0.035 4.035 13 N -0.502 5.502 14 C 0.658 3.342 15 O -0.441 6.441 16 N -0.557 5.557 17 C 0.394 3.606 18 O -0.406 6.406 19 C 0.521 3.479 20 O -0.411 6.411 21 C -0.101 4.101 22 C -0.155 4.155 23 H 0.286 0.714 24 H 0.103 0.897 25 H 0.124 0.876 26 H 0.429 0.571 27 H 0.116 0.884 28 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.642 -8.725 -4.601 10.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.146 4.146 3 Si 0.737 3.263 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.476 4.476 8 H 0.101 0.899 9 C 0.109 3.891 10 C -0.234 4.234 11 C -0.104 4.104 12 C -0.124 4.124 13 N -0.242 5.242 14 C 0.360 3.640 15 O -0.310 6.310 16 N -0.314 5.314 17 C 0.169 3.831 18 O -0.199 6.199 19 C 0.301 3.699 20 O -0.277 6.277 21 C -0.121 4.121 22 C -0.175 4.175 23 H 0.097 0.903 24 H 0.121 0.879 25 H 0.141 0.859 26 H 0.289 0.711 27 H 0.134 0.866 28 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.525 -8.445 -4.346 10.520 hybrid contribution 0.124 0.690 0.003 0.702 sum -4.400 -7.754 -4.343 9.917 Atomic orbital electron populations 1.69821 1.07729 1.29928 1.32952 1.26026 0.94814 1.01728 0.92061 0.86274 0.80141 0.79671 0.80199 1.18589 1.20158 1.18794 1.19650 0.98306 0.91172 1.38474 0.89895 1.17780 0.90965 0.92269 0.88123 1.20640 1.03886 0.92094 1.06822 1.20589 0.93764 0.99367 0.96710 1.17116 1.01002 0.81241 1.13051 1.43959 1.26535 1.09822 1.43882 1.17877 0.84986 0.79699 0.81422 1.90808 1.25527 1.82063 1.32635 1.71864 1.08620 1.32886 1.17996 1.24601 0.83748 0.92217 0.82550 1.84533 1.42130 1.30291 1.62956 1.19136 0.82024 0.87566 0.81156 1.90760 1.50818 1.44078 1.42035 1.20597 1.00072 0.90893 1.00563 1.20940 0.99192 0.96469 1.00865 0.90342 0.87893 0.85886 0.71060 0.86587 0.85656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.33 10.96 55.55 0.61 -18.72 15 2 C 0.07 1.76 5.13 -17.33 -0.09 1.67 15 3 Si 0.91 17.79 29.60 -169.99 -5.03 12.76 15 4 H -0.26 -5.06 7.11 56.52 0.40 -4.66 15 5 H -0.28 -5.26 7.11 56.52 0.40 -4.85 15 6 H -0.26 -5.07 7.11 56.52 0.40 -4.67 15 7 C -0.45 -11.36 9.04 -37.85 -0.34 -11.70 15 8 H 0.08 2.00 7.91 -52.48 -0.41 1.58 15 9 C 0.11 2.89 5.57 -106.80 -0.60 2.30 15 10 C -0.21 -5.21 9.74 -39.25 -0.38 -5.60 15 11 C -0.08 -1.99 9.28 -39.80 -0.37 -2.36 15 12 C -0.04 -0.81 6.63 -83.48 -0.55 -1.36 15 13 N -0.50 -9.87 2.87 -64.70 -0.19 -10.06 15 14 C 0.66 12.28 8.60 -87.73 -0.75 11.53 15 15 O -0.44 -9.25 14.94 5.34 0.08 -9.17 15 16 N -0.56 -8.18 11.25 -14.41 -0.16 -8.35 15 17 C 0.39 4.90 8.93 -13.08 -0.12 4.78 15 18 O -0.41 -3.09 13.48 -15.82 -0.21 -3.30 15 19 C 0.52 8.86 8.16 -11.29 -0.09 8.77 15 20 O -0.41 -7.69 15.28 5.54 0.08 -7.60 15 21 C -0.10 -2.42 9.32 -39.80 -0.37 -2.79 15 22 C -0.15 -3.95 8.64 -39.25 -0.34 -4.29 15 23 H 0.29 6.42 8.30 -40.82 -0.34 6.08 15 24 H 0.10 2.33 8.06 -52.48 -0.42 1.90 15 25 H 0.12 2.79 5.32 -52.49 -0.28 2.51 15 26 H 0.43 0.69 9.15 45.56 0.42 1.11 15 27 H 0.12 2.65 5.48 -52.49 -0.29 2.36 15 28 H 0.13 3.26 6.17 -52.49 -0.32 2.93 15 LS Contribution 259.14 15.07 3.91 3.91 Total: -1.00 -29.93 259.14 -5.36 -35.29 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -0.45 Total: 4.29 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: -4.00 Total: 0.95 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: 0.26 Total: -37.13 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -0.05 Total: -20.07 kcal Atomic # 14 Polarization: 17.79 SS G_CDS: -5.03 Total: 12.76 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -29.93 -5.36 -35.29 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051601921.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.827 kcal (2) G-P(sol) polarization free energy of solvation -29.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds