Wall clock time and date at job start Thu Apr 9 2020 14:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30857 * 1 3 3 Si 1.86799 * 120.00609 * 2 1 4 4 H 1.48496 * 109.47251 * 240.00414 * 3 2 1 5 5 H 1.48504 * 109.46932 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46806 * 120.00160 * 3 2 1 7 7 C 1.39932 * 119.99426 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99421 * 197.77525 * 7 2 1 9 9 C 1.41143 * 120.00327 * 17.76668 * 7 2 1 10 10 C 1.40870 * 120.17125 * 204.47078 * 9 7 2 11 11 C 1.36387 * 119.82501 * 179.75207 * 10 9 7 12 12 C 1.39441 * 120.17299 * 0.26661 * 11 10 9 13 13 N 1.39487 * 119.82607 * 179.97438 * 12 11 10 14 14 C 1.34437 * 125.99413 * 359.70070 * 13 12 11 15 15 O 1.21528 * 124.45641 * 359.97438 * 14 13 12 16 16 N 1.34210 * 111.07102 * 179.80893 * 14 13 12 17 17 C 1.31090 * 109.62597 * 0.45815 * 16 14 13 18 18 O 1.34688 * 126.99596 * 179.75419 * 17 16 14 19 19 C 1.35176 * 125.98714 * 180.02562 * 13 12 11 20 20 O 1.21297 * 127.36259 * 0.02562 * 19 13 12 21 21 C 1.39441 * 120.34142 * 0.02562 * 12 11 10 22 22 C 1.36383 * 120.17593 * 359.97438 * 21 12 11 23 23 H 0.97001 * 119.99470 * 359.97438 * 1 2 3 24 24 H 1.08003 * 120.08434 * 0.02562 * 10 9 7 25 25 H 1.08000 * 119.91113 * 180.24869 * 11 10 9 26 26 H 0.96696 * 116.99740 * 359.97197 * 18 17 16 27 27 H 1.08001 * 119.90938 * 179.97438 * 21 12 11 28 28 H 1.07994 * 120.08765 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2427 1.6176 0.0000 4 1 3.0964 1.6963 -1.2125 5 1 1.2778 2.7464 0.0006 6 1 3.0965 1.6961 1.2125 7 6 2.0081 -1.2119 -0.0005 8 1 3.0495 -1.2344 0.2850 9 6 1.3528 -2.4049 -0.3740 10 6 1.8278 -3.6481 0.0879 11 6 1.1862 -4.7961 -0.2733 12 6 0.0661 -4.7419 -1.1021 13 7 -0.5842 -5.9206 -1.4674 14 6 -0.2329 -7.1643 -1.0971 15 8 0.7148 -7.4272 -0.3831 16 7 -1.0687 -8.0767 -1.6168 17 6 -1.9792 -7.4762 -2.3440 18 8 -2.9842 -8.0575 -3.0267 19 6 -1.6747 -6.0130 -2.2609 20 8 -2.2775 -5.1044 -2.7923 21 6 -0.4065 -3.5157 -1.5683 22 6 0.2243 -2.3590 -1.2160 23 1 -0.4849 0.8401 0.0004 24 1 2.6952 -3.6916 0.7299 25 1 1.5468 -5.7496 0.0833 26 1 -3.0466 -9.0213 -2.9802 27 1 -1.2744 -3.4819 -2.2102 28 1 -0.1427 -1.4102 -1.5782 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051601921.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:45:52 Heat of formation + Delta-G solvation = -30.845639 kcal Electronic energy + Delta-G solvation = -18439.061177 eV Core-core repulsion = 15229.006838 eV Total energy + Delta-G solvation = -3210.054338 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 260.063 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.37948 -40.27561 -40.03608 -39.18725 -37.79605 -36.17654 -34.62252 -31.64372 -31.06773 -27.73527 -27.09151 -24.35890 -23.94417 -22.36597 -21.96152 -20.15478 -19.33679 -18.75866 -18.60245 -17.77747 -17.23413 -16.94308 -16.03092 -15.65034 -15.57800 -15.56258 -15.20081 -14.63721 -14.33077 -14.05022 -13.77306 -13.34622 -13.07796 -12.81374 -12.73007 -12.19476 -11.93178 -11.71715 -11.63783 -11.54789 -11.02067 -10.82442 -9.65921 -9.17710 -8.73843 -6.39825 -1.50991 0.49350 0.50828 1.00015 1.19743 1.39583 1.48362 1.51697 1.52806 1.82927 2.18277 2.56006 2.64817 3.44995 3.60760 3.88269 4.15801 4.33979 4.48040 4.95162 5.03842 5.09033 5.23180 5.52873 5.54014 5.64159 5.77770 5.96157 6.01078 6.18322 6.26440 6.40413 6.53711 6.80492 6.87402 8.22095 Molecular weight = 260.06amu Principal moments of inertia in cm(-1) A = 0.041506 B = 0.005110 C = 0.004608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.436135 B = 5478.044647 C = 6075.513078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.035 3.965 3 Si 0.988 3.012 4 H -0.259 1.259 5 H -0.267 1.267 6 H -0.257 1.257 7 C -0.480 4.480 8 H 0.086 0.914 9 C 0.085 3.915 10 C -0.225 4.225 11 C -0.090 4.090 12 C -0.027 4.027 13 N -0.520 5.520 14 C 0.660 3.340 15 O -0.476 6.476 16 N -0.552 5.552 17 C 0.442 3.558 18 O -0.378 6.378 19 C 0.517 3.483 20 O -0.428 6.428 21 C -0.105 4.105 22 C -0.173 4.173 23 H 0.294 0.706 24 H 0.113 0.887 25 H 0.131 0.869 26 H 0.463 0.537 27 H 0.124 0.876 28 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.565 -9.686 -5.397 12.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.182 4.182 3 Si 0.808 3.192 4 H -0.183 1.183 5 H -0.191 1.191 6 H -0.181 1.181 7 C -0.508 4.508 8 H 0.104 0.896 9 C 0.082 3.918 10 C -0.245 4.245 11 C -0.110 4.110 12 C -0.117 4.117 13 N -0.261 5.261 14 C 0.363 3.637 15 O -0.347 6.347 16 N -0.312 5.312 17 C 0.219 3.781 18 O -0.175 6.175 19 C 0.299 3.701 20 O -0.295 6.295 21 C -0.125 4.125 22 C -0.193 4.193 23 H 0.105 0.895 24 H 0.131 0.869 25 H 0.149 0.851 26 H 0.330 0.670 27 H 0.141 0.859 28 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -5.519 -9.483 -5.183 12.134 hybrid contribution 0.200 0.824 0.128 0.857 sum -5.319 -8.659 -5.055 11.350 Atomic orbital electron populations 1.69866 1.09190 1.31315 1.33285 1.26893 0.95525 1.04875 0.90929 0.85157 0.78749 0.75048 0.80268 1.18293 1.19101 1.18138 1.19922 0.98735 0.92121 1.40064 0.89574 1.18085 0.91623 0.93243 0.88868 1.20829 1.04437 0.92097 1.07118 1.20731 0.94027 0.99364 0.96852 1.17110 1.00553 0.82330 1.11713 1.44005 1.27671 1.09354 1.45057 1.18203 0.84964 0.79661 0.80823 1.90776 1.27191 1.82269 1.34495 1.71981 1.09072 1.30549 1.19582 1.23735 0.83678 0.89326 0.81392 1.84536 1.39102 1.33313 1.60524 1.19693 0.80881 0.89752 0.79769 1.90753 1.50957 1.45622 1.42149 1.20672 1.00194 0.90968 1.00685 1.20910 0.99965 0.96610 1.01788 0.89545 0.86934 0.85132 0.67009 0.85875 0.86850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.04 10.96 21.83 0.24 -40.80 15 2 C 0.03 1.69 5.13 85.25 0.44 2.13 15 3 Si 0.99 36.43 29.60 68.60 2.03 38.46 15 4 H -0.26 -9.36 7.11 99.48 0.71 -8.65 15 5 H -0.27 -9.30 7.11 99.48 0.71 -8.60 15 6 H -0.26 -9.17 7.11 99.48 0.71 -8.46 15 7 C -0.48 -25.02 9.04 23.39 0.21 -24.81 15 8 H 0.09 4.26 7.91 -2.91 -0.02 4.23 15 9 C 0.08 4.54 5.57 -21.28 -0.12 4.42 15 10 C -0.22 -11.25 9.74 22.48 0.22 -11.03 15 11 C -0.09 -4.31 9.28 22.13 0.21 -4.10 15 12 C -0.03 -1.26 6.63 38.50 0.26 -1.00 15 13 N -0.52 -20.08 2.87 -595.25 -1.71 -21.79 15 14 C 0.66 23.87 8.60 179.34 1.54 25.42 15 15 O -0.48 -19.82 14.94 -3.80 -0.06 -19.87 15 16 N -0.55 -14.68 11.25 -432.11 -4.86 -19.54 15 17 C 0.44 9.38 8.93 87.90 0.79 10.17 15 18 O -0.38 -3.75 13.48 -79.53 -1.07 -4.82 15 19 C 0.52 16.65 8.16 87.28 0.71 17.37 15 20 O -0.43 -15.42 15.28 -3.08 -0.05 -15.47 15 21 C -0.11 -5.13 9.32 22.13 0.21 -4.92 15 22 C -0.17 -9.13 8.64 22.48 0.19 -8.93 15 23 H 0.29 13.34 8.30 -92.71 -0.77 12.57 15 24 H 0.11 5.23 8.06 -2.91 -0.02 5.21 15 25 H 0.13 6.01 5.32 -2.91 -0.02 6.00 15 26 H 0.46 -1.40 9.15 -74.06 -0.68 -2.07 15 27 H 0.12 5.71 5.48 -2.91 -0.02 5.69 15 28 H 0.11 6.15 6.17 -2.91 -0.02 6.14 15 Total: -1.00 -66.82 259.14 -0.25 -67.07 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: 0.58 Total: 12.06 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: 4.65 Total: 4.70 kcal Atomic # 7 Polarization: -75.79 SS G_CDS: -6.33 Total: -82.13 kcal Atomic # 8 Polarization: -38.99 SS G_CDS: -1.18 Total: -40.16 kcal Atomic # 14 Polarization: 36.43 SS G_CDS: 2.03 Total: 38.46 kcal Total: -66.82 -0.25 -67.07 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051601921.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.229 kcal (2) G-P(sol) polarization free energy of solvation -66.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds